BAC Information

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BAC

Clone NameB6Ng01-214F11
Chromosome8 (Build37)
Map Location 101,517,696 - 101,677,636
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214F11.bB6Ng01-214F11.g
ACCGA031616GA031617
length1,1651,029
definitionB6Ng01-214F11.b B6Ng01-214F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,676,491 - 101,677,636)(101,517,696 - 101,518,371)
sequence
gaattctcttttctgtttatgtgtttctgtttttatttttgttttgtttt
ccttgtttatgagatggggtgtttctgtgcagccctggttatcttgggac
tctatagaccagtctgactttaaacttatagatacacatgactctgcctc
ccaagtgctggaataaaagcatgctccaccaccgtcatccagctatgcac
agagctctttgttaatgctttgtctatgcagcttacttgttttgtggcaa
tgagacgttcacttgatattcctgggctccagttcccttcttgggaaaaa
gtgaataataaagccaatggcataggagtgactgcaagaggaaaggccat
gttttatcactgaataactgccaattggcatcatcaacttatataacaga
atctgtgtttgtcatatgttttactgtgcagatatacctttattcattta
ttatttcacatgtagaaagctgtgaaataataaataagcattcccatttt
ttaaaacatctttgaaactctttgcagtcattctcccttactcagttaaa
aaaaagtttataagaacatatcttttcctaagaaaccttcaaactaacta
ctccttgtgagttttttttctatttcctttaaggtaaatctctaacctaa
aaatgataaatgctcttttttttttttttccattctgtcagttgtgcatt
ctcacagcggctgcttctgtcttaacacttgcacagaaatgaaatgtggg
agaaaatatgcataaaatcaagccagagacaatcagagatttcctctcca
actctaggtccctacagtattgtctttccagctaatatgtactctgcaga
cttggagctggggtttggtgatttacatgggaaagatcaatggggttgcc
ttgcagagaagaacataacaatcactcctttcattctaaagccagaaaaa
cccagaggtgttagatgtgagcctcctgctttttgggttattgtttggac
acaaatggtcattcagagctgttcttgattgaaatatgttaatctgcctc
tgaccctggccagagttagctgcagttcttgccatttcctctcctgcaaa
tggttggaacccatatacctgccttgtatggagcctgtccctatgatgac
aaagaacaggcggtg

gaattcttggggagggctcagatgaggctctggtttttgtttgtttgttt
agttttcctttgttttgtccctgtaacatttacaagaatgataataaagg
aacatgtttttttttaattatttttataatgcatttcgttataagagcat
gaatttcgatttttcacctggatgactctctaaggtgggtccactcagga
gcacacaggtctcagaagcagcagagcagctgggacagggtcctactcct
ccatctgcacccaggatgtggggctgttcctcagctgtgcactgctcttg
ccaggatagaggtggtcttccaggagtgctgacacaggcttacaaactca
cagaaggaacgagctccagccaaagacagcaagaacatctaacaacagag
attaccagatggcaaaaggcaaatgctgaaaaagtaaattgccgaaagca
atttacagattcaatccaatccccttcaaaattcaaactcaattcttcac
agagttagaaagggcaatttgcaaattcatttggaatagtaaaaaaacta
ggatagcaaaaactattctcaagaataaaagaatttgtggaggaatcacc
atcgctgacctcaagctgtaagacaaagcaattgtgataaaaactgcatg
gtactggtacaatgacagaacagattaatggaatagaattgaagactcag
aaatgtacccacacacctgtggtcacttgatctttgacagagtagctaaa
actatcctgtggaaaaaagacagcattttcaataaatggtgctggctgaa
ctggcggttagcatgaagaagaatgcacatcaaaccgtacttacctcctt
gtacaaagctcaagtcgaagtgggatcaagaacctccacataaaccagag
acactgaaagttatagaggagaaagtggggacacctcaaacatatgggca
cagggaaaaattcctgaagacaccaatggctgtgctgtaagatcaagaat
gacaaacgggacctcacaaaaatgccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101676491_101677636
seq2: B6Ng01-214F11.b_47_1211 (reverse)

seq1  CACCGCCTGTTCTTTTTTCATCTATTGGGCCA-GCTCC-TAC-AGGCA-G  46
      |||||||||||| ||| ||||| || ||| || ||||| ||| ||||| |
seq2  CACCGCCTGTTC-TTTGTCATC-ATAGGGACAGGCTCCATACAAGGCAGG  48

seq1  TCTCTGGTTTCCAACCATTTGCAG--CAGGGAATGCCATGAACTGCAGCT  94
      | | ||| ||||||||||||||||   ||| |||| || |||||||||||
seq2  TATATGGGTTCCAACCATTTGCAGGAGAGGAAATGGCAAGAACTGCAGCT  98

seq1  -ACTCTTGCCAGGGTCAGA-GCAGA-TAACATTATTCATTCA--GACAGC  139
       ||||| |||||||||||| ||||| ||||||  |||| |||   |||||
seq2  AACTCTGGCCAGGGTCAGAGGCAGATTAACATATTTCAATCAAGAACAGC  148

seq1  TCTGATGG--CATTTGTGTCCAAACAATAA-CCTAAAAGCAGGAGGCTCA  186
      |||||  |  |||||||||||||||||||| || ||||||||||||||||
seq2  TCTGAATGACCATTTGTGTCCAAACAATAACCCAAAAAGCAGGAGGCTCA  198

seq1  CATCTACCACCTCTGGG-TTTTCTGGCTTTAGAATGGAA-GAGTGTTTG-  233
      |||||| |||||||||| |||||||||||||||||| || ||||| ||| 
seq2  CATCTAACACCTCTGGGTTTTTCTGGCTTTAGAATGAAAGGAGTGATTGT  248

seq1  TATGTTCTTCTCTGCAAGGC-ACCCCATTGATCTTT-CCATGTAAATCAC  281
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TATGTTCTTCTCTGCAAGGCAACCCCATTGATCTTTCCCATGTAAATCAC  298

seq1  CAAA-CCCAGCTCCAAGTCTGCAGAGTACATATTAGCTGG-AAGACAATA  329
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAACCCCAGCTCCAAGTCTGCAGAGTACATATTAGCTGGAAAGACAATA  348

seq1  CTGTAGGGACCTAGAGTTGGAGAGGAAATCTCTGATTGTCTCTGGCTTGA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGACCTAGAGTTGGAGAGGAAATCTCTGATTGTCTCTGGCTTGA  398

seq1  TTTTATGCATATTTTCTCCCACATTTCATTTCTGTGCAAGTGTTAAGACA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCATATTTTCTCCCACATTTCATTTCTGTGCAAGTGTTAAGACA  448

seq1  GAAGCAGCCGCTGTGAGAATGCACAACTGACAGAATGGAAAAAAAAAAAA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCCGCTGTGAGAATGCACAACTGACAGAATGGAAAAAAAAAAAA  498

seq1  AAGAGCATTTATCATTTTTAGGTTAGAGATTTACCTTAAAGGAAATAGAA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTTATCATTTTTAGGTTAGAGATTTACCTTAAAGGAAATAGAA  548

seq1  AAAAAACTCACAAGGAGTAGTTAGTTTGAAGGTTTCTTAGGAAAAGATAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCACAAGGAGTAGTTAGTTTGAAGGTTTCTTAGGAAAAGATAT  598

seq1  GTTCTTATAAACTTTTTTTTAACTGAGTAAGGGAGAATGACTGCAAAGAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATAAACTTTTTTTTAACTGAGTAAGGGAGAATGACTGCAAAGAG  648

seq1  TTTCAAAGATGTTTTAAAAAATGGGAATGCTTATTTATTATTTCACAGCT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGATGTTTTAAAAAATGGGAATGCTTATTTATTATTTCACAGCT  698

seq1  TTCTACATGTGAAATAATAAATGAATAAAGGTATATCTGCACAGTAAAAC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATGTGAAATAATAAATGAATAAAGGTATATCTGCACAGTAAAAC  748

seq1  ATATGACAAACACAGATTCTGTTATATAAGTTGATGATGCCAATTGGCAG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAAACACAGATTCTGTTATATAAGTTGATGATGCCAATTGGCAG  798

seq1  TTATTCAGTGATAAAACATGGCCTTTCCTCTTGCAGTCACTCCTATGCCA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGTGATAAAACATGGCCTTTCCTCTTGCAGTCACTCCTATGCCA  848

seq1  TTGGCTTTATTATTCACTTTTTCCCAAGAAGGGAACTGGAGCCCAGGAAT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTATTATTCACTTTTTCCCAAGAAGGGAACTGGAGCCCAGGAAT  898

seq1  ATCAAGTGAACGTCTCATTGCCACAAAACAAGTAAGCTGCATAGACAAAG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGAACGTCTCATTGCCACAAAACAAGTAAGCTGCATAGACAAAG  948

seq1  CATTAACAAAGAGCTCTGTGCATAGCTGGATGACGGTGGTGGAGCATGCT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAAAGAGCTCTGTGCATAGCTGGATGACGGTGGTGGAGCATGCT  998

seq1  TTTATTCCAGCACTTGGGAGGCAGAGTCATGTGTATCTATAAGTTTAAAG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCAGCACTTGGGAGGCAGAGTCATGTGTATCTATAAGTTTAAAG  1048

seq1  TCAGACTGGTCTATAGAGTCCCAAGATAACCAGGGCTGCACAGAAACACC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGGTCTATAGAGTCCCAAGATAACCAGGGCTGCACAGAAACACC  1098

seq1  CCATCTCATAAACAAGGAAAACAAAACAAAAATAAAAACAGAAACACATA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCATAAACAAGGAAAACAAAACAAAAATAAAAACAGAAACACATA  1148

seq1  AACAGAAAAGAGAATTC  1146
      |||||||||||||||||
seq2  AACAGAAAAGAGAATTC  1165


seq1: chr8_101517696_101518371
seq2: B6Ng01-214F11.g_66_741

seq1  GAATTCTTGGGGAGGGCTCAGATGAGGCTCTGGTTTTTGTTTGTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGAGGGCTCAGATGAGGCTCTGGTTTTTGTTTGTTTGTTT  50

seq1  AGTTTTCCTTTGTTTTGTCCCTGTAACATTTACAAGAATGATAATAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCTTTGTTTTGTCCCTGTAACATTTACAAGAATGATAATAAAGG  100

seq1  AACATGTTTTTTTTTAATTATTTTTATAATGCATTTCGTTATAAGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTTTTTTTAATTATTTTTATAATGCATTTCGTTATAAGAGCAT  150

seq1  GAATTTCGATTTTTCACCTGGATGACTCTCTAAGGTGGGTCCACTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCGATTTTTCACCTGGATGACTCTCTAAGGTGGGTCCACTCAGGA  200

seq1  GCACACAGGTCTCAGAAGCAGCAGAGCAGCTGGGACAGGGTCCTACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGTCTCAGAAGCAGCAGAGCAGCTGGGACAGGGTCCTACTCCT  250

seq1  CCATCTGCACCCAGGATGTGGGGCTGTTCCTCAGCTGTGCACTGCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGCACCCAGGATGTGGGGCTGTTCCTCAGCTGTGCACTGCTCTTG  300

seq1  CCAGGATAGAGGTGGTCTTCCAGGAGTGCTGACACAGGCTTACAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATAGAGGTGGTCTTCCAGGAGTGCTGACACAGGCTTACAAACTCA  350

seq1  CAGAAGGAACGAGCTCCAGCCAAAGACAGCAAGAACATCTAACAACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAACGAGCTCCAGCCAAAGACAGCAAGAACATCTAACAACAGAG  400

seq1  ATTACCAGATGGCAAAAGGCAAATGCTGAAAAAGTAAATTGCCGAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGATGGCAAAAGGCAAATGCTGAAAAAGTAAATTGCCGAAAGCA  450

seq1  ATTTACAGATTCAATCCAATCCCCTTCAAAATTCAAACTCAATTCTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGATTCAATCCAATCCCCTTCAAAATTCAAACTCAATTCTTCAC  500

seq1  AGAGTTAGAAAGGGCAATTTGCAAATTCATTTGGAATAGTAAAAAAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGAAAGGGCAATTTGCAAATTCATTTGGAATAGTAAAAAAACTA  550

seq1  GGATAGCAAAAACTATTCTCAAGAATAAAAGAATTTGTGGAGGAATCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCAAAAACTATTCTCAAGAATAAAAGAATTTGTGGAGGAATCACC  600

seq1  ATCGCTGACCTCAAGCTGTAAGACAAAGCAATTGTGATAAAAACTGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGACCTCAAGCTGTAAGACAAAGCAATTGTGATAAAAACTGCATG  650

seq1  GTACTGGTACAATGACAGAACAGATT  676
      ||||||||||||||||||||||||||
seq2  GTACTGGTACAATGACAGAACAGATT  676


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