BAC Information

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BAC

Clone NameB6Ng01-229L11
Chromosome8 (Build37)
Map Location 61,463,365 - 61,656,780
singlet/doubletdoublet
Overlap geneLOC665116
Upstream gene4930431L04Rik, BC030500
Downstream geneLOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229L11.bB6Ng01-229L11.g
ACCGA042772GA042773
length1,1311,115
definitionB6Ng01-229L11.b B6Ng01-229L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,655,642 - 61,656,780)(61,463,365 - 61,464,496)
sequence
gaattcaggcacctcaaaaaattttagaatttcacagtacatattttaat
atactcaaagcaaattacaagtatttaaaaccttctttcttccttcaaac
agaattctaagtctatttcatagatatcagaaaatgaaacaagttttgaa
aagaataatttcaaacatttttcataaaaaataaattcatatattaattg
tatagaatgtgataacatttcacaaatgcatgcttcagtcaaattataga
tcagtggtgatttaaagatattgatgattcaaagccttctttcctcctca
gcaacaggcagcctgtcatcgtcaatcttcatttttgtttcttgatttta
ataaaagtgatggcatgaaacaagagctatgcttgctgtcacattatata
tgtgttatgcatcgcctaattttaagatttatcagtatttttatacttta
ggggatctttcatttctatatagatagcttcctcttgtttatatatctat
caaatttgatatcagagtcaattgacataaatatagtagagtatttaact
ttgggtaattatatgtaaaactgaggacattcatgtagatattgatgcaa
aaattatggaaaccattacaaatcatcctgcattattaattcatatatct
atgaataaattagataaataattgtttaccttgatttattattctatata
tctctattgacttgggtaaaataaactgcctatatttttatttctatacc
atagaatgatgatgaagaatagctcagtcatgttggttgtttgctaattt
gaactgactaacagagaaagatgtataatttactcaaagaaattttaggt
tttaatataggtgaagaaaatcttgatgaaatcaagaaggattctaaatt
ataatgtgcatgtatttgactatatccttaaaacttagaactatcctttc
atattccatgagcttcatcaaattttgtttataaatcagacacatactgt
gatctaaataacactttctacagaataccctaagtgaagttagagaaata
ttttctgtactagagactgctgctctttcagagaaatttgattggatcca
gcagcacttggtagctcacaaaccttttgta

gaattcttcttaattatcatgagaatatatttattgcttatatcattaag
aaaattgcatgttatacattttatatggttaatataacatttagtgctta
ctgccttgattcaaataattttatttgaatccttttatttctaagacatg
tttagtgcatcacaataatattgggcagccaggttcagtacaaataactt
gtccgtgaaggatcatttattttgactttaaaaggagacctcctatgaat
atcaactattctattaattaaatgaattagatcctctgaggtctggagaa
aggccaaaaatagaaagcaatgattatattaatcttatgtttagaatgat
tcataagacaagccatgaatatcaaatatatcatttctacacatctcaaa
ctatatataacagacaggatcaagggcaagcatgagcaactcaaaggatg
agaagctttctggaaatacaatcaagtactgaataacaattttggacaaa
gttcaatattagaggacctgattcttcatagtactttcaaagatgaccac
atatgcatggaagagtacccaactttgtcttccttcttcacctgttccct
caaacataaatcagcacctctgaaacattactcatatttaaagccaaaat
cctttcatattttatcactaaaccattgacattttgtacagtccaagctt
ataattttacctgaccctttcattatgaatttacattcccagtgatttta
taattaatgagcaattacccaaattaacattttaaaagcaatgctagaaa
acacctctggacacagctgactttcaatttgcttcatgcctccattctga
ttcttaggtgaacctagggggtaatgactgaagagtcatacgtcctcact
tctaggacaccagtgttcatttttcaatgacttgtctagaatttatgttt
attgattctaaaacagaatgactgatatctgggtctatatataactcaga
tatttcagaaattttcagacttcaagtttcttattctgctttttgttttg
taaaatgatcttgtgctctattggaaatctgctgcctctctcaattgcat
tccacgctatataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61655642_61656780
seq2: B6Ng01-229L11.b_46_1176 (reverse)

seq1  TACAAAA-GTTTGTGAGCTAACAAATTGCTGCTGGGAATCAAATCAAA-T  48
      ||||||| ||||||||||| || || |||||||||  ||| ||||||| |
seq2  TACAAAAGGTTTGTGAGCT-ACCAAGTGCTGCTGG--ATCCAATCAAATT  47

seq1  TCTCTGAAAGAGCAGCCAGTTCTCTTAGTTACAG-AAATATTTCTCTAAA  97
      ||||||||||||||| ||| |||| ||| ||||| |||||||||||||| 
seq2  TCTCTGAAAGAGCAG-CAG-TCTC-TAG-TACAGAAAATATTTCTCTAA-  92

seq1  CTTTCACCTAGGGTATTCTGTAGAAAGGTGTTATTTAGATCACAGTATGT  147
        ||||| |||||||||||||||||| |||||||||||||||||||||| 
seq2  -CTTCACTTAGGGTATTCTGTAGAAA-GTGTTATTTAGATCACAGTATG-  139

seq1  TGTTTGATTTATAAACAAAATTTGATGAAGCTCATGGAATATGAAAGGAT  197
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATTTATAAACAAAATTTGATGAAGCTCATGGAATATGAAAGGAT  189

seq1  AGTTCTAAGTTTTAAGGATATAGTCAAATACATGCACATTATAATTTAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAGTTTTAAGGATATAGTCAAATACATGCACATTATAATTTAGA  239

seq1  ATCCTTCTTGATTTCATCAAGATTTTCTTCACCTATATTAAAACCTAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTTGATTTCATCAAGATTTTCTTCACCTATATTAAAACCTAAAA  289

seq1  TTTCTTTGAGTAAATTATACATCTTTCTCTGTTAGTCAGTTCAAATTAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGTAAATTATACATCTTTCTCTGTTAGTCAGTTCAAATTAGC  339

seq1  AAACAACCAACATGACTGAGCTATTCTTCATCATCATTCTATGGTATAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCAACATGACTGAGCTATTCTTCATCATCATTCTATGGTATAGA  389

seq1  AATAAAAATATAGGCAGTTTATTTTACCCAAGTCAATAGAGATATATAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATATAGGCAGTTTATTTTACCCAAGTCAATAGAGATATATAGA  439

seq1  ATAATAAATCAAGGTAAACAATTATTTATCTAATTTATTCATAGATATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATCAAGGTAAACAATTATTTATCTAATTTATTCATAGATATAT  489

seq1  GAATTAATAATGCAGGATGATTTGTAATGGTTTCCATAATTTTTGCATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATAATGCAGGATGATTTGTAATGGTTTCCATAATTTTTGCATCA  539

seq1  ATATCTACATGAATGTCCTCAGTTTTACATATAATTACCCAAAGTTAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACATGAATGTCCTCAGTTTTACATATAATTACCCAAAGTTAAAT  589

seq1  ACTCTACTATATTTATGTCAATTGACTCTGATATCAAATTTGATAGATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTATATTTATGTCAATTGACTCTGATATCAAATTTGATAGATAT  639

seq1  ATAAACAAGAGGAAGCTATCTATATAGAAATGAAAGATCCCCTAAAGTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGAGGAAGCTATCTATATAGAAATGAAAGATCCCCTAAAGTAT  689

seq1  AAAAATACTGATAAATCTTAAAATTAGGCGATGCATAACACATATATAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTGATAAATCTTAAAATTAGGCGATGCATAACACATATATAAT  739

seq1  GTGACAGCAAGCATAGCTCTTGTTTCATGCCATCACTTTTATTAAAATCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCAAGCATAGCTCTTGTTTCATGCCATCACTTTTATTAAAATCA  789

seq1  AGAAACAAAAATGAAGATTGACGATGACAGGCTGCCTGTTGCTGAGGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAAATGAAGATTGACGATGACAGGCTGCCTGTTGCTGAGGAGG  839

seq1  AAAGAAGGCTTTGAATCATCAATATCTTTAAATCACCACTGATCTATAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGCTTTGAATCATCAATATCTTTAAATCACCACTGATCTATAAT  889

seq1  TTGACTGAAGCATGCATTTGTGAAATGTTATCACATTCTATACAATTAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGAAGCATGCATTTGTGAAATGTTATCACATTCTATACAATTAAT  939

seq1  ATATGAATTTATTTTTTATGAAAAATGTTTGAAATTATTCTTTTCAAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTTATTTTTTATGAAAAATGTTTGAAATTATTCTTTTCAAAAC  989

seq1  TTGTTTCATTTTCTGATATCTATGAAATAGACTTAGAATTCTGTTTGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTTTCTGATATCTATGAAATAGACTTAGAATTCTGTTTGAAG  1039

seq1  GAAGAAAGAAGGTTTTAAATACTTGTAATTTGCTTTGAGTATATTAAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAGGTTTTAAATACTTGTAATTTGCTTTGAGTATATTAAAAT  1089

seq1  ATGTACTGTGAAATTCTAAAATTTTTTGAGGTGCCTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGTGAAATTCTAAAATTTTTTGAGGTGCCTGAATTC  1131


seq1: chr8_61463365_61464496
seq2: B6Ng01-229L11.g_67_1181

seq1  GAATTCTTCTTAATTATCATGAGAATATATTTATTGCTTATATCATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTAATTATCATGAGAATATATTTATTGCTTATATCATTAAG  50

seq1  AAAATTGCATGTTATACATTTTATATGGTTAATATAACATTTAGTGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCATGTTATACATTTTATATGGTTAATATAACATTTAGTGCTTA  100

seq1  CTGCCTTGATTCAAATAATTTTATTTGAATCCTTTTATTTCTAAGACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGATTCAAATAATTTTATTTGAATCCTTTTATTTCTAAGACATG  150

seq1  TTTAGTGCATCACAATAATATTGGGCAGCCAGGTTCAGTACAAATAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCATCACAATAATATTGGGCAGCCAGGTTCAGTACAAATAACTT  200

seq1  GTCCGTGAAGGATCATTTATTTTGACTTTAAAAGGAGACCTCCTATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTGAAGGATCATTTATTTTGACTTTAAAAGGAGACCTCCTATGAAT  250

seq1  ATCAACTATTCTATTAATTAAATGAATTAGATCCTCTGAGGTCTGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTATTCTATTAATTAAATGAATTAGATCCTCTGAGGTCTGGAGAA  300

seq1  AGGCCAAAAATAGAAAGCAATGATTATATTAATCTTATGTTTAGAATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAATAGAAAGCAATGATTATATTAATCTTATGTTTAGAATGAT  350

seq1  TCATAAGACAAGCCATGAATATCAAATATATCATTTCTACACATCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGACAAGCCATGAATATCAAATATATCATTTCTACACATCTCAAA  400

seq1  CTATATATAACAGACAGGATCAAGGGCAAGCATGAGCAACTCAAAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATAACAGACAGGATCAAGGGCAAGCATGAGCAACTCAAAGGATG  450

seq1  AGAAGCTTTCTGGAAATACAATCAAGTACTGAATAACAATTTTGGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTCTGGAAATACAATCAAGTACTGAATAACAATTTTGGACAAA  500

seq1  GTTCAATATTAGAGGACCTGATTCTTCATAGTACTTTCAAAGATGACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATATTAGAGGACCTGATTCTTCATAGTACTTTCAAAGATGACCAC  550

seq1  ATATGCATGGAAGAGTACCCAACTTTGTCTTCCTTCTTCACCTGTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGGAAGAGTACCCAACTTTGTCTTCCTTCTTCACCTGTTCCCT  600

seq1  CAAACATAAATCAGCACCTCTGAAACATTACTCATATTTAAAGCCAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAAATCAGCACCTCTGAAACATTACTCATATTTAAAGCCAAAAT  650

seq1  CCTTTCATATTTTATCACTAAACCATTGACATTTTGTACAGTCCAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATATTTTATCACTAAACCATTGACATTTTGTACAGTCCAAGCTT  700

seq1  ATAATTTTACCTGACCCTTTCATTATGAATTTACATTCCCAGTGATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTACCTGACCCTTTCATTATGAATTTACATTCCCAGTGATTTTA  750

seq1  TAATTAATGAGCAATTACCCAAATTAACATTTTAAAAGCAATGCTAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATGAGCAATTACCCAAATTAACATTTTAAAAGCAATGCTAGAAA  800

seq1  ACACCTCTGGACACAGCTGACTTTCAATTTGCTTCATGCCTCCATTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTGGACACAGCTGACTTTCAATTTGCTTCATGCCTCCATTCTGA  850

seq1  TTCTTAGGTGAACCTAGGGGGTAATGACTGAAGAGTCATACGTCCTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGTGAACCTAGGGGGTAATGACTGAAGAGTCATACGTCCTCACT  900

seq1  TCTAGGACACCAGTGTTCATTTTTCAATGACTTGTCTAGAATTTAATGTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTAGGACACCAGTGTTCATTTTTCAATGACTTGTCTAGAATTT-ATGTT  949

seq1  TATTGATTCTAAAACAAGAATTGACTGAATATTCTTGGTCTATTATATAA  1000
      ||||||||||||||| |||| |||||| ||| ||| |||||| |||||||
seq2  TATTGATTCTAAAAC-AGAA-TGACTG-ATA-TCTGGGTCTA-TATATAA  994

seq1  CTCAGATATTTTCAGAAATTTTCAGACTTCAAGTTTTCCTTATTTCTGCT  1050
      |||||||| |||||||||||||||||||||||||||  |||| |||||| 
seq2  CTCAGATA-TTTCAGAAATTTTCAGACTTCAAGTTT--CTTA-TTCTGC-  1039

seq1  TTTTTTTTTTTTTTTTGTAAAATGATTCTTTGTGCTCTATTGGAAATCTG  1100
            ||||| ||||||||||||||   |||||||||||||||||||||
seq2  ------TTTTTGTTTTGTAAAATGAT--CTTGTGCTCTATTGGAAATCTG  1081

seq1  CTG-CTCTCTCATATGCATCCCACGCTAT-TACA  1132
      ||| ||||||||  ||||| ||||||||| ||||
seq2  CTGCCTCTCTCAATTGCATTCCACGCTATATACA  1115


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