BAC Information

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BAC

Clone NameB6Ng01-234H22
Chromosome8 (Build37)
Map Location 65,506,562 - 65,618,207
singlet/doubletdoublet
Overlap geneSpock3
Upstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234H22.bB6Ng01-234H22.g
ACCGA046246GA046247
length1,1801,137
definitionB6Ng01-234H22.b B6Ng01-234H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,506,562 - 65,507,753)(65,617,059 - 65,618,207)
sequence
gaattccatgctatgacagcaggccccgacaggtatggccagcctgttct
catcttgtagaaactgactcagagctccaagatctcgtcacccagcttgc
taagttcccattagcaggtgactatcacgtcaaccacatgcttccaaata
ccagcacccttttggggtgcacttctggcaaacccttgctttgcctcagt
acctttccctctggaatccagtcgagtcaccgagtgaagggaaacaccac
acaaacttagtttagaatcaatggtacctcacttgctgggtgcaacaact
ggaatcctaatcttgtaggtcattttaaacctggtggattctccatctaa
actgaaggtcactagtagctacatcttgtcctccccctgtccctgtcaaa
agcccttttctctctcctgcttcttcctgcttcaacctgcaagtcccacc
tacttgcccagtgattggtttctttattcattaaaggaaggttcacaaga
agtcacctgagtatgtgactcattcctcattccagacaacccctcctggg
agatcaggattatcatcaaaatacaaatagcactagggtcatccacaaca
tatactagcaaagaaacttggaaaaggaacagattttgaagacctagctt
taacaataatattgttttccttcctggcccacaaacaataatgcagtgtc
acatccatatatatatattatccatgcttggcacttataatgtcgcatcc
atgtatgtattacccatgattgacacctacagtgtcacatccatgaatgt
attatcaacatcaatgtgtaaattattcttgattggcacctacaatgact
ctaagaatcacaggtcatttctactgttgcactatttgtgaaaaattaca
gagcattgtcaatgagacctttgagttgaaaccagtgaagagaaatctat
accagacacttttatcatccattccataatcttattctgcaattttcatt
gataaatcttgaatagtctataattctgatagtacatctgtgattactct
atctgctagatgtattgactagaaatcagtactagattactcaaggaact
aaaatatgttctagattcgtattctattcagcagtctgcctaatatcagt
tatccagtagttttccaagcttctttagtg

gaattcaatatttatataaatcactaaaaacataagagatgtttacataa
agcatatctcgctcattgattttttttgtctacagctttctacctcagtg
agagaagactatgaatatttagcttattggcattagacagtataaaatgg
ctatagattatgagagcatgaaaatatcaaataacataaaagtgtaaaga
agcataaaagatataatataaactttgagttctttaacatttattttgag
aatgtaatattatataactttagcgaattttgtgtgtttgttttattttt
actcattctttgaaaagttccaaaaatctattttggtcatattcattgac
cttttcctaaagttccacagacccaccaactaatacaaaaatatggtatc
aagaaaataaaaaataacaccaagtaatacaaaaatatggtagcaagaaa
ctaaaaaatatcatacattaataataatagtagtagtagtaaattaaaat
aaataatacatttatgtttttaaatttatttacttaaagatataaaatgt
ataagtataaaataaaatatctacataatataataaaatagaacttttac
tcttcaaagatatttaagattcagttagtatattaataaacaacactggt
cttcaaataatgcatcattgatttatggggaaattattaaaaataaattt
agtgtcaaaatacacatgtggaaactggaaacaatatagataaaataatt
gtgctgatcgtaaccaaacactgggtgcagacctggtagttagtagcaat
tgatggcttaaaaaccctataattttgtctttattttagaaatgaaaaaa
caataattaaaatagaagtacagctgtagggaaattaccctttttagagt
agtgaaaacagaaatttgtaacagaaaatatatcccccaagggatttttt
ttccctattttcattttatgcataactgcagacatttcaatcaacagtaa
gaaatgcaacgtggtccgcatggttgttgcatgctttaatccagcacttg
ggagcagagcagtgattttctgagttgaagcatcctgacgagtgagtcaa
gaacggcaggctgccaagagaaatcctgtctcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65506562_65507753
seq2: B6Ng01-234H22.b_51_1230

seq1  GAATTCCATGCTATGACAGCAGGCCCCGACAGGTATGGCCAGCCTGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTATGACAGCAGGCCCCGACAGGTATGGCCAGCCTGTTCT  50

seq1  CATCTTGTAGAAACTGACTCAGAGCTCCAAGATCTCGTCACCCAGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTAGAAACTGACTCAGAGCTCCAAGATCTCGTCACCCAGCTTGC  100

seq1  TAAGTTCCCATTAGCAGGTGACTATCACGTCAACCACATGCTTCCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCCATTAGCAGGTGACTATCACGTCAACCACATGCTTCCAAATA  150

seq1  CCAGCACCCTTTTGGGGTGCACTTCTGGCAAACCCTTGCTTTGCCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCCTTTTGGGGTGCACTTCTGGCAAACCCTTGCTTTGCCTCAGT  200

seq1  ACCTTTCCCTCTGGAATCCAGTCGAGTCACCGAGTGAAGGGAAACACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCCTCTGGAATCCAGTCGAGTCACCGAGTGAAGGGAAACACCAC  250

seq1  ACAAACTTAGTTTAGAATCAATGGTACCTCACTTGCTGGGTGCAACAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTAGTTTAGAATCAATGGTACCTCACTTGCTGGGTGCAACAACT  300

seq1  GGAATCCTAATCTTGTAGGTCATTTTAAACCTGGTGGATTCTCCATCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTAATCTTGTAGGTCATTTTAAACCTGGTGGATTCTCCATCTAA  350

seq1  ACTGAAGGTCACTAGTAGCTACATCTTGTCCTCCCCCTGTCCCTGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGTCACTAGTAGCTACATCTTGTCCTCCCCCTGTCCCTGTCAAA  400

seq1  AGCCCTTTTCTCTCTCCTGCTTCTTCCTGCTTCAACCTGCAAGTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTTCTCTCTCCTGCTTCTTCCTGCTTCAACCTGCAAGTCCCACC  450

seq1  TACTTGCCCAGTGATTGGTTTCTTTATTCATTAAAGGAAGGTTCACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCCAGTGATTGGTTTCTTTATTCATTAAAGGAAGGTTCACAAGA  500

seq1  AGTCACCTGAGTATGTGACTCATTCCTCATTCCAGACAACCCCTCCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTGAGTATGTGACTCATTCCTCATTCCAGACAACCCCTCCTGGG  550

seq1  AGATCAGGATTATCATCAAAATACAAATAGCACTAGGGTCATCCACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGATTATCATCAAAATACAAATAGCACTAGGGTCATCCACAACA  600

seq1  TATACTAGCAAAGAAACTTGGAAAAGGAACAGATTTTGAAGACCTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAGCAAAGAAACTTGGAAAAGGAACAGATTTTGAAGACCTAGCTT  650

seq1  TAACAATAATATTGTTTTCCTTCCTGGCCCACAAACAATAATGCAGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAATATTGTTTTCCTTCCTGGCCCACAAACAATAATGCAGTGTC  700

seq1  ACATCCATATATATATATTATCCATGCTTGGCACTTATAATGTCGCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATATATATATATTATCCATGCTTGGCACTTATAATGTCGCATCC  750

seq1  ATGTATGTATTACCCATGATTGACACCTACAGTGTCACATCCATGAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATTACCCATGATTGACACCTACAGTGTCACATCCATGAATGT  800

seq1  ATTATCAACATCAATGTGTAAATTATTCTTGATTGGCACCTACAATGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAACATCAATGTGTAAATTATTCTTGATTGGCACCTACAATGACT  850

seq1  CTAAGAATCACAGGTCATTTCTACTGTTGCACTATTTGTGAAAAATTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATCACAGGTCATTTCTACTGTTGCACTATTTGTGAAAAATTACA  900

seq1  GAGCATTGTCAATGAGACCTTTGAGTTGAAACCAGTGAAGAGAAATCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGTCAATGAGACCTTTGAGTTGAAACCAGTGAAGAGAAATCTAT  950

seq1  ACCAGACACTTTTATCATCCATTCCATAATCTTATTCTGCAATTTTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACTTTTATCATCCATTCCATAATCTTATTCTGCAATTTTCATT  1000

seq1  GATAAAATCTTGAATAGTCTTAATAATTCTGATTAGTTACATCTGTGATT  1050
      ||| ||||||||||||||||  |||||||||| ||| ||||||||||| |
seq2  GAT-AAATCTTGAATAGTCT--ATAATTCTGA-TAG-TACATCTGTGA-T  1044

seq1  TACTTCTAATCTTGCTAGATGTATTGACTAGAAAATCAGGTACTAAGATA  1100
      ||| ||| ||| ||||||||||||||||||| |||||| ||||| |||| 
seq2  TAC-TCT-ATC-TGCTAGATGTATTGACTAG-AAATCA-GTACT-AGATT  1088

seq1  ACTCAAGGGAACTAAAAATATG-TCTAGATTCGGTATTCTATTCAGCAGT  1149
      |||||| |||||| |||||||| ||||||||| |||||||||||||||||
seq2  ACTCAA-GGAACT-AAAATATGTTCTAGATTC-GTATTCTATTCAGCAGT  1135

seq1  CTTTCCTATATCATGTATCATGTAGTTTTCCAAG-TTC-TTAGTG  1192
      ||  |  ||||||  ||||  ||||||||||||| ||| ||||||
seq2  CTGCCTAATATCAGTTATCCAGTAGTTTTCCAAGCTTCTTTAGTG  1180


seq1: chr8_65617059_65618207
seq2: B6Ng01-234H22.g_66_1202 (reverse)

seq1  TTTCTGAGACAGGGTTTCTCTGTGCAGCCCTGGCTGTCCTGGAACTCACT  50
      ||||||||||||| |||||||  ||||||   || || || | |||||||
seq2  TTTCTGAGACAGGATTTCTCTTGGCAGCC--TGCCGTTCTTG-ACTCACT  47

seq1  CTGTCCAGGATGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAA  100
      | || |||||||  ||  |||||||||| ||| ||| ||||| |||||||
seq2  C-GT-CAGGATG--CTTCAACTCAGAAAATCA-CTG-CTCTG-CTCCCAA  90

seq1  GTGCTGGGATTAAAGGCATGC-ACCACCATGCCGGACCACGTTTGCATTT  149
      ||||| |||||||| |||||| || |||||| ||||||||| ||||||||
seq2  GTGCT-GGATTAAA-GCATGCAACAACCATG-CGGACCACG-TTGCATTT  136

seq1  CTTACTGTTGATTGAAATGTCTGCAGTTTATTGCAT-AAATGAAAATAGG  198
      ||||||||||||||||||||||||||||   ||||| |||||||||||||
seq2  CTTACTGTTGATTGAAATGTCTGCAGTT--ATGCATAAAATGAAAATAGG  184

seq1  G-AAAAAAATCCCTT-GGGGATATATTTTCTGTTACAAATTTCTGTTTTC  246
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATCCCTTGGGGGATATATTTTCTGTTACAAATTTCTGTTTTC  234

seq1  ACTACTCTAAAAAGGGTAATTTCCCTACAGCTGTACTTCTATTTTAATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTAAAAAGGGTAATTTCCCTACAGCTGTACTTCTATTTTAATTA  284

seq1  TTGTTTTTTCATTTCTAAAATAAAGACAAAATTATAGGGTTTTTAAGCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTCATTTCTAAAATAAAGACAAAATTATAGGGTTTTTAAGCCA  334

seq1  TCAATTGCTACTAACTACCAGGTCTGCACCCAGTGTTTGGTTACGATCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCTACTAACTACCAGGTCTGCACCCAGTGTTTGGTTACGATCAG  384

seq1  CACAATTATTTTATCTATATTGTTTCCAGTTTCCACATGTGTATTTTGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTATTTTATCTATATTGTTTCCAGTTTCCACATGTGTATTTTGAC  434

seq1  ACTAAATTTATTTTTAATAATTTCCCCATAAATCAATGATGCATTATTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTTATTTTTAATAATTTCCCCATAAATCAATGATGCATTATTTG  484

seq1  AAGACCAGTGTTGTTTATTAATATACTAACTGAATCTTAAATATCTTTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGTGTTGTTTATTAATATACTAACTGAATCTTAAATATCTTTGA  534

seq1  AGAGTAAAAGTTCTATTTTATTATATTATGTAGATATTTTATTTTATACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAAGTTCTATTTTATTATATTATGTAGATATTTTATTTTATACT  584

seq1  TATACATTTTATATCTTTAAGTAAATAAATTTAAAAACATAAATGTATTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTATATCTTTAAGTAAATAAATTTAAAAACATAAATGTATTA  634

seq1  TTTATTTTAATTTACTACTACTACTATTATTATTAATGTATGATATTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAATTTACTACTACTACTATTATTATTAATGTATGATATTTTT  684

seq1  TAGTTTCTTGCTACCATATTTTTGTATTACTTGGTGTTATTTTTTATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTGCTACCATATTTTTGTATTACTTGGTGTTATTTTTTATTTT  734

seq1  CTTGATACCATATTTTTGTATTAGTTGGTGGGTCTGTGGAACTTTAGGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATACCATATTTTTGTATTAGTTGGTGGGTCTGTGGAACTTTAGGAA  784

seq1  AAGGTCAATGAATATGACCAAAATAGATTTTTGGAACTTTTCAAAGAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAATGAATATGACCAAAATAGATTTTTGGAACTTTTCAAAGAATG  834

seq1  AGTAAAAATAAAACAAACACACAAAATTCGCTAAAGTTATATAATATTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATAAAACAAACACACAAAATTCGCTAAAGTTATATAATATTAC  884

seq1  ATTCTCAAAATAAATGTTAAAGAACTCAAAGTTTATATTATATCTTTTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAAATAAATGTTAAAGAACTCAAAGTTTATATTATATCTTTTAT  934

seq1  GCTTCTTTACACTTTTATGTTATTTGATATTTTCATGCTCTCATAATCTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTACACTTTTATGTTATTTGATATTTTCATGCTCTCATAATCTA  984

seq1  TAGCCATTTTATACTGTCTAATGCCAATAAGCTAAATATTCATAGTCTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATTTTATACTGTCTAATGCCAATAAGCTAAATATTCATAGTCTTC  1034

seq1  TCTCACTGAGGTAGAAAGCTGTAGACAAAAAAAATCAATGAGCGAGATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGAGGTAGAAAGCTGTAGACAAAAAAAATCAATGAGCGAGATAT  1084

seq1  GCTTTATGTAAACATCTCTTATGTTTTTAGTGATTTATATAAATATTGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGTAAACATCTCTTATGTTTTTAGTGATTTATATAAATATTGAA  1134

seq1  TTC  1149
      |||
seq2  TTC  1137


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