BAC Information

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BAC

Clone NameB6Ng01-213O19
Chromosome8 (Build37)
Map Location 17,689,507 - 17,879,229
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O19.bB6Ng01-213O19.g
ACCGA031312GA031313
length1,173890
definitionB6Ng01-213O19.b B6Ng01-213O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,689,507 - 17,690,676)(17,878,346 - 17,879,229)
sequence
gaattccaatttttatcaatacttgcataaatgcacaggcacacatacac
acaaattcaggtcaatcatgattgtcttttataggctacatctcagattg
ttctatgtgttgactcttccctaaaattaacactaagatgtgaagtgact
gaaaatgcacatcactgaagttctctacaagcctttctggttctacctac
ttgttccattgcttaatgcttccatactcctgatgtgcaagaggagtctg
caggccagctctaagtattgctgttctgcatatttgagcatcaatggcat
aggccagtgcgtaaatgtgtttgttgccaagccggacagcctgagtttag
tcattgcaacacacatgttagaaagagatacttggttcctacaaagtatt
caacaagtgttctctgtctctgtctctcagtctctgtctctctgtctatt
tttctctctcacacatacagacacatacagacaaacagacacacacaccg
ccaattccaatgtaaaaacaatataaatctctgtgactgaagagatcttc
cccaatggtctagtatactaacatcaccttatcacaggcacacatgcaca
gaaatgtgccaaaacacaaactcttcaagaatactgaagacagcgagtct
tctgcaatacttaccattctgttttacattaaaatgaaaccaaatgggaa
aaagaagacaaactgagctaacccatcagcacatgtgaaaccaaagcaca
ttaacaccagctcatcacgcatcactccaagtattgtgtacagaagactt
gccaactctgagccacactatgagctatccttatctttctgaaagcaaat
gttcttagaagaaaaaaatgaagtcccgttttccccttaagattcatctc
ctatgtttttttttttctctttttctctacacctttttttttttctgtca
tttttagtctcctggaatagtgattacagagtcttttcccaaaaatgtgt
tagtacagttttcccagggcatgtggcaatgagccctgtatgcctaattc
cttttgcctattttgaagaatattttatacagttgtctgaggaggataaa
tatttgaatgatgtcagcaacacaaaggctaaagacagctaacaagctaa
gtccatttagagaatgaagagaa

gaattcaatgctttctttcaaacttcttgggcaccaggtatgcaaacaaa
acactcatataaataaaattaaatcattttttttacaaaaagctacatgg
tatagatcagttaaacatatgaagtcttgatatgtttatatgatatgaag
aaaaagggattttgtgggagggagtggaaataagagcacagaatatgcag
tgggtttttgattaaagaatattacatttataaggagttgaaaaagaata
aacaagatttgtcacttattcaactctttcaatgtatgtacaactactac
aagtatataattccaaaagtgaattagcttcatagtagggaatcaaattg
agaaactaataaaaggattcccatgtcaagccaaggtcatattctatttt
ctttatatgcacagtggctattactttgctagatagaattaaaagtatgt
cttgagaaataaatacagggtggcattagtcccattactcattgctaact
tttaccatcttagacaacactgggtattttatcatgaagatgtagctcat
ggtacagctgatggttcgtgatagcaatggcacttagaacaaaggatgct
ctatcctttttgggggggttggctggatatagtctggcaattagacagtt
gttgcttgttctatatgatttgatatcagtggagacactgcaaaatgaaa
attctgcagtctgatcttcacactggtggtgatttaatccatcatggaca
tgtgagaaagatcccaatagaaactttagataattgaggcccacttgaac
tcccatatttggttattttttattatatataccttacaatgtctctataa
tctggaagataaaattctcccaagtcagagacccctctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17689507_17690676
seq2: B6Ng01-213O19.b_48_1220

seq1  GAATTCCAATTTTTATCAATACTTGCATAAATGCACAGGCACACATACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTTTATCAATACTTGCATAAATGCACAGGCACACATACAC  50

seq1  ACAAATTCAGGTCAATCATGATTGTCTTTTATAGGCTACATCTCAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAGGTCAATCATGATTGTCTTTTATAGGCTACATCTCAGATTG  100

seq1  TTCTATGTGTTGACTCTTCCCTAAAATTAACACTAAGATGTGAAGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGTTGACTCTTCCCTAAAATTAACACTAAGATGTGAAGTGACT  150

seq1  GAAAATGCACATCACTGAAGTTCTCTACAAGCCTTTCTGGTTCTACCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCACATCACTGAAGTTCTCTACAAGCCTTTCTGGTTCTACCTAC  200

seq1  TTGTTCCATTGCTTAATGCTTCCATACTCCTGATGTGCAAGAGGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCATTGCTTAATGCTTCCATACTCCTGATGTGCAAGAGGAGTCTG  250

seq1  CAGGCCAGCTCTAAGTATTGCTGTTCTGCATATTTGAGCATCAATGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCTCTAAGTATTGCTGTTCTGCATATTTGAGCATCAATGGCAT  300

seq1  AGGCCAGTGCGTAAATGTGTTTGTTGCCAAGCCGGACAGCCTGAGTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTGCGTAAATGTGTTTGTTGCCAAGCCGGACAGCCTGAGTTTAG  350

seq1  TCATTGCAACACACATGTTAGAAAGAGATACTTGGTTCCTACAAAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAACACACATGTTAGAAAGAGATACTTGGTTCCTACAAAGTATT  400

seq1  CAACAAGTGTTCTCTGTCTCTGTCTCTCAGTCTCTGTCTCTCTGTCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTGTTCTCTGTCTCTGTCTCTCAGTCTCTGTCTCTCTGTCTATT  450

seq1  TTTCTCTCTCACACATACAGACACATACAGACAAACAGACACACACACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCACACATACAGACACATACAGACAAACAGACACACACACCG  500

seq1  CCAATTCCAATGTAAAAACAATATAAATCTCTGTGACTGAAGAGATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCAATGTAAAAACAATATAAATCTCTGTGACTGAAGAGATCTTC  550

seq1  CCCAATGGTCTAGTATACTAACATCACCTTATCACAGGCACACATGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGTCTAGTATACTAACATCACCTTATCACAGGCACACATGCACA  600

seq1  GAAATGTGCCAAAACACAAACTCTTCAAGAATACTGAAGACAGCGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGCCAAAACACAAACTCTTCAAGAATACTGAAGACAGCGAGTCT  650

seq1  TCTGCAATACTTACCATTCTGTTTTACATTAAAATGAAACCAAATGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATACTTACCATTCTGTTTTACATTAAAATGAAACCAAATGGGAA  700

seq1  AAAGAAGACAAACTGAGCTAACCCATCAGCACATGTGAAACCAAAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACAAACTGAGCTAACCCATCAGCACATGTGAAACCAAAGCACA  750

seq1  TTAACACCAGCTCATCACGCATCACTCCAAGTATTGTGTACAGAAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCAGCTCATCACGCATCACTCCAAGTATTGTGTACAGAAGACTT  800

seq1  GCCAACTCTGAGCCACACTATGAGCTATCCTTATCTTTCTGAAAGCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCTGAGCCACACTATGAGCTATCCTTATCTTTCTGAAAGCAAAT  850

seq1  GTTCTTAGAAGAAAAAAATGAAGTCCCGTTTTCCCCTTAAGATTCATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGAAGAAAAAAATGAAGTCCCGTTTTCCCCTTAAGATTCATCTC  900

seq1  CTATG-TTTTTTTTTTCTCTTTTTCTCTACACC-TTTTTTTTTTCTGTCA  948
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTATGTTTTTTTTTTTCTCTTTTTCTCTACACCTTTTTTTTTTTCTGTCA  950

seq1  TTTTTAGTCTCCTGGAATAGTGATTACAGAGTC-TTTCCCAAAAATGTGG  997
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TTTTTAGTCTCCTGGAATAGTGATTACAGAGTCTTTTCCCAAAAATGT-G  999

seq1  TAAGTACAGTTTTCCCAGGGCATGTGGC-ATGAGCCCTGTATGCCTAATT  1046
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAGTACAGTTTTCCCAGGGCATGTGGCAATGAGCCCTGTATGCCTAATT  1049

seq1  CCTTTTGCCTA-TTTGAAGATAATTTTATACAGTTTGTCCTGAGGAGGAT  1095
      ||||||||||| ||||||||  ||||||||||| |||| |||||||||||
seq2  CCTTTTGCCTATTTTGAAGAATATTTTATACAG-TTGT-CTGAGGAGGAT  1097

seq1  -AATATTGGAATGATGTCAGCAACACAGAGGCTAAAG-CAGCT-ACAAGC  1142
       |||||| ||||||||||||||||||| ||||||||| ||||| ||||||
seq2  AAATATTTGAATGATGTCAGCAACACAAAGGCTAAAGACAGCTAACAAGC  1147

seq1  TTAGTCCCCTTTAGAGATGGAAAGAGAA  1170
      | ||| || ||||||||  | |||||||
seq2  TAAGT-CCATTTAGAGAATG-AAGAGAA  1173


seq1: chr8_17878346_17879229
seq2: B6Ng01-213O19.g_69_958 (reverse)

seq1  ATAGA-GGGTCTCTGACTCTGGAAGATTTTATCTTCCAGA-TATAGAGAC  48
      ||||| ||||||||||||  |||  ||||||||||||||| |||||||||
seq2  ATAGAGGGGTCTCTGACTTGGGAGAATTTTATCTTCCAGATTATAGAGAC  50

seq1  ATTGTAAGGTATATAT-ATAAAAAATAACC-AATATGGGAGTTCAAGTGG  96
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  ATTGTAAGGTATATATAATAAAAAATAACCAAATATGGGAGTTCAAGTGG  100

seq1  GCCTC-ATTATCTAAAGTTTCTATTGGGATC-TTCTCACATGTCCATGAT  144
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCTCAATTATCTAAAGTTTCTATTGGGATCTTTCTCACATGTCCATGAT  150

seq1  GGATTAAATCACCACCAGTGTGAAGATCAGACTGCAGAATTTTCATTTTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAATCACCACCAGTGTGAAGATCAGACTGCAGAATTTTCATTTTG  200

seq1  CAGTGTCTCCACTGATATCAAATCATATAGAACAAGCAACAACTGTCTAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCCACTGATATCAAATCATATAGAACAAGCAACAACTGTCTAA  250

seq1  TTGCCAGACTATATCCAGCCAACCCCCCCAAAAAGGATAGAGCATCCTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGACTATATCCAGCCAACCCCCCCAAAAAGGATAGAGCATCCTTT  300

seq1  GTTCTAAGTGCCATTGCTATCACGAACCATCAGCTGTACCATGAGCTACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGTGCCATTGCTATCACGAACCATCAGCTGTACCATGAGCTACA  350

seq1  TCTTCATGATAAAATACCCAGTGTTGTCTAAGATGGTAAAAGTTAGCAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGATAAAATACCCAGTGTTGTCTAAGATGGTAAAAGTTAGCAAT  400

seq1  GAGTAATGGGACTAATGCCACCCTGTATTTATTTCTCAAGACATACTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGGGACTAATGCCACCCTGTATTTATTTCTCAAGACATACTTTT  450

seq1  AATTCTATCTAGCAAAGTAATAGCCACTGTGCATATAAAGAAAATAGAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATCTAGCAAAGTAATAGCCACTGTGCATATAAAGAAAATAGAAT  500

seq1  ATGACCTTGGCTTGACATGGGAATCCTTTTATTAGTTTCTCAATTTGATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTGGCTTGACATGGGAATCCTTTTATTAGTTTCTCAATTTGATT  550

seq1  CCCTACTATGAAGCTAATTCACTTTTGGAATTATATACTTGTAGTAGTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTATGAAGCTAATTCACTTTTGGAATTATATACTTGTAGTAGTTG  600

seq1  TACATACATTGAAAGAGTTGAATAAGTGACAAATCTTGTTTATTCTTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATTGAAAGAGTTGAATAAGTGACAAATCTTGTTTATTCTTTTT  650

seq1  CAACTCCTTATAAATGTAATATTCTTTAATCAAAAACCCACTGCATATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTTATAAATGTAATATTCTTTAATCAAAAACCCACTGCATATTC  700

seq1  TGTGCTCTTATTTCCACTCCCTCCCACAAAATCCCTTTTTCTTCATATCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTTATTTCCACTCCCTCCCACAAAATCCCTTTTTCTTCATATCA  750

seq1  TATAAACATATCAAGACTTCATATGTTTAACTGATCTATACCATGTAGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATATCAAGACTTCATATGTTTAACTGATCTATACCATGTAGCT  800

seq1  TTTTGTAAAAAAAATGATTTAATTTTATTTATATGAGTGTTTTGTTTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAAAAAAATGATTTAATTTTATTTATATGAGTGTTTTGTTTGCA  850

seq1  TACCTGGTGCCCAAGAAGTTTGAAAGAAAGCATTGAATTC  884
      ||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTGCCCAAGAAGTTTGAAAGAAAGCATTGAATTC  890


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