BAC Information

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BAC

Clone NameB6Ng01-230B20
Chromosome8 (Build37)
Map Location 19,246,768 - 19,247,694
singlet/doubletsinglet
Overlap geneDefb5
Upstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081
Downstream geneDefb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230B20.bB6Ng01-230B20.g
ACCGA043065GA043066
length1,158931
definitionB6Ng01-230B20.b B6Ng01-230B20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatatcaaatggccaagaagcaccaaagaaaggt
tcatcatccttagtcattagggaaatgaaaatcaaaacaactgtgaggat
cgattttacatcaatcagaatgactaaggttaaaatctatggttatagca
gatgctattgaggatgtggaataagaacactcccccattgttggtgagat
tgaaagctgttacaaccactctggaaatgaatctggcagttccttagaaa
gttggatatactattacctggtgacccacctcaatgatacctgggcatat
acccaaaagatgttccaacacataataaggacatatgcttcactatgttc
acagcagccttattcataatagccagaagctttaaagaggccagatgtac
ttcaagagaggaatgggtacagtaattgtggtacatttgcacaatggagt
actactcagctgttaaaaactatgactcatgaaattcttagacaaatgga
tggaaatagaaaatcctgagtgagataacccaatcacaaaagaacacaca
gggtatgtactgactgagaagtggatattagcccaaattctcagaatacc
caagataccacttacagaccacatgaaggttaagaagaaggaaaaccaaa
ctgtggatgcttaagtccttcttagaagggggttcaaaatattcatatga
gaaaatatggagataaagtgtggagcagagactgaaggaaaggccatcca
gagactgccccaccaggggatccatcccatatacaaacaccaaacccaga
cactattgtacatgccaagaagtgcttactgacaggagcctgttatagct
ctcctttgagagtttctgccagaccctgaaaaatacagagacagtttctg
gcaggcactattggactaagcacaggaccacctatggtggagttattgaa
aagattgaagacctgagggtttgcaaccccataagacaaacatcaatatc
acagtgagacacaccctccctgagctctcagagactaaaccacacaaaga
gtacccatagaggacccatgctcagctgcattgttcaagatagtctgcta
tgcatcaatgggattgagctctgtcttgtaggcctcaatggctaggtagg
gccatgca
gaattctcatgatataatccaaaaggtaacttgacacctcacctctgata
catacattgtttcagaaactggagaaccacagacccaaaggctagcaatt
cccaagagctgcccatcacctggtagctagaaccagctacttgctgtttt
cttctaggtaggaatggcgccttgtgttctggtaacctgttactaactca
ttgctttctctgaaagaggaaacagtacactgttcctccctgtccatctt
gccttatgtccatcacattgggtgtatggtgagtttctggaggtttttag
taggaaatgaactccattactgagcagtaacttggagaaatttatgagac
taggctcatgttcttacttggaaaagcttggggaacgtttggtcacatgt
gttacatgcagcagcccaaatgactctaggtgaaatgagtccccactgag
gcctaatcttgttgccagactctgagatgaccaagtcaaatatctgaggt
ataaacaagtaagctccaattgtaaccagtaagtctgtcccaggacagca
tgggtcccgctcacctaagaagtagggcaggaatctgctcatggtcagca
gtgcaggaggaactcctctggggatcctcacatttgcataagagactctg
agtgtgctctcaaagggccaatttgacaagagagataagatgctctgtgt
ttcataattttacgtccttgcatcctagtcagtgtaaaatcctaacgagg
aggtagcacataacactatataaggcactgagctcaaatccctctgcatc
tgtgcccctcaccaggcttcagccatgaagatccattaccttctctttgc
atttctccttggtgctgctgtctccacttgcagttgtgtcaggggagtac
gcggtccccaaagttaaaaagagataagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19246768_19247694
seq2: B6Ng01-230B20.g_71_1001

seq1  GAATTCTCATGATATAATCCAAAAGGTAACTTGACACCTCACCTCTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGATATAATCCAAAAGGTAACTTGACACCTCACCTCTGATA  50

seq1  CATACATTGTTTCAGAAACTGGAGAACCACAGACCCAAAGGCTAGCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTGTTTCAGAAACTGGAGAACCACAGACCCAAAGGCTAGCAATT  100

seq1  CCCAAGAGCTGCCCATCACCTGGTAGCTAGAACCAGCTACTTGCTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCTGCCCATCACCTGGTAGCTAGAACCAGCTACTTGCTGTTTT  150

seq1  CTTCTAGGTAGGAATGGCGCCTTGTGTTCTGGTAACCTGTTACTAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGTAGGAATGGCGCCTTGTGTTCTGGTAACCTGTTACTAACTCA  200

seq1  TTGCTTTCTCTGAAAGAGGAAACAGTACACTGTTCCTCCCTGTCCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTCTGAAAGAGGAAACAGTACACTGTTCCTCCCTGTCCATCTT  250

seq1  GCCTTATGTCCATCACATTGGGTGTATGGTGAGTTTCTGGAGGTTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATGTCCATCACATTGGGTGTATGGTGAGTTTCTGGAGGTTTTTAG  300

seq1  TAGGAAATGAACTCCATTACTGAGCAGTAACTTGGAGAAATTTATGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGAACTCCATTACTGAGCAGTAACTTGGAGAAATTTATGAGAC  350

seq1  TAGGCTCATGTTCTTACTTGGAAAAGCTTGGGGAACGTTTGGTCACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCATGTTCTTACTTGGAAAAGCTTGGGGAACGTTTGGTCACATGT  400

seq1  GTTACATGCAGCAGCCCAAATGACTCTAGGTGAAATGAGTCCCCACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGCAGCAGCCCAAATGACTCTAGGTGAAATGAGTCCCCACTGAG  450

seq1  GCCTAATCTTGTTGCCAGACTCTGAGATGACCAAGTCAAATATCTGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATCTTGTTGCCAGACTCTGAGATGACCAAGTCAAATATCTGAGGT  500

seq1  ATAAACAAGTAAGCTCCAATTGTAACCAGTAAGTCTGTCCCAGGACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTAAGCTCCAATTGTAACCAGTAAGTCTGTCCCAGGACAGCA  550

seq1  TGGGTCCCGCTCACCTAAGAAGTAGGGCAGGAATCTGCTCATGGTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCGCTCACCTAAGAAGTAGGGCAGGAATCTGCTCATGGTCAGCA  600

seq1  GTGCAGGAGGAACTCCTCTGGGGATCCTCACATTTGCATAAGAGACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAGGAACTCCTCTGGGGATCCTCACATTTGCATAAGAGACTCTG  650

seq1  AGTGTGCTCTCAAAGGGCCAATTTGACAAGAGAGATAAGATGCTCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCTCAAAGGGCCAATTTGACAAGAGAGATAAGATGCTCTGTGT  700

seq1  TTCATAATTTTACGTCCTTGCATCCTAGTCAGTGTAAAATCCTAACGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTTTACGTCCTTGCATCCTAGTCAGTGTAAAATCCTAACGAGG  750

seq1  AGGTAGCACATAACACTATATAAGGCACTGAGCTCAAATCCCTCTGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCACATAACACTATATAAGGCACTGAGCTCAAATCCCTCTGCATC  800

seq1  TGTGCCCCTCACCAGGCTTCAGCCATGAAGATCCATTACCTTCTCTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCTCACCAGGCTTCAGCCATGAAGATCCATTACCTTCTCTTTGC  850

seq1  ATTTCTCC-TGGTGCTGCTGTCTCCACTTGCAGGTGTGTCAGGGGAGTAC  899
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTCTCCTTGGTGCTGCTGTCTCCACTTGCAGTTGTGTCAGGGGAGTAC  900

seq1  GCGGT-CCCAAAG-TAAAAAGAGAT-AGCTC  927
      ||||| ||||||| ||||||||||| |||||
seq2  GCGGTCCCCAAAGTTAAAAAGAGATAAGCTC  931