BAC Information

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BAC

Clone NameB6Ng01-230N06
Chromosome8 (Build37)
Map Location 127,295,384 - 127,454,109
singlet/doubletdoublet
Overlap geneTrim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1
Upstream geneRab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444
Downstream geneTsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230N06.bB6Ng01-230N06.g
ACCGA043590GA043591
length902895
definitionB6Ng01-230N06.b B6Ng01-230N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,453,210 - 127,454,109)(127,295,384 - 127,296,271)
sequence
ttgctgagcggctgcaaagagaagtgagaactggcccatgtggccatggg
ggtttcgttcatccttgcctacgacagcatggccgtttcattgatcctca
cccgtgtggccatgggcgcttttcatttaccacagcacaaaatagaaggc
agcccaagtgtctaccatctgcaagtagataagctgaggcagggggatga
catctcagtaaaaggacgccttgtccttgataaagcagcgtggtactcct
tgtgcagctaagagaggccacactgctggggcccctgctgagatctggtg
ctgtcacggtagttcagcacgtgtgcatgtttgcatgcccatgcacgagg
acctcagggctcaacctcaggtgtcgtggtcaccctccatcactttctga
gatggagtctcccgttggcctggagctcactggttttgctggagtagcta
gtcagtaggcgtcagggctatacctgtctttgcctctttggtgttgggat
ggcgggctgacagccaggctttctcgtgggtgctggggacccaaaatcag
atctggcatttacccttgtgcagcgagcattttctccctggctcctttct
gaaatctttatttttttttttttatttttatttttttttggtttttcgag
acagagtttctcagtgtagccctggctgtcctggaactcactttgtagac
caggctggcctcgaactcagaaaattcacctgcctctgcctcccgagtgc
tgggactaaaagcggacgccaccacacccgggcctgaaatcactttttta
gcaagtcccattgaaatgttatttgagccaagacggggcaaatttctcaa
ggaaatatctatcagtcactgatgaagttcgcttcgtgtggatgtggttg
tt
gaattcaggttcttacacttgtctaggaagcactttaccaagtacattca
gagtgggcctctcagtgctctcttcaggcctcatccgatgcctgtgacag
cctgttcccactgaacagaaggaagactgcccagctggtggtcctctgct
gctcaaatggactttgttctcaactctcaaaggcattcttcatattataa
agggctaaggtcaaaagaaagttcaaacgttcctcaagttggggttggaa
ttctacctcccccatcaaatcccttgctgaggtcatcggccttttcctca
gcatgagatggcgttgggagaaggggtctcccaagaggttatcaagatgt
acaccaagggagcgtcatccagtaggcctaaagtccttctgtgaagagga
acttggacgttacagagcaaaggccccgcgcaaacagtgagggagcatcc
taccaccaagccttgccatggaaacatacctcctagctgtctgccaaggt
gtctccagaaaagcttgctggggaaggtgtactctggatgtaggcaacac
catgacttggtccatttattctgtttctttttttttttttaagatttatt
tattatatgtaagtacactgtagctgtcttcagacacaccagaaaagggc
atccaaccacattacagatggttgtgagccacccatgtggttttctggat
ttgaactcgggaccgctggaaagagcagtcagagctcttaaccactgggg
ctcatctctccagcccagaccattttattctcaatgaataaaagggagac
agtgagctgagcatcagctttcattctccctctgcttcctgactaagata
cactggtaaccagctgtctcctgcctccctaccatgatggattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127453210_127454109
seq2: B6Ng01-230N06.b_56_957 (reverse)

seq1  AACAACCACATCCACACG-AGCGAACTCCCTCAGTGACTGATAGATATTT  49
      |||||||||||||||||| |||||||| | |||||||||||||||||  |
seq2  AACAACCACATCCACACGAAGCGAACTTCATCAGTGACTGATAGATA--T  48

seq1  TTCCTTGAG-AATTTG-CCCGTCTTGGCTCAAATAACATTTCAATGGGAC  97
      ||||||||| |||||| |||||||||||||||||||||||||||||||| 
seq2  TTCCTTGAGAAATTTGCCCCGTCTTGGCTCAAATAACATTTCAATGGGA-  97

seq1  CTTGCTAAAAAAGTGATTTCAGG-CCGGGTGTGGTGGCGTCCGCTTTTAG  146
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGCTAAAAAAGTGATTTCAGGCCCGGGTGTGGTGGCGTCCGCTTTTAG  147

seq1  TCCCAGCACTCGGGAGGCAGAGGCAGGTGAA-TTTCTGAGTTCGAGGCCA  195
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTTCTGAGTTCGAGGCCA  197

seq1  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACTGAGAAAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACTGAGAAAC  247

seq1  TCTGTCTCGAAAAACCAAAAAAAAATAAAAATAAAAAAAAAAAAATAAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCGAAAAACCAAAAAAAAATAAAAATAAAAAAAAAAAAATAAAG  297

seq1  ATTTCAGAAAGGAGCCAGGGAGAAAATGCTCGCTGCACAAGGGTAAATGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAAAGGAGCCAGGGAGAAAATGCTCGCTGCACAAGGGTAAATGC  347

seq1  CAGATCTGATTTTGGGTCCCCAGCACCCACGAGAAAGCCTGGCTGTCAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGATTTTGGGTCCCCAGCACCCACGAGAAAGCCTGGCTGTCAGC  397

seq1  CCGCCATCCCAACACCAAAGAGGCAAAGACAGGTATAGCCCTGACGCCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATCCCAACACCAAAGAGGCAAAGACAGGTATAGCCCTGACGCCTA  447

seq1  CTGACTAGCTACTCCAGCAAAACCAGTGAGCTCCAGGCCAACGGGAGACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGCTACTCCAGCAAAACCAGTGAGCTCCAGGCCAACGGGAGACT  497

seq1  CCATCTCAGAAAGTGATGGAGGGTGACCACGACACCTGAGGTTGAGCCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAGAAAGTGATGGAGGGTGACCACGACACCTGAGGTTGAGCCCT  547

seq1  GAGGTCCTCGTGCATGGGCATGCAAACATGCACACGTGCTGAACTACCGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTCGTGCATGGGCATGCAAACATGCACACGTGCTGAACTACCGT  597

seq1  GACAGCACCAGATCTCAGCAGGGGCCCCAGCAGTGTGGCCTCTCTTAGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACCAGATCTCAGCAGGGGCCCCAGCAGTGTGGCCTCTCTTAGCT  647

seq1  GCACAAGGAGTACCACGCTGCTTTATCAAGGACAAGGCGTCCTTTTACTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGAGTACCACGCTGCTTTATCAAGGACAAGGCGTCCTTTTACTG  697

seq1  AGATGTCATCCCCCTGCCTCAGCTTATCTACTTGCAGATGGTAGACACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCATCCCCCTGCCTCAGCTTATCTACTTGCAGATGGTAGACACTT  747

seq1  GGGCTGCCTTCTATTTTGTGCTGTGGTAAATGAAAAGCGCCCATGGCCAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCTTCTATTTTGTGCTGTGGTAAATGAAAAGCGCCCATGGCCAC  797

seq1  ACGGGTGAGGATCAATGAAACGGCCATGCTGTCGTAGGCAAGGATGAACG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGAGGATCAATGAAACGGCCATGCTGTCGTAGGCAAGGATGAACG  847

seq1  AAACCCCCATGGCCACATGGGCCAGTTCTCACTTCTCTTTGCAGCCGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCATGGCCACATGGGCCAGTTCTCACTTCTCTTTGCAGCCGCTC  897

seq1  AGCAA  900
      |||||
seq2  AGCAA  902

seq1: chr8_127295384_127296271
seq2: B6Ng01-230N06.g_72_965

seq1  GAATTCAGGTTCTTACACTTGTCTAGGAAGCACTTTACCAAGTACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTTACACTTGTCTAGGAAGCACTTTACCAAGTACATTCA  50

seq1  GAGTGGGCCTCTCAGTGCTCTCTTCAGGCCTCATCCGATGCCTGTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCCTCTCAGTGCTCTCTTCAGGCCTCATCCGATGCCTGTGACAG  100

seq1  CCTGTTCCCACTGAACAGAAGGAAGACTGCCCAGCTGGTGGTCCTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCCACTGAACAGAAGGAAGACTGCCCAGCTGGTGGTCCTCTGCT  150

seq1  GCTCAAATGGACTTTGTTCTCAACTCTCAAAGGCATTCTTCATATTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATGGACTTTGTTCTCAACTCTCAAAGGCATTCTTCATATTATAA  200

seq1  AGGGCTAAGGTCAAAAGAAAGTTCAAACGTTCCTCAAGTTGGGGTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAGGTCAAAAGAAAGTTCAAACGTTCCTCAAGTTGGGGTTGGAA  250

seq1  TTCTACCTCCCCCATCAAATCCCTTGCTGAGGTCATCGGCCTTTTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCCCCCATCAAATCCCTTGCTGAGGTCATCGGCCTTTTCCTCA  300

seq1  GCATGAGATGGCGTTGGGAGAAGGGGTCTCCCAAGAGGTTATCAAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGATGGCGTTGGGAGAAGGGGTCTCCCAAGAGGTTATCAAGATGT  350

seq1  ACACCAAGGGAGCGTCATCCAGTAGGCCTAAAGTCCTTCTGTGAAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGGGAGCGTCATCCAGTAGGCCTAAAGTCCTTCTGTGAAGAGGA  400

seq1  ACTTGGACGTTACAGAGCAAAGGCCCCGCGCAAACAGTGAGGGAGCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGACGTTACAGAGCAAAGGCCCCGCGCAAACAGTGAGGGAGCATCC  450

seq1  TACCACCAAGCCTTGCCATGGAAACATACCTCCTAGCTGTCTGCCAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCAAGCCTTGCCATGGAAACATACCTCCTAGCTGTCTGCCAAGGT  500

seq1  GTCTCCAGAAAAGCTTGCTGGGGAAGGTGTACTCTGGATGTAGGCAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAAAAGCTTGCTGGGGAAGGTGTACTCTGGATGTAGGCAACAC  550

seq1  CATGACTTGGTCCATTTATTCTGTTTCTTTTTTTTTTTTTAAGATTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTGGTCCATTTATTCTGTTTCTTTTTTTTTTTTTAAGATTTATT  600

seq1  TATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAAAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAAAGGGC  650

seq1  ATCCAACCACATTACAGATGGTTGTGAGCCA-CCATGTGG-TTTCTGGAT  698
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  ATCCAACCACATTACAGATGGTTGTGAGCCACCCATGTGGTTTTCTGGAT  700

seq1  TTGAACTCGGGACCGCTGG-AAGAGCAGTCAGAGCTCTTAACCACT-GGG  746
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  TTGAACTCGGGACCGCTGGAAAGAGCAGTCAGAGCTCTTAACCACTGGGG  750

seq1  CTCATCTCTCCAGCCCAGACCA-TTTATTCTCAATGAATAAAAGGGAGAC  795
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCATCTCTCCAGCCCAGACCATTTTATTCTCAATGAATAAAAGGGAGAC  800

seq1  AGTGAGCTGAGCATCAGCTTTCA-TCTCCCTCTGCTTCCTGACTAAAGAT  844
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  AGTGAGCTGAGCATCAGCTTTCATTCTCCCTCTGCTTCCTGACT-AAGAT  849

seq1  ACACT-GTAACCAGCTGTCTCCTGCCTCCCTACCATGATGGATTG  888
      ||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTAACCAGCTGTCTCCTGCCTCCCTACCATGATGGATTG  894