BAC Information

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BAC

Clone NameB6Ng01-219B05
Chromosome8 (Build37)
Map Location 5,160,191 - 5,275,386
singlet/doubletdoublet
Overlap genenone
Upstream geneB130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219B05.bB6Ng01-219B05.g
ACCGA035025GA035026
length1,0321,171
definitionB6Ng01-219B05.b B6Ng01-219B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,160,191 - 5,161,011)(5,274,204 - 5,275,386)
sequence
gaattcaccttttttctttttttccatattgacattttcactgatggtac
aagtacaatgatgcatagaacaagaccaaggtagtgaaaacaagctatac
taactaaactatagtacttaggctctctactgccatacactcatgataaa
cacaaagaaacaaatacaaaacttccactgaaataagcccatggtaagca
ataaaaagttaagaccttattgagtctcagagtttaatactaaagagtat
attaaacatattccatgtgatttaacaggaagtgggtatgttatgcatct
tccaattcccaaagcattggtctattgggaaatctctgcaaatactttgc
cagcagcatgtggatcagagaggcaagaatggtttagccagtaccaatag
acagtgttgatgacaactttgatagtttgatactctgtagtttattttag
gtgttagggtccaggattcaccccacaaaccacacaaacattgatctcag
tcagccaagaatcatttattgaatgaacaccctaagattgattggtcaca
gcgttctggactgagttatgacgctgaagatctttctctgtcagcttata
aatgcaaaaacctgcaaaacccacgatgagctcatacacaggtgcaggaa
gtgcctctaagtggtcagttctgactcaagccattttagatataacagtt
catattgacctttaatgtgatgggtcttatgtaaagatttgtagaatttc
ttaagagtcaccaatattatacagaacataacaggatatgtgatcagcat
gattttgctctgagtcaagttatttttctgtgttaatgaatggcaggcat
actacagcaataataaatagctggcaggcatagaacaaaatggctacagt
tatgctggagtgggggcggggagacctcaaccttagatatatttaagaat
atcacgatttggaaaaatgtttctggggattattaactcaatcccatgag
cacaccaagcttaagacatgattacattggaa
gaattccagcatttatctggctgtcgctcagttcactttttattggtaca
atgccacctgtgttcagagtggggcttcagttgacctggatacattccca
caaacttacccagaggtgattctaatccagccatctgacaatggattttc
tgtcaaaataattcatcacaaaatggtctcagtatagatctttcccacaa
caggtttcagaaagaccctataaaatataaaaggtcaggcaggttcctgg
atgctatctctccatgctccaaagcttgaccactccttgtactgagtgcc
tctgtgcactacagtaactcattagcaactctgtctctgaacactgaatt
gtacttgtccatctcttcagacaataagatttcttagaacatagtatgtt
gaggattagaaaataaacaccagcattttttcatacactagaaaattatg
gctgttactgctatcccatgtggacattagtttctgatgatctcatttcc
taaataccatttgatttattgtgtaatattaaaatagaattttctaccta
tagcatcagttatgcagattggcttttctaggggaaaataaggagaaatg
atcagaattcctgaatttttaatttaattcagacagttcccacggaagta
taaagtattatttgttagctgaggttgatgaattctccacagattctcag
taattattctcagatatctattatgaggattcagaacactgccatgatgt
gctgactcagtcatttgtgtgaagcacaccctcccttttccttctctgag
ctctgaaatttcatcatgaaatatcttagctgattaatgcaccaaaatca
tattcaaattatctaaccactactatgttatattaaggcataaataaaaa
taatagtggcataatttctttgccaccttgtaggatattagtaacaacta
caagaaaatagggatatttctgtcttgatattccgttatctttttggctt
cagtgaaatacaaaaacctgcttcatggaaccgcacctctgtgattctgc
tgttgggctctttattgaagcgttataagcacacagaatgctttgttctg
cttgtgcagtttcttctgtatggatcatgcaaatggtctatatcctacct
tacgtgggaacatagccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5160191_5161011
seq2: B6Ng01-219B05.b_44_864

seq1  GAATTCACCTTTTTTCTTTTTTTCCATATTGACATTTTCACTGATGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTTTTCTTTTTTTCCATATTGACATTTTCACTGATGGTAC  50

seq1  AAGTACAATGATGCATAGAACAAGACCAAGGTAGTGAAAACAAGCTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATGATGCATAGAACAAGACCAAGGTAGTGAAAACAAGCTATAC  100

seq1  TAACTAAACTATAGTACTTAGGCTCTCTACTGCCATACACTCATGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAACTATAGTACTTAGGCTCTCTACTGCCATACACTCATGATAAA  150

seq1  CACAAAGAAACAAATACAAAACTTCCACTGAAATAAGCCCATGGTAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAAACAAATACAAAACTTCCACTGAAATAAGCCCATGGTAAGCA  200

seq1  ATAAAAAGTTAAGACCTTATTGAGTCTCAGAGTTTAATACTAAAGAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGTTAAGACCTTATTGAGTCTCAGAGTTTAATACTAAAGAGTAT  250

seq1  ATTAAACATATTCCATGTGATTTAACAGGAAGTGGGTATGTTATGCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACATATTCCATGTGATTTAACAGGAAGTGGGTATGTTATGCATCT  300

seq1  TCCAATTCCCAAAGCATTGGTCTATTGGGAAATCTCTGCAAATACTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCCAAAGCATTGGTCTATTGGGAAATCTCTGCAAATACTTTGC  350

seq1  CAGCAGCATGTGGATCAGAGAGGCAAGAATGGTTTAGCCAGTACCAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATGTGGATCAGAGAGGCAAGAATGGTTTAGCCAGTACCAATAG  400

seq1  ACAGTGTTGATGACAACTTTGATAGTTTGATACTCTGTAGTTTATTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGATGACAACTTTGATAGTTTGATACTCTGTAGTTTATTTTAG  450

seq1  GTGTTAGGGTCCAGGATTCACCCCACAAACCACACAAACATTGATCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGGTCCAGGATTCACCCCACAAACCACACAAACATTGATCTCAG  500

seq1  TCAGCCAAGAATCATTTATTGAATGAACACCCTAAGATTGATTGGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAAGAATCATTTATTGAATGAACACCCTAAGATTGATTGGTCACA  550

seq1  GCGTTCTGGACTGAGTTATGACGCTGAAGATCTTTCTCTGTCAGCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTGGACTGAGTTATGACGCTGAAGATCTTTCTCTGTCAGCTTATA  600

seq1  AATGCAAAAACCTGCAAAACCCACGATGAGCTCATACACAGGTGCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAAACCTGCAAAACCCACGATGAGCTCATACACAGGTGCAGGAA  650

seq1  GTGCCTCTAAGTGGTCAGTTCTGACTCAAGCCATTTTAGATATAACAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTAAGTGGTCAGTTCTGACTCAAGCCATTTTAGATATAACAGTT  700

seq1  CATATTGACCTTTAATGTGATGGGTCTTATGTAAAGATTTGTAGAATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGACCTTTAATGTGATGGGTCTTATGTAAAGATTTGTAGAATTTC  750

seq1  TTAAGAGTCACCAATATTATACAGAACATAACAGGATATGTGATCAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTCACCAATATTATACAGAACATAACAGGATATGTGATCAGCAT  800

seq1  GATTTTGCTCTGAGTCAAGTT  821
      |||||||||||||||||||||
seq2  GATTTTGCTCTGAGTCAAGTT  821

seq1: chr8_5274204_5275386
seq2: B6Ng01-219B05.g_64_1234 (reverse)

seq1  CCAT-GCTATGCT-CCACGTAAGTAAGAATATAGGACCCAAATTTGCATG  48
      |||| |||||| | |||||||||  || ||||| ||||   |||||||||
seq2  CCATGGCTATGTTCCCACGTAAGGTAGGATATA-GACC---ATTTGCATG  46

seq1  AT-CATACCAGGAGAAACTGCAACAAGCAAGAACAAAAGCATTCTGTGTG  97
      || |||| ||| ||||||||| |||||| ||||| |||||||||||||||
seq2  ATCCATA-CAGAAGAAACTGC-ACAAGC-AGAAC-AAAGCATTCTGTGTG  92

seq1  CTTTATAAACGCCTTCAAATAAAGAGGCCAAACAGCAGAATCACAGAGGT  147
      | |||| |||| |||| |||||||| ||| ||||||||||||||||||||
seq2  C-TTAT-AACG-CTTC-AATAAAGA-GCCCAACAGCAGAATCACAGAGGT  137

seq1  GCGGTTCCATGAAGGCAGGGTTTTTGTATTTCACTGAAGCCAAAAAGATA  197
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  GCGGTTCCATGAA-GCA-GGTTTTTGTATTTCACTGAAGCCAAAAAGATA  185

seq1  ACGGAATATCAAGACAGAAATATCCCTATTTTCTTGTAGTTGTTACTAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAATATCAAGACAGAAATATCCCTATTTTCTTGTAGTTGTTACTAAT  235

seq1  ATCCTACAAGGTGGCAAAGAAATTATGCCACTATTATTTTTATTTATGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACAAGGTGGCAAAGAAATTATGCCACTATTATTTTTATTTATGCC  285

seq1  TTAATATAACATAGTAGTGGTTAGATAATTTGAATATGATTTTGGTGCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATAACATAGTAGTGGTTAGATAATTTGAATATGATTTTGGTGCAT  335

seq1  TAATCAGCTAAGATATTTCATGATGAAATTTCAGAGCTCAGAGAAGGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCTAAGATATTTCATGATGAAATTTCAGAGCTCAGAGAAGGAAA  385

seq1  AGGGAGGGTGTGCTTCACACAAATGACTGAGTCAGCACATCATGGCAGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGTGTGCTTCACACAAATGACTGAGTCAGCACATCATGGCAGTG  435

seq1  TTCTGAATCCTCATAATAGATATCTGAGAATAATTACTGAGAATCTGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATCCTCATAATAGATATCTGAGAATAATTACTGAGAATCTGTGG  485

seq1  AGAATTCATCAACCTCAGCTAACAAATAATACTTTATACTTCCGTGGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATCAACCTCAGCTAACAAATAATACTTTATACTTCCGTGGGAA  535

seq1  CTGTCTGAATTAAATTAAAAATTCAGGAATTCTGATCATTTCTCCTTATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAATTAAATTAAAAATTCAGGAATTCTGATCATTTCTCCTTATT  585

seq1  TTCCCCTAGAAAAGCCAATCTGCATAACTGATGCTATAGGTAGAAAATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTAGAAAAGCCAATCTGCATAACTGATGCTATAGGTAGAAAATTC  635

seq1  TATTTTAATATTACACAATAAATCAAATGGTATTTAGGAAATGAGATCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATATTACACAATAAATCAAATGGTATTTAGGAAATGAGATCAT  685

seq1  CAGAAACTAATGTCCACATGGGATAGCAGTAACAGCCATAATTTTCTAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTAATGTCCACATGGGATAGCAGTAACAGCCATAATTTTCTAGT  735

seq1  GTATGAAAAAATGCTGGTGTTTATTTTCTAATCCTCAACATACTATGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAAAATGCTGGTGTTTATTTTCTAATCCTCAACATACTATGTTC  785

seq1  TAAGAAATCTTATTGTCTGAAGAGATGGACAAGTACAATTCAGTGTTCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATCTTATTGTCTGAAGAGATGGACAAGTACAATTCAGTGTTCAG  835

seq1  AGACAGAGTTGCTAATGAGTTACTGTAGTGCACAGAGGCACTCAGTACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTTGCTAATGAGTTACTGTAGTGCACAGAGGCACTCAGTACAA  885

seq1  GGAGTGGTCAAGCTTTGGAGCATGGAGAGATAGCATCCAGGAACCTGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGTCAAGCTTTGGAGCATGGAGAGATAGCATCCAGGAACCTGCCT  935

seq1  GACCTTTTATATTTTATAGGGTCTTTCTGAAACCTGTTGTGGGAAAGATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTTATATTTTATAGGGTCTTTCTGAAACCTGTTGTGGGAAAGATC  985

seq1  TATACTGAGACCATTTTGTGATGAATTATTTTGACAGAAAATCCATTGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGAGACCATTTTGTGATGAATTATTTTGACAGAAAATCCATTGTC  1035

seq1  AGATGGCTGGATTAGAATCACCTCTGGGTAAGTTTGTGGGAATGTATCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTGGATTAGAATCACCTCTGGGTAAGTTTGTGGGAATGTATCCA  1085

seq1  GGTCAACTGAAGCCCCACTCTGAACACAGGTGGCATTGTACCAATAAAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTGAAGCCCCACTCTGAACACAGGTGGCATTGTACCAATAAAAA  1135

seq1  GTGAACTGAGCGACAGCCAGATAAATGCTGGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGAGCGACAGCCAGATAAATGCTGGAATTC  1171