BAC Information

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BAC

Clone NameB6Ng01-211O14
Chromosome8 (Build37)
Map Location 58,817,672 - 58,953,773
singlet/doubletdoublet
Overlap geneLOC664948
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd
Downstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211O14.bB6Ng01-211O14.g
ACCGA029843GA029844
length1,1871,151
definitionB6Ng01-211O14.b B6Ng01-211O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,817,672 - 58,818,845)(58,952,633 - 58,953,773)
sequence
gaattctttgttcagttctgagccccattttttaatggggcaatgtgaag
ttttcaaaagtaataaaagaataattacagaaaccctagattcttggtgg
aaaaaatactgaatattatcatattttttaaactcatctttttcaatgaa
aagactcaagatatttgctaatattccattatattttctttcttagcccc
aacaacaatagacaataaggttcaaagatagagttgttatgatttatgtg
catgtatctgtgcctatgtgagtgtgtgtgcactgtgcccatggagatca
ggaaagggcattggatctcttgaagctggaattacaagaggtcatgaacc
aacagatatggttctaggaaccaactagattcctggaagactaacaagta
gtcttaactgctgaaccatctcttcagctcagacaccacttttaagttgt
aaaatcacatgtaacatatttattgctcaattacaagcctcatacgtgaa
atataagacataagcatgtagaaatgcaggcattgtctacgggattttga
ccttgcaatgtacactagctcttggtgatatgatctttgaccttagcttt
ctactttctcaaccttctttctcatacattctccaaaaactgaccaaatt
ttttggacggtggaaaagttactggcttagggaaatactttttaaaacaa
atatcttcaacttcctactctgataataaaaaggaaatatctgccttaaa
gcatttgtgtactgttttggttgttgttttgtctttaacaacagattgtc
taatatccccatgacatactcagagctcctgactcactaatggtgaggct
gggacataagcctcccatgtaaagataagtgcactccactgggttggttg
actggtcagtttcctgaggactccaacctcagtgttccaggggccagtag
aataattagcagaaggtcatgccaactttgggtagcttttccccataggc
atgtgctctgctctttcttgaaggagaacaactctaatttttttaaagaa
gtcccttataatttttgcccttcactggggaaaagaattgtcaccttagt
tctcacataggcttaggtcaacttgaacatagaatagacttttcaggcct
gggctatgtttttcgaatgcagcttaaaaggacttat
gaattccaagagtaggactcagtttcatactgcattaaagcctgaacatt
tttctaaacgtcctaatgaaggagagataagccattttgctaacttggga
aaatcaccctttctcggtgggctaaagaagttttaaaagttgggtatgac
ttctcattgatatgttgacttgcttatgcgtttgtatttacttttgaatt
gtgtgggcccttaggatttctttctcatctgtttttgttgttgctgttgt
tgttgacagcatatccttgaggctatgttaagaagtatgttgattggtgg
gcttttctttcttttaccctagactacactgtggatgcctcatagtcagg
tgagaggaaccctgtataattttgtgaaggaggacttattttcaatctct
actattcagctgaggaaacgctagcttcctgtggtttgagcatgtgatga
aatatccctgttaccattccttctaggctccacccgacagttaactggca
acagccaggtatgcctgaattgctattaaaggggctgcttgaccccttct
tatcctcttactcttttaccctcttactttttctgttccttctctctaca
ctttcctcccctcctctcttcatgtattcttagctggtgtctactctctg
tctctctctgtctctctgtctctctgtttctttcatctctgtctcgctgt
ctctctctctctctctctctctctctctctgcctttctctctctctactc
catcctcaacccccttccccatgccctaaataaactttattctatataat
tctgtcatatgggtaccatacaacactggcagaggcacccccttccccca
caaccatattcctgcctctaccaaaacatatcctgactctcttttctttt
cttttttttttataaaacacaacagaccctccccacccaaaaaataaaag
attggccttaggttgaaaattttaaaaattcgggacacaacacacatcat
taacttgagagaagaatagccctggttttcttgggattgttttcttcaat
attttatttccaatgttcatatttttagatatatcaggataagctatttt
tatatctggaacctagtaatgccatggaaccctttttgaagaaatttatt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58817672_58818845
seq2: B6Ng01-211O14.b_49_1235

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGCAATGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGCAATGTGAAG  50

seq1  TTTTCAAAAGTAATAAAAGAATAATTACAGAAACCCTAGATTCTTGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAAGTAATAAAAGAATAATTACAGAAACCCTAGATTCTTGGTGG  100

seq1  AAAAAATACTGAATATTATCATATTTTTTAAACTCATCTTTTTCAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACTGAATATTATCATATTTTTTAAACTCATCTTTTTCAATGAA  150

seq1  AAGACTCAAGATATTTGCTAATATTCCATTATATTTTCTTTCTTAGCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAAGATATTTGCTAATATTCCATTATATTTTCTTTCTTAGCCCC  200

seq1  AACAACAATAGACAATAAGGTTCAAAGATAGAGTTGTTATGATTTATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAGACAATAAGGTTCAAAGATAGAGTTGTTATGATTTATGTG  250

seq1  CATGTATCTGTGCCTATGTGAGTGTGTGTGCACTGTGCCCATGGAGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTGTGCCTATGTGAGTGTGTGTGCACTGTGCCCATGGAGATCA  300

seq1  GGAAAGGGCATTGGATCTCTTGAAGCTGGAATTACAAGAGGTCATGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGCATTGGATCTCTTGAAGCTGGAATTACAAGAGGTCATGAACC  350

seq1  AACAGATATGGTTCTAGGAACCAACTAGATTCCTGGAAGACTAACAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATATGGTTCTAGGAACCAACTAGATTCCTGGAAGACTAACAAGTA  400

seq1  GTCTTAACTGCTGAACCATCTCTTCAGCTCAGACACCACTTTTAAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAACTGCTGAACCATCTCTTCAGCTCAGACACCACTTTTAAGTTGT  450

seq1  AAAATCACATGTAACATATTTATTGCTCAATTACAAGCCTCATACGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACATGTAACATATTTATTGCTCAATTACAAGCCTCATACGTGAA  500

seq1  ATATAAGACATAAGCATGTAGAAATGCAGGCATTGTCTACGGGATTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGACATAAGCATGTAGAAATGCAGGCATTGTCTACGGGATTTTGA  550

seq1  CCTTGCAATGTACACTAGCTCTTGGTGATATGATCTTTGACCTTAGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAATGTACACTAGCTCTTGGTGATATGATCTTTGACCTTAGCTTT  600

seq1  CTACTTTCTCAACCTTCTTTCTCATACATTCTCCAAAAACTGACCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTCAACCTTCTTTCTCATACATTCTCCAAAAACTGACCAAATT  650

seq1  TTTTGGACGGTGGAAAAGTTACTGGCTTAGGGAAATACTTTTTAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACGGTGGAAAAGTTACTGGCTTAGGGAAATACTTTTTAAAACAA  700

seq1  ATATCTTCAACTTCCTACTCTGATAATAAAAAGGAAATATCTGCCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATATCTTCAACTTCCTACTCTGATAATAAAAAGGAAATATCTGCC-TTAA  749

seq1  AGCATTTGTGTACTGTTTTGGTTGTTGTTTTGTCTTTAACAACAGATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTGTACTGTTTTGGTTGTTGTTTTGTCTTTAACAACAGATTGT  799

seq1  CTAATATCCCCATGACATACTCAGAGCTCCTGACTCACTAATGGTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCCCCATGACATACTCAGAGCTCCTGACTCACTAATGGTGAGGC  849

seq1  TGGGACATAAGCCTCCCATGT-AAGATAAGTGCACTCCACTGGGTTGGTT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGGACATAAGCCTCCCATGTAAAGATAAGTGCACTCCACTGGGTTGGTT  899

seq1  GACTGGTCAG-TTCCTGAGGACTCC-ACCTCAGTGTCCCA-GGGCCAGTA  946
      |||||||||| |||||||||||||| |||||||||| ||| |||||||||
seq2  GACTGGTCAGTTTCCTGAGGACTCCAACCTCAGTGTTCCAGGGGCCAGTA  949

seq1  G-ATAA-TAGCAGAAGGTCATGCC-ACTTTGGGTAGC-TTTCCCCATAGG  992
      | |||| ||||||||||||||||| |||||||||||| ||||||||||||
seq2  GAATAATTAGCAGAAGGTCATGCCAACTTTGGGTAGCTTTTCCCCATAGG  999

seq1  CATGTGCTCTGCTCCTTTCTGACAGAG-ACAACTCTAA-TTTTTTAAAGA  1040
      |||||||||||||| ||  |||  ||| |||||||||| |||||||||||
seq2  CATGTGCTCTGCTCTTTCTTGAAGGAGAACAACTCTAATTTTTTTAAAGA  1049

seq1  AGTCCC-TATA--TTTTGCCC-TCACCTGGGAAAAGAATTGTCACCTTAA  1086
      |||||| ||||  |||||||| ||||  |||||||||||||||||||| |
seq2  AGTCCCTTATAATTTTTGCCCTTCACTGGGGAAAAGAATTGTCACCTT-A  1098

seq1  GGTCTCACATTAGGC-TAGGTC-ACTTGA--CTAG-ATAGACTTTTCCAA  1131
      | ||||||| ||||| |||||| ||||||   ||| |||||||||||  |
seq2  GTTCTCACA-TAGGCTTAGGTCAACTTGAACATAGAATAGACTTTTC--A  1145

seq1  GGCCT-GGCTATGTTTTTCCAGATGCAGCTAAAAAGGACCTTAT  1174
      ||||| ||||||||||||| | |||||||| ||||||| |||||
seq2  GGCCTGGGCTATGTTTTTCGA-ATGCAGCTTAAAAGGA-CTTAT  1187

seq1: chr8_58952633_58953773
seq2: B6Ng01-211O14.g_69_1219 (reverse)

seq1  AAATAATATTCTTCAAAAA-GGTTCAAT-GCATTACTAG--TTCAGAT--  44
      ||||||  ||||||||||| ||||| || ||||||||||  | |||||  
seq2  AAATAAATTTCTTCAAAAAGGGTTCCATGGCATTACTAGGTTCCAGATAT  50

seq1  -AAAATAGCTTATCCCTG--ATATCTAAAAATA--GACATGGGAAAATAA  89
       |||||||||||| ||||  |||||||||||||   |||| || ||||||
seq2  AAAAATAGCTTAT-CCTGATATATCTAAAAATATGAACATTGG-AAATAA  98

seq1  AATATTGGAAAGAAAACAATTCCAAAGAAAACCA-GGCTATTCTTCTCTC  138
      |||||||  |||||||||| ||| |||||||||| |||||||||||||||
seq2  AATATTG--AAGAAAACAA-TCCCAAGAAAACCAGGGCTATTCTTCTCTC  145

seq1  TAGTTAATGATTGTGTGTTTGTGTCCCGAATTTTTAAAATTTTCAACCTA  188
       ||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  AAGTTAATGA-TGTGTG-TTGTGTCCCGAATTTTTAAAATTTTCAACCTA  193

seq1  --GGCAATCTTTTATTTTTTTGGGTGGGGA-GGTCTGTTGTGTTTTATAA  235
        | |||||||||| ||||||||||||||| |||||||||||||||||||
seq2  AGGCCAATCTTTTA-TTTTTTGGGTGGGGAGGGTCTGTTGTGTTTTATAA  242

seq1  AAAAAAAGAAAAAGAAAAAGAGAGTCAGGATATG-TTTGGTAGAGGCAGG  284
      |||||||  ||||| ||||||||||||||||||| |||||||||||||||
seq2  AAAAAAAAGAAAAG-AAAAGAGAGTCAGGATATGTTTTGGTAGAGGCAGG  291

seq1  -ATATGG-TGTGGGGGAAGGGGGTGCCTCTGCCAGTGTTGTATGGTACCC  332
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTTGTGGGGGAAGGGGGTGCCTCTGCCAGTGTTGTATGGTACCC  341

seq1  ATATGACAGAATTATATAGAATAAAGTTTATTTAGGGCATGGGGAAGGGG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAGAATTATATAGAATAAAGTTTATTTAGGGCATGGGGAAGGGG  391

seq1  GTTGAGGATGGAGTAGAGAGAGAGAAAGGCAGAGAGAGAGAGAGAGAGAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGATGGAGTAGAGAGAGAGAAAGGCAGAGAGAGAGAGAGAGAGAG  441

seq1  AGAGAGAGAGACAGCGAGACAGAGATG-AAGAAACAGAGAGACAGAGAGA  481
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGAGAGAGACAGCGAGACAGAGATGAAAGAAACAGAGAGACAGAGAGA  491

seq1  CAGAGAGAGACAGAGAGTAGACACCAGCTAAGAATACATGAAGAGAGGAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGACAGAGAGTAGACACCAGCTAAGAATACATGAAGAGAGGAG  541

seq1  GGGAGGAAAGTGTAGAGAGAAGGAACAGAAAAAGTAAGAGGGTAAAAGAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAGTGTAGAGAGAAGGAACAGAAAAAGTAAGAGGGTAAAAGAG  591

seq1  TAAGAGGATAAGAAGGGGTCAAGCAGCCCCTTTAATAGCAATTCAGGCAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGATAAGAAGGGGTCAAGCAGCCCCTTTAATAGCAATTCAGGCAT  641

seq1  ACCTGGCTGTTGCCAGTTAACTGTCGGGTGGAGCCTAGAAGGAATGGTAA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTGTTGCCAGTTAACTGTCGGGTGGAGCCTAGAAGGAATGGTAA  691

seq1  CAGGGATATTTCATCACATGCTCAAACCACAGGAAGCTAGCGTTTCCTCA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATATTTCATCACATGCTCAAACCACAGGAAGCTAGCGTTTCCTCA  741

seq1  GCTGAATAGTAGAGATTGAAAATAAGTCCTCCTTCACAAAATTATACAGG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAGTAGAGATTGAAAATAAGTCCTCCTTCACAAAATTATACAGG  791

seq1  GTTCCTCTCACCTGACTATGAGGCATCCACAGTGTAGTCTAGGGTAAAAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTCACCTGACTATGAGGCATCCACAGTGTAGTCTAGGGTAAAAG  841

seq1  AAAGAAAAGCCCACCAATCAACATACTTCTTAACATAGCCTCAAGGATAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGCCCACCAATCAACATACTTCTTAACATAGCCTCAAGGATAT  891

seq1  GCTGTCAACAACAACAGCAACAACAAAAACAGATGAGAAAGAAATCCTAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAACAACAACAGCAACAACAAAAACAGATGAGAAAGAAATCCTAA  941

seq1  GGGCCCACACAATTCAAAAGTAAATACAAACGCATAAGCAAGTCAACATA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCACACAATTCAAAAGTAAATACAAACGCATAAGCAAGTCAACATA  991

seq1  TCAATGAGAAGTCATACCCAACTTTTAAAACTTCTTTAGCCCACCGAGAA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGAAGTCATACCCAACTTTTAAAACTTCTTTAGCCCACCGAGAA  1041

seq1  AGGGTGATTTTCCCAAGTTAGCAAAATGGCTTATCTCTCCTTCATTAGGA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATTTTCCCAAGTTAGCAAAATGGCTTATCTCTCCTTCATTAGGA  1091

seq1  CGTTTAGAAAAATGTTCAGGCTTTAATGCAGTATGAAACTGAGTCCTACT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAGAAAAATGTTCAGGCTTTAATGCAGTATGAAACTGAGTCCTACT  1141

seq1  CTTGGAATTC  1141
      ||||||||||
seq2  CTTGGAATTC  1151