BAC Information

Click to search

BAC

Clone NameB6Ng01-232P11
Chromosome8 (Build37)
Map Location 122,621,604 - 122,803,082
singlet/doubletdoublet
Overlap geneZdhhc7, 6430548M08Rik, 1700120B06Rik
Upstream geneCdh13, Hsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2
Downstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232P11.bB6Ng01-232P11.g
ACCGA045166GA045167
length8951,132
definitionB6Ng01-232P11.b B6Ng01-232P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,802,190 - 122,803,082)(122,621,604 - 122,622,740)
sequence
gaattctctgtcttccatgcattgtggggctcccagagtgggttcccaag
aggcagcgtgtggcgtgttctccacatacacatacagccaccacagccac
cacagccaccaaaggcttggagaagtcagctgcaggggcaaagaaatagt
tgtatcatttaagtatttactacgccaacatgaggacccaagttcaatct
ctagactccagtaagtggccgggagcagtagcttatgcttgtaatttcat
cgctgaggaggaagagacaaacggatccctggggcttgctggccagccag
cctagtctcatctgtggaccccagctcctagtgaggtgctgcctcataaa
aacatggtggatggtgcctgaagaccagcactcaaatatgaccacctctg
gcctctatgtgcacacgcgcacacatgcacatatacagagagagagagag
agagagagagagagagagagagagagagcgccagctggtaatcagcaccc
ttggaggatcagagaagatgaccacgagaggtatcggcctgaagaagaga
ggaggggaagggactagtggtcaccagtggggcagatgacgtcagctggg
agcccatgtttgccctgctttcaggtccagcctgacccatacttggctac
cagggacaatagaccatcgctgaggcctccctgccccaagccagccacat
ccctatggctccctccataggacaaaggaaaataggtacagctggggaca
gaatggggcagaaggtccaggacaggggtatacgggctctccttactctg
ctatgtcccctcatggagcatgacttaggctgatactccccacccccaaa
ttcggagactcggcgttgtgggacggcgtgtggaggtgtgggtgt
gaattcattcaccaatttttaggcacccactatcttcaagactgattgga
tacagaatgttttaaatgatcaggtgctgtgccaataagacacagtacac
agtctggatttcattcaagaagtagcagaattctacgaaatgtgtacaag
aaaggaactcagcagtaagcagggctcagagcagcaagacaagaaaggtt
tgcagtgtggagatcgaagaagccagatgaagacctactgtgctgctcag
gccagcctcaaacttctgggcccaagcgattctgttttatcctctggagt
caggactacagacatagactaccacggtctacctgcatcagaggctttta
gactgaaggggactggaactgacacagctctctcactgtcttcgttagct
tcccattgctgtgaacagataccatgaccaaggcagctcttagaaggaca
acatttaactggggctggcttacaggttcagagggtcagtctattatcaa
ggcgggagcatggcagcacccaggcaggcatggtgcgggaggagctgagg
gttcatcttgttcagaaggcaaacgggagactagctcctatatgactagg
agaaagatctcaaaacctaccccacagtgacacccttcattcaacgaagc
cacatctcctagtagtgccactccctggaccaagcatatacaaaccacca
cattcactgatctttatgtcctccacaacttagaggggacagtgattagt
caatggcaaagcaaagactttccatctttcaagcaggaagagttgaaaag
actaacagtgcatgagctgggaggctctgcatcacagaatccacctgcat
ggaaagaaaggcctcctactgcactgctaaccaatcacaccttctgcatc
agaggatgcctgagctggcaatactccaatacacactgtcacacagcaat
gttaggatggcagaagctgggtatttgagatgtccctgacttccgttctt
ccctgggccaaatttaatgcaagccctttttttgtataaaccaacctact
gcatccctttcagtgggcttcttgaatcatctgtgacatgacagctgtgc
ttaccacccatttgcaggttggacagtgaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_122802190_122803082
seq2: B6Ng01-232P11.b_49_943 (reverse)

seq1  ACACCCAC-CCTCCACACGCCGT-CCAC-ACGCCGATGTCTCCGAATTTG  47
      |||||||| |||||||||||||| |||| ||||||| |||||||||||||
seq2  ACACCCACACCTCCACACGCCGTCCCACAACGCCGA-GTCTCCGAATTTG  49

seq1  GGGGTTGGGGGAGTATCAGCCTTAGTCATGCTCCATGAGGGGACATAGCA  97
      |||||  ||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGGT--GGGGAGTATCAGCCTAAGTCATGCTCCATGAGGGGACATAGCA  97

seq1  GAGTAAGGAGAGCCCGTATACCCCTGTCCTGGACCTTCTGCCCCATTCTG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGAGAGCCCGTATACCCCTGTCCTGGACCTTCTGCCCCATTCTG  147

seq1  TCCCCAGCTGTACCTATTTTCCTTTGTCCTATGGA-GGAGCCATAGGGAT  196
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCCCAGCTGTACCTATTTTCCTTTGTCCTATGGAGGGAGCCATAGGGAT  197

seq1  GTGGCTGGCTTGGGGCAGGGAGGCCTCAGCGATGGTCTATTGTCCCTGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGCTTGGGGCAGGGAGGCCTCAGCGATGGTCTATTGTCCCTGGT  247

seq1  AGCCAAGTATGGGTCAGGCTGGACCTG-AAGCAGGGCAAACATGGGCTCC  295
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCAAGTATGGGTCAGGCTGGACCTGAAAGCAGGGCAAACATGGGCTCC  297

seq1  CAGCTGACGTCATCTGCCCCACTGGTGACCACTAGTCCCTTCCCCTCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACGTCATCTGCCCCACTGGTGACCACTAGTCCCTTCCCCTCCTC  347

seq1  TCTTCTTCAGGCCGATACCTCTCGTGGTCATCTTCTCTGATCCTCCAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCAGGCCGATACCTCTCGTGGTCATCTTCTCTGATCCTCCAAGG  397

seq1  GTGCTGATTACCAGCTGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATTACCAGCTGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  447

seq1  CTCTCTCTCTCTGTATATGTGCATGTGTGCGCGTGTGCACATAGAGGCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTGTATATGTGCATGTGTGCGCGTGTGCACATAGAGGCCA  497

seq1  GAGGTGGTCATATTTGAGTGCTGGTCTTCAGGCACCATCCACCATGTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTCATATTTGAGTGCTGGTCTTCAGGCACCATCCACCATGTTTT  547

seq1  TATGAGGCAGCACCTCACTAGGAGCTGGGGTCCACAGATGAGACTAGGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGCAGCACCTCACTAGGAGCTGGGGTCCACAGATGAGACTAGGCT  597

seq1  GGCTGGCCAGCAAGCCCCAGGGATCCGTTTGTCTCTTCCTCCTCAGCGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCAGCAAGCCCCAGGGATCCGTTTGTCTCTTCCTCCTCAGCGAT  647

seq1  GAAATTACAAGCATAAGCTACTGCTCCCGGCCACTTACTGGAGTCTAGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACAAGCATAAGCTACTGCTCCCGGCCACTTACTGGAGTCTAGAG  697

seq1  ATTGAACTTGGGTCCTCATGTTGGCGTAGTAAATACTTAAATGATACAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTTGGGTCCTCATGTTGGCGTAGTAAATACTTAAATGATACAAC  747

seq1  TATTTCTTTGCCCCTGCAGCTGACTTCTCCAAGCCTTTGGTGGCTGTGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTGCCCCTGCAGCTGACTTCTCCAAGCCTTTGGTGGCTGTGGT  797

seq1  GGCTGTGGTGGCTGTATGTGTATGTGGAGAACACGCCACACGCTGCCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGTGGCTGTATGTGTATGTGGAGAACACGCCACACGCTGCCTCT  847

seq1  TGGGAACCCACTCTGGGAGCCCCACAATGCATGGAAGACAGAGAATTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCCACTCTGGGAGCCCCACAATGCATGGAAGACAGAGAATTC  895

seq1: chr8_122621604_122622740
seq2: B6Ng01-232P11.g_69_1200

seq1  GAATTCATTCACCAATTTTTAGGCACCCACTATCTTCAAGACTGATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACCAATTTTTAGGCACCCACTATCTTCAAGACTGATTGGA  50

seq1  TACAGAATGTTTTAAATGATCAGGTGCTGTGCCAATAAGACACAGTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATGTTTTAAATGATCAGGTGCTGTGCCAATAAGACACAGTACAC  100

seq1  AGTCTGGATTTCATTCAAGAAGTAGCAGAATTCTACGAAATGTGTACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGATTTCATTCAAGAAGTAGCAGAATTCTACGAAATGTGTACAAG  150

seq1  AAAGGAACTCAGCAGTAAGCAGGGCTCAGAGCAGCAAGACAAGAAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACTCAGCAGTAAGCAGGGCTCAGAGCAGCAAGACAAGAAAGGTT  200

seq1  TGCAGTGTGGAGATCGAAGAAGCCAGATGAAGACCTACTGTGCTGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGGAGATCGAAGAAGCCAGATGAAGACCTACTGTGCTGCTCAG  250

seq1  GCCAGCCTCAAACTTCTGGGCCCAAGCGATTCTGTTTTATCCTCTGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTCAAACTTCTGGGCCCAAGCGATTCTGTTTTATCCTCTGGAGT  300

seq1  CAGGACTACAGACATAGACTACCACGGTCTACCTGCATCAGAGGCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTACAGACATAGACTACCACGGTCTACCTGCATCAGAGGCTTTTA  350

seq1  GACTGAAGGGGACTGGAACTGACACAGCTCTCTCACTGTCTTCGTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGGGACTGGAACTGACACAGCTCTCTCACTGTCTTCGTTAGCT  400

seq1  TCCCATTGCTGTGAACAGATACCATGACCAAGGCAGCTCTTAGAAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGCTGTGAACAGATACCATGACCAAGGCAGCTCTTAGAAGGACA  450

seq1  ACATTTAACTGGGGCTGGCTTACAGGTTCAGAGGGTCAGTCTATTATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACTGGGGCTGGCTTACAGGTTCAGAGGGTCAGTCTATTATCAA  500

seq1  GGCGGGAGCATGGCAGCACCCAGGCAGGCATGGTGCGGGAGGAGCTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGAGCATGGCAGCACCCAGGCAGGCATGGTGCGGGAGGAGCTGAGG  550

seq1  GTTCATCTTGTTCAGAAGGCAAACGGGAGACTAGCTCCTATATGACTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTTGTTCAGAAGGCAAACGGGAGACTAGCTCCTATATGACTAGG  600

seq1  AGAAAGATCTCAAAACCTACCCCACAGTGACACCCTTCATTCAACGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATCTCAAAACCTACCCCACAGTGACACCCTTCATTCAACGAAGC  650

seq1  CACATCTCCTAGTAGTGCCACTCCCTGGACCAAGCATATACAAACCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCCTAGTAGTGCCACTCCCTGGACCAAGCATATACAAACCACCA  700

seq1  CATTCACTGATCTTTATGTCCTCCACAACTTAGAGGGGACAGTGATTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTGATCTTTATGTCCTCCACAACTTAGAGGGGACAGTGATTAGT  750

seq1  CAATGGCAAAGCAAAGAC-TTCCATC-TTCAAGCAGGAAGAGTTGAAAAG  798
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  CAATGGCAAAGCAAAGACTTTCCATCTTTCAAGCAGGAAGAGTTGAAAAG  800

seq1  ACTAACAGTGCATGAGCTGGGAGGCTCTGCATCACAGAATCCACCTGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGTGCATGAGCTGGGAGGCTCTGCATCACAGAATCCACCTGCAT  850

seq1  GG-AAGAAAGGCCTCCTACTGCACTGCTAACCAATCACACC-TCTGCATC  896
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAAGAAAGGCCTCCTACTGCACTGCTAACCAATCACACCTTCTGCATC  900

seq1  AGAGGATGCCTGAGCTGGCAATACTCC-ATACACACTGTCACACAGCAAT  945
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGGATGCCTGAGCTGGCAATACTCCAATACACACTGTCACACAGCAAT  950

seq1  GTTAGGATGGCAGAAGCT-GGTATTTGAGATGTCCCTGACTTCCGTTCTC  994
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GTTAGGATGGCAGAAGCTGGGTATTTGAGATGTCCCTGACTTCCGTTCTT  1000

seq1  CCCT-GGCCAAATTTAATTGCAG-CCTTTTTTTGTAATAAACCAACTAAC  1042
      |||| |||||||||||||   || ||||||||||| ||||||||||  ||
seq2  CCCTGGGCCAAATTTAATGCAAGCCCTTTTTTTGT-ATAAACCAACCTAC  1049

seq1  TGCCATCCCTTTCAGTGGGCT--CTGAATCCTTCCTGTGAACCATGACCA  1090
      || ||||||||||||||||||   |||||| |  ||||||  ||||||  
seq2  TG-CATCCCTTTCAGTGGGCTTCTTGAATCAT--CTGTGA--CATGAC--  1092

seq1  AGCTGGTGGCTTTACCCCACCCCAATTTGCAGTGTGGACAGTGAGGT  1137
      |||||   ||||    ||||||  ||||||||  |||||||||||||
seq2  AGCTG--TGCTT---ACCACCC--ATTTGCAGGTTGGACAGTGAGGT  1132