BAC Information

Click to search

BAC

Clone NameB6Ng01-214K20
Chromosome8 (Build37)
Map Location 61,014,550 - 61,015,665
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream geneGalnt7, LOC100040634, LOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214K20.bB6Ng01-214K20.g
ACCGA031865GA031866
length1,2021,115
definitionB6Ng01-214K20.b B6Ng01-214K20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcataaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gaatttgtttatataatggattacattgatggatttttgtatattaaacc
atccctgcatccctggaataaaacctccttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatatacataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactca
attagatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgggctttttttggctgggagactattaataactgcttctatttctt
taggggatatgggactgtttagaaggtcaacttgatcctgattcaacttt
ggtacctggtatctgtccagaaatttgtccatttcgtccaggttttccag
ttttgttaagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtctcccttttcatttctgattttgttaatt
aggatgctttccctatgccctctagtgagtctagctaagggtttatctat
cttgttgattttctcaaagaaccaactcctcgtttggttaattctttgaa
tagttcttcttcttcattaacctgatcttgatttaactttggtacctggt
atctgtctagaaacttctccatttcatccaggttctccattttgttgagt
atagctttttgtagaaaggatctcatggtgttttggatttctttaagatc
tgttgtatatctccctttacatttctaatttgttattaggatgctttccc
tatgccttctagtgagtctagctagggtttatctatctgtgtttcttcaa
agaaccagctccttgttgttgatcttgaataggtctcgttccactggatg
atttgtcccggagctgatattccaggctgtcacatcccctcttgggtatt
gcctttcattgttcagagcttagaggtggtgtcactacgtcagacaaggt
at

gaattcatctgtttctgtcccttgttgattaccaatgttcccataagaca
gacaactttagtgcatgcagaagaaaaacggacataagaacttagcaggg
acaaaccaaacactgaagtaacagcaccactctgtctgatgctgaatcca
tacctgagcgcaaagcatctctctgaatgctctcatagtcatgccagtct
tttcttctcagaccatctgtccaggaatagaattgcccatctcctaggcc
cagtggaaatgtctgtggagaaagaaagtattcaagcataaaaaaggaag
aattttgttctgcatggatgataagcacagcagggcccagaacaagcaat
gcaagaagatttgttaattaaatggctcctctgaacattttgagatgaaa
accattgctattgacctaaaaaatgcatactccaaaactttattttaaca
tttaaaatgagaacttgatcctcccacaactccagccataaaacatttta
tttaatctggagattttgttgactataccccacccttctatttgccttca
tctgcttaatgagtagatatagatctactgaattaacttggtatattatt
aataaagtttgatatgtgttcttcaaatatatttagatgttttttaataa
tagtaatggatgttcatagagtgctcactatgagagtagtactatactaa
atgctttaggacacaacttttaagtccttataacaacattgggtgaaaaa
ttcccattgtcctggaaattagactacagcaaagagaattacatcaaatt
tgaaagcatttttctcaagccaaggtttgagttcactctttgaagcctga
tattatggccttaattgacaccaaagtattgtatttccatttgatgtcta
ctaaagggatatttcatgtttacactaaaatgtcagatgggcaccctgct
ctaactgtactcagacccacatctatgtgtacctcaaacccagtgtgttg
gatgtcaacgtgtacacttcttcttgcttacattgctagtatcaccccat
atcatgaattatggtcaagaatggcaataagaaccaaagaatacttgaag
aatttattttccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61014550_61015665
seq2: B6Ng01-214K20.g_66_1180

seq1  GAATTCATCTGTTTCTGTCCCTTGTTGATTACCAATGTTCCCATAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTTTCTGTCCCTTGTTGATTACCAATGTTCCCATAAGACA  50

seq1  GACAACTTTAGTGCATGCAGAAGAAAAACGGACATAAGAACTTAGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTTTAGTGCATGCAGAAGAAAAACGGACATAAGAACTTAGCAGGG  100

seq1  ACAAACCAAACACTGAAGTAACAGCACCACTCTGTCTGATGCTGAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAACACTGAAGTAACAGCACCACTCTGTCTGATGCTGAATCCA  150

seq1  TACCTGAGCGCAAAGCATCTCTCTGAATGCTCTCATAGTCATGCCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAGCGCAAAGCATCTCTCTGAATGCTCTCATAGTCATGCCAGTCT  200

seq1  TTTCTTCTCAGACCATCTGTCCAGGAATAGAATTGCCCATCTCCTAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCAGACCATCTGTCCAGGAATAGAATTGCCCATCTCCTAGGCC  250

seq1  CAGTGGAAATGTCTGTGGAGAAAGAAAGTATTCAAGCATAAAAAAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAATGTCTGTGGAGAAAGAAAGTATTCAAGCATAAAAAAGGAAG  300

seq1  AATTTTGTTCTGCATGGATGATAAGCACAGCAGGGCCCAGAACAAGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTCTGCATGGATGATAAGCACAGCAGGGCCCAGAACAAGCAAT  350

seq1  GCAAGAAGATTTGTTAATTAAATGGCTCCTCTGAACATTTTGAGATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGATTTGTTAATTAAATGGCTCCTCTGAACATTTTGAGATGAAA  400

seq1  ACCATTGCTATTGACCTAAAAAATGCATACTCCAAAACTTTATTTTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTATTGACCTAAAAAATGCATACTCCAAAACTTTATTTTAACA  450

seq1  TTTAAAATGAGAACTTGATCCTCCCACAACTCCAGCCATAAAACATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAGAACTTGATCCTCCCACAACTCCAGCCATAAAACATTTTA  500

seq1  TTTAATCTGGAGATTTTGTTGACTATACCCCACCCTTCTATTTGCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTGGAGATTTTGTTGACTATACCCCACCCTTCTATTTGCCTTCA  550

seq1  TCTGCTTAATGAGTAGATATAGATCTACTGAATTAACTTGGTATATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTAATGAGTAGATATAGATCTACTGAATTAACTTGGTATATTATT  600

seq1  AATAAAGTTTGATATGTGTTCTTCAAATATATTTAGATGTTTTTTAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTTTGATATGTGTTCTTCAAATATATTTAGATGTTTTTTAATAA  650

seq1  TAGTAATGGATGTTCATAGAGTGCTCACTATGAGAGTAGTACTATACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGGATGTTCATAGAGTGCTCACTATGAGAGTAGTACTATACTAA  700

seq1  ATGCTTTAGGACACAACTTTTAAGTCCTTATAACAACATTGGGTGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAGGACACAACTTTTAAGTCCTTATAACAACATTGGGTGAAAAA  750

seq1  TTCCCATTGTCCTGGAAATTAGACTACAGCAAAGAGAATTACATCAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGTCCTGGAAATTAGACTACAGCAAAGAGAATTACATCAAATT  800

seq1  TGAAAGCATTTTTCTCAAGCCAAGGTTTGAGTTCACTCTTTGAAGCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATTTTTCTCAAGCCAAGGTTTGAGTTCACTCTTTGAAGCCTGA  850

seq1  TATTATGGCCTTAATTGACACCAAAGTATTGTA-TTCCATTTGATGTCTA  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTATGGCCTTAATTGACACCAAAGTATTGTATTTCCATTTGATGTCTA  900

seq1  CTAAA-GGATATTTCATGTTTACACTAAAATGTCAGATGGGCACCCTGCC  948
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAAAGGGATATTTCATGTTTACACTAAAATGTCAGATGGGCACCCTGCT  950

seq1  CTAACTGTACTCAGGACCCACATCTATGTGTACCTCAAACCCAGTGTGTT  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTACTCA-GACCCACATCTATGTGTACCTCAAACCCAGTGTGTT  999

seq1  GGGATGTCAACGTGTACACTTC-TCTTGCTTACATTGCTAGTATCACCCC  1047
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -GGATGTCAACGTGTACACTTCTTCTTGCTTACATTGCTAGTATCACCCC  1048

seq1  ATATCATGAATTATGTTCAAGAATTGCAATAAGAACCAAAGATTACTTTG  1097
      ||||||||||||||| |||||||| ||||||||||||||||| |||||  
seq2  ATATCATGAATTATGGTCAAGAATGGCAATAAGAACCAAAGAATACTT--  1096

seq1  AAAGAAATTTATTTCCACA  1116
       ||||| ||  ||||||||
seq2  GAAGAATTTATTTTCCACA  1115


| Home | SequenceCutter | Blast | Download |