BAC Information

Click to search

BAC

Clone NameB6Ng01-223D20
Chromosome8 (Build37)
Map Location 72,304,802 - 72,305,265
singlet/doubletsinglet
Overlap genenone
Upstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik
Downstream geneAtp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223D20.bB6Ng01-223D20.g
ACCGA038041GA038042
length9831,165
definitionB6Ng01-223D20.b B6Ng01-223D20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgttttgctttgtgccccatttttaattgggttattttgttt
gttggagtctaacttcttttttaaaatatgtttttaaagacttatttatt
ttatgtatatgagtacactgtagctgtacagatggttataagacaggacc
tctactcactctggccctgctcactctggcccaaagatttatttattatt
atacataagtacactgtagctgtcttcagacacaccagaagagggcgtca
gatctcattacagatggttgtgagccaccatgtggttgctgggctttgga
ctcaggacctttggaagggcagtcagtgttcttatccatgttactagcca
gaagtctaacttaagttctttatatttttgtggtattagccctctgtcag
atgtagggttagtgaagatcttttctcaacctgtaggctgccatttttgt
cctattgacagtgtcctttgccttttaggttttcagtttcttgagtttct
aatatcaattgttggcctaagagcctgtgagccactgtttttttttgttt
tttgttttgtttttttttttttttacattgtctcttgtgccagtgccttc
aaaggtatttcccactttctcttctatgagatttagtgtatccagtttta
tgttgaggtccttgatccacctggacttgagttttctatactgtgattaa
tatggatctatttgaattcttctatacacgcagacatcaagttagatcag
catttgttgaagatgctttccttcttcccttgtatagttttggcttcttt
gtcaaaaatcaagtgtccatagatgtgtgggtttattttctgggtcttca
gttctgttccattgatctacctgcctgtctctgtaccaatatcatgtttt
ttttgtctgttgtttgtttgggttttttgttttgtttgtttttatcacct
attgctctgtagtacagcttgagtcagggatgg
tccgcggaattctcatcattctttcttcttcccctttctcccttctcatt
ctttaaccttctcccggccagagagcctgagcccagtcttttatttggta
catcatcaaggctttgaacattgttaattttttttgagaaatccttaaat
ttacagaaattttataaatcctggatcattagtcccaacttctgcttcca
taaaacagaaactataaacaaagcaaaagcacattttcttatcgttttta
cacagcctgttcttcatggatagctgtgcacatctcttgaatttcttggt
acagaagacagcaatttgcaagaatgcaaattgatccattcttatctcct
tgtacaaagctcaagtccaagtggctcaaggacctcaacaacaacaacaa
taacaacaacaaaaaaaaccaaatgcactgaatctaatagaacagaaagt
ggggaaaagcctcaaacacatcagcacaggtggaaatttcctgaacagaa
caccaatggctcaggctctaagatcaactatagacaaatgggatctcata
aaattgaaaaaccttctataagacaaaagacactgtcaataggacaaaat
ggcattgctggtgggattgcaagctgatactatggaaatcagtctggtag
cgcctcagaaaattggacatagtattacctaaggacccagctataccact
cctgggtatcccagaagatgctccaatatataacaaagacatgtgctcca
ctatgtttatagcagcctttatttataatagccagaagttggaaacaacc
caggtgtccctcagtagaggaacggatacagaaaatgtgatacatttgca
caatggagttactactcagctattaaaaacaatgacttcctgaaatttca
gaggcaaatggatggaactagaaaatattatcctgattgaggtaacccag
tcacaaaagaacacatatggtatgcactcactgataatggatattaagca
agagtatggaataccagatacaatcacagacatacgaagctcagaaaaaa
agaagccaagtgtgggtgttttcatcctacctagacggggggaataaata
tcaatgagtagaggaggtaggccggatagatggggttatcaaactctcat
catcgtgcagctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72304802_72305265
seq2: B6Ng01-223D20.b_123_381

seq1  TTTTTAAAGATTTATTTATTTATTTTATGTATATGAGTACATTGTAGCTG  50
      |||||||||    | |||||||||||||||||||||||||| ||||||||
seq2  TTTTTAAAG----ACTTATTTATTTTATGTATATGAGTACACTGTAGCTG  46

seq1  TACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAACTCAGGAC  100
      ||||||||||| |                           ||  ||||||
seq2  TACAGATGGTTAT---------------------------AAGACAGGAC  69

seq1  CTCTGCTCACTCCAGCCCTGCTCACTCTGGCCCAAAGATTTA-TCATTA-  148
      |||| |||||||  |||||||||||||||||||||||||||| | |||| 
seq2  CTCTACTCACTCTGGCCCTGCTCACTCTGGCCCAAAGATTTATTTATTAT  119

seq1  TATATAAAAGTACATTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTC  198
      |||| | ||||||| ||||||||||||||||||||||||||||||| |||
seq2  TATACATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTC  169

seq1  AGATCTCATTATGGATGGTGGTGAGCCACTGTGTAGTTGCTGGGATTTGA  248
      |||||||||||  |||||| |||||||||  ||| ||||||||| |||| 
seq2  AGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGCTTTGG  219

seq1  ACTCAGGATCTTCAGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCT  298
      |||||||| |||  |||| |||||||||| ||||| |||           
seq2  ACTCAGGACCTTTGGAAGGGCAGTCAGTGTTCTTATCCAT----------  259

seq1  TACCAGACCTCTCCAGCTTTTTTTTTTTTAATATGGTACACTGTAACTGT  348
                                                        
seq2  --------------------------------------------------  259

seq1  CTTCAAATACCCTAGAAGAAGGCATCAGATCTCACTACAGATGGTTGTGA  398
                                                        
seq2  --------------------------------------------------  259

seq1  GCCACCATGTGGTTGGTGTGCTTTGAACTCAGGACCTTCAGAAGAGCAAT  448
                                                        
seq2  --------------------------------------------------  259

seq1  CAGTGTTCTTAACCAT  464
                      
seq2  ----------------  259