BAC Information

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BAC

Clone NameB6Ng01-222F21
Chromosome13 (Build37)8 (Build37)
Map Location 88,796,069 - 88,797,1604,949,207 - 4,949,255
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F21.bB6Ng01-222F21.g
ACCGA037406GA037407
length1,081982
definitionB6Ng01-222F21.b B6Ng01-222F21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,796,069 - 88,797,160)(4,949,207 - 4,949,255)
sequence
gaattctacacccctaaaccccttaccctataaaaccccctagcttttga
gcctcgtggccgacatccattatctgctgtgtgggatacatgttggtccg
gagctctgtcattaaactacctcatgtaattacatcaagacagaaatgct
ctaaaatggggctatacttgtctttctaactgacctgggggaagtaggca
catcatagcagaaagagaacctttagcttgctcagttttcttaccatttt
caagtcactgcaattgtccatgtggtccaaataaaagggaccaaaaaaaa
aaaaaaaagactttcaaaatctttagtttatagattataagtccaattaa
tttaaagatactctcttttagaatacaggtaattcatgaaaagttcaaaa
gatatcaatattaaaaacgtaagagaattcaggttttgttaatggcattt
ctgtgaagttcgagaaactttgagagccagaatgcagttgaaagaaacag
gctattggatcatgatgaccttgaggctacattttgtcaataggcttccc
ctttcaccttctttctcctttcatttcttcctttcctttctcattctcct
ctttctaacatgattttaaataccttttcatcatcacatctctctctctc
atgttattttttttctctacatgcagaggtacagtctaagaagctaaatg
tccatagactaaatctgagctacaggaaatcttttcttatttaagatgat
ttcataggtattttgtcatggtgacagattcctgacaaatattagcagag
aaaagtcaagtcgagtgttaaagcataaaagatattagaactaagaaact
gtaatcatagaataggagattaaggcaagaggtaagtgaaaaagaagtgt
agtgagatcatttcaaggcaacgagtactatcaatagagacagcaacaat
gataaaactaccaacaaaaaaaacccacatatgttatttaatagacattc
tagactttctagatcacttctgaattatactttatacatcaaaaatgttt
aagtactccagcaaatgaagttattgcttca

gaattctgagtcaaccagaattacaggaaaggcaggctccaatcagatat
actgagggcagcaagcacttgagctaatcatatggcatgaggcaagcata
agaacagaagcaacagaaaccatggtaaattggcatcataagaaccaaac
actcctaccatagcaagtcctggatataccatcacaccagaaaagcaaga
tatggatctaaagtcacttctcatgatgatgatggaggactatagtaagt
aaataaatatctcctttgaagaagtacagaacacgtccaatcaagtgaaa
gaattgaacaaaaccatccaggatctaaaaatagaagtaggagcaataaa
gaaatcacaaagggagactactctggaagtagaaaaactaggcaagaagt
caggagccattgatgcaagcataaccaacagaatacaagtgatagaagag
agaatctgaggtgcagaagataccatagaaaatttgaagcagcaaccaaa
gaaaatgtgaagtgcaaaaagatcctaactcaaaatatccaggaaatcga
ggacccaatgagaagatcaaatcgaagaataaaaggtatagccgagaagg
aagatttccaacttaaaggatcagtaaatatcttcaacaaaattatagaa
gaaaacttacctaacctaaagaaagaaatgaacgtgaacacacaaaaagc
ctacagaactccaaatagactggaccagaaaagaaattcctccctacaca
taataatcagaacaacaaatgcactaaataagaatagaatgttaaaagca
gtaagggaaaaaaggtcaagtaacatataaaggcagacctatcagagtta
cacctgacttctccacagagacaatgaaagccagtagatcctggtcagat
gtcatatacaacctatgagaagacaaatgccagcccatgcgactatacct
agcaaaactctcaattaccatagatgggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88796069_88797160
seq2: B6Ng01-222F21.b_44_1124 (reverse)

seq1  TGAAGCAATAACCTCATTTGCTTGGGAGTACTTTAAACATTTTTTTGATT  50
      |||||||||||| |||||||||  ||||||| |||||||  |||||||| 
seq2  TGAAGCAATAACTTCATTTGCT--GGAGTAC-TTAAACA--TTTTTGAT-  44

seq1  GGTATTAAAGTATAATTTCAGGAAAGTGATCTAGAAAGTCTAGAATGTCT  100
       ||| |||||||||| |||||  |||||||||||||||||||||||||| 
seq2  -GTA-TAAAGTATAA-TTCAG--AAGTGATCTAGAAAGTCTAGAATGTC-  88

seq1  TATTAAATAACATATGTGGGTTTTTTTTGTTGGTAGTTTTATCATTTGTT  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTAAATAACATATGTGGGTTTTTTTTGTTGGTAGTTTTATCA-TTGTT  137

seq1  GCTGTCTCTATTGATAGTACTCGTTGCCTTG-AATGATCTCACTACACTT  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGTCTCTATTGATAGTACTCGTTGCCTTGAAATGATCTCACTACACTT  187

seq1  CTTTTTCACTTACCTCTTGCCTTAATCTCCTATTCTATG-TTACAGTTTC  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTTTCACTTACCTCTTGCCTTAATCTCCTATTCTATGATTACAGTTTC  237

seq1  TTAGTTCTAATATCTTTTATGCTTTAACACTCGACTTGACTTTTCTCTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTAATATCTTTTATGCTTTAACACTCGACTTGACTTTTCTCTGC  287

seq1  TAATATTTGTCAGGAATCTGTCACCATGACAAAATACCTATGAAATCATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGTCAGGAATCTGTCACCATGACAAAATACCTATGAAATCATC  337

seq1  TTAAATAAGAAAAGATTTCCTGTAGCTCAGATTTAGTCTATGGACATTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGAAAAGATTTCCTGTAGCTCAGATTTAGTCTATGGACATTTA  387

seq1  GCTTCTTAGACTGTACCTCTGCATGTAGAGAAAAAAAATAACATGAGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAGACTGTACCTCTGCATGTAGAGAAAAAAAATAACATGAGAGA  437

seq1  GAGAGATGTGATGATGAAAAGGTATTTAAAATCATGTTAGAAAGAGGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTGATGATGAAAAGGTATTTAAAATCATGTTAGAAAGAGGAGA  487

seq1  ATGAGAAAGGAAAGGAAGAAATGAAAGGAGAAAGAAGGTGAAAGGGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAGGAAAGGAAGAAATGAAAGGAGAAAGAAGGTGAAAGGGGAAG  537

seq1  CCTATTGACAAAATGTAGCCTCAAGGTCATCATGATCCAATAGCCTGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGACAAAATGTAGCCTCAAGGTCATCATGATCCAATAGCCTGTTT  587

seq1  CTTTCAACTGCATTCTGGCTCTCAAAGTTTCTCGAACTTCACAGAAATGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACTGCATTCTGGCTCTCAAAGTTTCTCGAACTTCACAGAAATGC  637

seq1  CATTAACAAAACCTGAATTCTCTTACGTTTTTAATATTGATATCTTTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAAAACCTGAATTCTCTTACGTTTTTAATATTGATATCTTTTGA  687

seq1  ACTTTTCATGAATTACCTGTATTCTAAAAGAGAGTATCTTTAAATTAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATGAATTACCTGTATTCTAAAAGAGAGTATCTTTAAATTAATT  737

seq1  GGACTTATAATCTATAAACTAAAGATTTTGAAAGTCTTTTTTTTTTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTATAATCTATAAACTAAAGATTTTGAAAGTCTTTTTTTTTTTTTT  787

seq1  TTGGTCCCTTTTATTTGGACCACATGGACAATTGCAGTGACTTGAAAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCTTTTATTTGGACCACATGGACAATTGCAGTGACTTGAAAATG  837

seq1  GTAAGAAAACTGAGCAAGCTAAAGGTTCTCTTTCTGCTATGATGTGCCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAACTGAGCAAGCTAAAGGTTCTCTTTCTGCTATGATGTGCCTA  887

seq1  CTTCCCCCAGGTCAGTTAGAAAGACAAGTATAGCCCCATTTTAGAGCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAGGTCAGTTAGAAAGACAAGTATAGCCCCATTTTAGAGCATT  937

seq1  TCTGTCTTGATGTAATTACATGAGGTAGTTTAATGACAGAGCTCCGGACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGATGTAATTACATGAGGTAGTTTAATGACAGAGCTCCGGACC  987

seq1  AACATGTATCCCACACAGCAGATAATGGATGTCGGCCACGAGGCTCAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATCCCACACAGCAGATAATGGATGTCGGCCACGAGGCTCAAAA  1037

seq1  GCTAGGGGGTTTTATAGGGTAAGGGGTTTAGGGGTGTAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGGGTTTTATAGGGTAAGGGGTTTAGGGGTGTAGAATTC  1081


seq1: chr8_4949207_4949255
seq2: B6Ng01-222F21.g_688_736 (reverse)

seq1  TTTAGGTTAGAGACGTTTTCTTCTATAATTCTGTTGAAGATATTTACTG  49
      ||||||||||  | |||||||||||||||| ||||||||||||||||||
seq2  TTTAGGTTAGGTAAGTTTTCTTCTATAATTTTGTTGAAGATATTTACTG  49


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