BAC Information

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BAC

Clone NameB6Ng01-234C14
Chromosome13 (Build37)8 (Build37)
Map Location 62,243,292 - 62,244,40941,582,157 - 41,582,335
singlet/doubletsingletsinglet
Overlap geneEG630579
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444
Downstream geneEG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234C14.bB6Ng01-234C14.g
ACCGA046002GA046003
length1,117939
definitionB6Ng01-234C14.b B6Ng01-234C14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,243,292 - 62,244,409)(41,582,157 - 41,582,335)
sequence
gaattctccaacatttcccaatcaataatattttcaattttttcccaatt
gttttgcttatttgtctttattaatagtagtatcttctgtagctcagact
tgacttaccctgtataatagagaattactttggaaactcaatcttgacgc
tgccacccagttcctgaacgatagacctgaaacacattccaggatgtgcc
atgactggtcggtcaatgaaaaggaaaaaagaccatgcgtgagtgttttc
tgaggtctctgtccttttgggggtaattacaaaaaaagaggaaccttctt
aagaatttacttcattgacttgtatggaagggtggatctggggagaaatg
tcctgtcttagttattgatcagtaaacctccagtaggggaggtgctaagg
tcatgaggctcaggtaggtggtgcaagctaatgagggacaccagtgggag
atagcattcaggttcttctaggattctcctcagccacatgccttggagct
ctgaggaagagaccacaatcctaccatggagaaggtaaggacaactgacc
ccagaccaggaagagcatgttggtacagctatcagagtcccatctgctgg
aactaggatggactctgagccacacatttctgttcatacatgtgttgatc
tgggtagaggcacatggctttcttttctccttgagagtgaattccttggg
gaggggaggctctgcagttgtcaccattggatgttgtggtgctgatacca
tcactgtgcagtgtgcacacagaggcttttggtgtgtagttcgaggacag
gtagggaaacttgaggtctggtttgtagaagttctaaatgttctattcca
cacttcagtttcatgggatacattttacaaatagtttgggaactggtaga
atggaggtgctgatcatctgtgagccttacttcattagaatgctttttta
ctttctactcctaccagtcccaatggcatgattcagccaagttcagctcc
atggtacaaagagagtttctgtgatacagaggtgtttgaatgtgttcatc
atgttgagctgtcataaggtagattctgcattttggtcataagtcatgtg
aaggagcagaacattaa
gaattctttcacagcatgtttatagtttgtataaagaaagactatttatt
tatttatttatttatttatttagggtttttcgagacagagtttctctgtg
tagccctagctgtcctggaactcactctgtagaccaggctggcctcggac
tcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgc
gccaccactacccggcttgattttttttttgagttaatttgtttccattc
acttttgtaaagatgtttatcagctgtggggattctctagaagaatttta
ggtgtcagatatttatgtcattatatcatctgggaggaatggtatgtgac
ttcttccttcccgatttgtatctcattctcccttgttgtcttatagtgct
agtgagtacttcaagtactatattgcaaaggtacaaagtagagatctttt
cttatccctgatttcggtggcatttctttaagtttctcaccacttaagtt
gatattggctattggcttgctggatattgactttatggtgtttaggtatg
gactctatatcccaaaaccccgtgagagttgtggtataaagtggtttggt
tttttttcaaagacttttcaagcctctgaccatatgatcatgtgatttgt
tatctacgagtttgtttatatggtgggttatgttgatggattttcatata
ttgaaccatcactgcatcctaggaatgaagcctacatgatcatagtgaat
gatgttttcttgtgttcttgtggtcggttttttggggttgttgtgatttc
atttaatttaaattctagaaaagtatttaattttctttctttctttttct
ttccctgaccagtgatcagagcacaaagcaatatttaaatttgggtgact
ttgtaggctatcctacaaaattctgttcatgtagaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62243292_62244409
seq2: B6Ng01-234C14.b_45_1161

seq1  GAATTCTCCAACATTTCCCAATCAATAATATTTTCAATTTTTTCCCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAACATTTCCCAATCAATAATATTTTCAATTTTTTCCCAATT  50

seq1  GTTTTGCTTATTTGTCTTTATTAATAGTAGTATCTTCTGTAGCTCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTATTTGTCTTTATTAATAGTAGTATCTTCTGTAGCTCAGACT  100

seq1  TGACTTACCCTGTATAATAGAGAATTACTTTGGAAACTCAATCTTGACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACCCTGTATAATAGAGAATTACTTTGGAAACTCAATCTTGACGC  150

seq1  TGCCACCCAGTTCCTGAACGATAGACCTGAAACACATTCCAGGATGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCAGTTCCTGAACGATAGACCTGAAACACATTCCAGGATGTGCC  200

seq1  ATGACTGGTCGGTCAATGAAAAGGAAAAAAGACCATGCGTGAGTGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGTCGGTCAATGAAAAGGAAAAAAGACCATGCGTGAGTGTTTTC  250

seq1  TGAGGTCTCTGTCCTTTTGGGGGTAATTACAAAAAAAGAGGAACCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTCTGTCCTTTTGGGGGTAATTACAAAAAAAGAGGAACCTTCTT  300

seq1  AAGAATTTACTTCATTGACTTGTATGGAAGGGTGGATCTGGGGAGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTACTTCATTGACTTGTATGGAAGGGTGGATCTGGGGAGAAATG  350

seq1  TCCTGTCTTAGTTATTGATCAGTAAACCTCCAGTAGGGGAGGTGCTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTAGTTATTGATCAGTAAACCTCCAGTAGGGGAGGTGCTAAGG  400

seq1  TCATGAGGCTCAGGTAGGTGGTGCAAGCTAATGAGGGACACCAGTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGCTCAGGTAGGTGGTGCAAGCTAATGAGGGACACCAGTGGGAG  450

seq1  ATAGCATTCAGGTTCTTCTAGGATTCTCCTCAGCCACATGCCTTGGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTCAGGTTCTTCTAGGATTCTCCTCAGCCACATGCCTTGGAGCT  500

seq1  CTGAGGAAGAGACCACAATCCTACCATGGAGAAGGTAAGGACAACTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAGAGACCACAATCCTACCATGGAGAAGGTAAGGACAACTGACC  550

seq1  CCAGACCAGGAAGAGCATGTTGGTACAGCTATCAGAGTCCCATCTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGGAAGAGCATGTTGGTACAGCTATCAGAGTCCCATCTGCTGG  600

seq1  AACTAGGATGGACTCTGAGCCACACATTTCTGTTCATACATGTGTTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGATGGACTCTGAGCCACACATTTCTGTTCATACATGTGTTGATC  650

seq1  TGGGTAGAGGCACATGGCTTTCTTTTCTCCTTGAGAGTGAATTCCTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGGCACATGGCTTTCTTTTCTCCTTGAGAGTGAATTCCTTGGG  700

seq1  GAGGGGAGGCTCTGCAGTTGTCACCATTGGATGTTGTGGTGCTGATACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGCTCTGCAGTTGTCACCATTGGATGTTGTGGTGCTGATACCA  750

seq1  TCACTGTGCAGTGTGCACACAGAGGCTTTTGGTGTGTAGTTCGAGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGCAGTGTGCACACAGAGGCTTTTGGTGTGTAGTTCGAGGACAG  800

seq1  GTAGGGAAACTTGAGGTCTGGTTTGTAGAAGTTCTAAATGTTCTATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAAACTTGAGGTCTGGTTTGTAGAAGTTCTAAATGTTCTATTCCA  850

seq1  CACTTCAGTTTCATGGGATACATTTTACAAATAGTTTGGGAACTGGTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGTTTCATGGGATACATTTTACAAATAGTTTGGGAACTGGTAGA  900

seq1  ATGGAGGTGCTGATCATCTGTGAGCCTTACTTCATTAGAATGC-TTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGGAGGTGCTGATCATCTGTGAGCCTTACTTCATTAGAATGCTTTTTTA  950

seq1  CTTTCTACTCCTACCAGTCCCAATGGCATGATTCAGGCAAGTTCAGCTCC  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTCTACTCCTACCAGTCCCAATGGCATGATTCAGCCAAGTTCAGCTCC  1000

seq1  ATGGTACAAAGAGAGTTTCTGTGATACAGAGGTGTTTG-ATGTGTTCATC  1048
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGGTACAAAGAGAGTTTCTGTGATACAGAGGTGTTTGAATGTGTTCATC  1050

seq1  ATGTTGAGCTGTCAATAGGGTAGATTCTGCATTTTGGTTCATAAGTCATG  1098
      ||||||||||||| ||| ||||||||||||||||||| ||||||||||||
seq2  ATGTTGAGCTGTC-ATAAGGTAGATTCTGCATTTTGG-TCATAAGTCATG  1098

seq1  TGACAGGAAGCAG-ACATTAA  1118
      ||| ||| ||||| |||||||
seq2  TGA-AGG-AGCAGAACATTAA  1117

seq1: chr8_41582157_41582335
seq2: B6Ng01-234C14.g_120_294 (reverse)

seq1  AAAAAAACAAAATACAGCCGGGCA-TGGTGGCGCACGCCTTTAATCCCAG  49
           || |||||  ||||||| | |||||||||||||||||||||||||
seq2  -----AAAAAAATCAAGCCGGGTAGTGGTGGCGCACGCCTTTAATCCCAG  45

seq1  CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGT  99
      ||||| |||||||||||||||| ||||||||||| |||||||||||||||
seq2  CACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTCCGAGGCCAGCCTGGT  95

seq1  CTACAAAGTAAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT  149
      ||||| ||| |||||||||||||| ||||||| |||||||||| ||||||
seq2  CTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACTCTGTCT  145

seq1  TGAAAAACCAAAAATAAATAAATAAATAAA  179
       ||||||||  |||||||||||||||||||
seq2  CGAAAAACCCTAAATAAATAAATAAATAAA  175