BAC Information

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BAC

Clone NameB6Ng01-236E02
Chromosome8 (Build37)
Map Location 68,321,996 - 68,469,188
singlet/doubletdoublet
Overlap geneMarch1, LOC100040986
Upstream geneLOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236E02.bB6Ng01-236E02.g
ACCGA047518GA047519
length1,143741
definitionB6Ng01-236E02.b B6Ng01-236E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,321,996 - 68,322,837)(68,468,638 - 68,469,188)
sequence
gaattcattctttttaatagctgagtagtattccattgtgtaaatgtacc
acatttcctgtatccattcctctgttgaggggcatctgggttctttccag
cttctggctgttataaataaggctgctatgaacatagtggagcatgtgtt
cttcttgccagttgggacatcttctgtatatattcccaggggaggtattg
ctggatcctccggtagtactatgtccaattttctgaggaaccgccagact
gatttccagagtggttatacaagtttgcaatcccaccaacggtggaggac
tgttcctctttttccacatccttgccagcatctgctgtcacctgaatttt
tgatcttagccattctgactggtgtgaggtggaatctcagggttgttttg
atttgcatttccctgatgattaaggctgttgaacattttttcaggtgctt
ctcagacattcagtattcctcaggtgagaattctttgtttagctctgagc
cccatttttaatggggttatttgattttctggagtccaccttcttgagtt
cttcatatatattggatattagtcccctatctgatttaggataggtaaag
atcctttcccaatctgttggtggcctttttgtcttattgatggtgtcttt
tgccttgcagaagctttgcaattttatgaggtcccatttgtcaattctcg
atcttacagcacaagccattgctgttctattcaggaatttttcccctgta
cccatatcttcaaggtttttccctactttcttctctataagttgcaaaaa
gaagtttctctgatgaaaatatttagaagtatattgttactatgtctttt
attttgttttcttttcttttgtttgtttgtttgtttgtttgtttgtttgt
gacagggtttcactgtatagtcctggctgtcctggaactcactctgtaga
ccaggctgtcctggaaatcagaaatctgcctgcctctgcctcctgagtgc
tgggattaaagtgtgtgctaccatgccgctactctgtctttttagcagaa
taaatatttgtcgtcttaggagttgtaatccttaaccttgttaccatttg
acttattcttaacgatactaagaccttgagtttcaatattata
gaattcttataggatcattattaagacttaagaagtcatctatttgtctg
tatagctacaagacagtctatgtcactacaagacagttcatcttcataga
tctgcagtgatctggtcaaaagggtgggatagtatctatttatatatata
tatatatatacatacatatatatatatattaatacatatatatatgtgtg
tgtgtgtgtgtgtgtgtttaataatattaggaaaggcatattaatatcgg
gaacctttcataaaataaattcttttagggccttgtctataagagagaat
ttatcatggattatatcataatttgaagcagaccatctcaggaagatcac
ttgctagttattagcttgtcctattatggctcctgacattttcctgttac
ctttctctagacctgttttccaggaaacatccaagtctttcagacttggt
tactttcaagttcttgcaaattctctactatcaaacagacagcaggttat
gctatttatggtgctcaagtgagttttcatcatggagaaaaaaaaaaact
atggaagtcatgagctttcccacataatttgcatacagcaacaatgaaaa
gaaatcaacaaaaagacgacaattattttgttcagaaaaccagacacaag
taccattgctttcttgagattaaaatatttaatcatcattgtattatttt
gtctggataaaccaacgtaaacgtgtaatttaataataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_68321996_68322837
seq2: B6Ng01-236E02.b_327_1173

seq1  GGACTGTTCCTCTTTTTCCACATCCTTGCCAGCATCTGCTGTCACCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTCCTCTTTTTCCACATCCTTGCCAGCATCTGCTGTCACCTGAA  50

seq1  TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGT  100

seq1  TTTGATTTGCATTTCCCTGATGATTAAGGCTGTTGAACATTTTTTCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGCATTTCCCTGATGATTAAGGCTGTTGAACATTTTTTCAGGT  150

seq1  GCTTCTCAGACATTCAGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGACATTCAGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCT  200

seq1  GAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTG  250

seq1  AGTTCTTCATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGT  300

seq1  AAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGT  350

seq1  CTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATT  400

seq1  CTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCC  450

seq1  TGTACCCATATCTTCAAGGTTTTTCCCTACTTTCTTCTCTATAAGTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCATATCTTCAAGGTTTTTCCCTACTTTCTTCTCTATAAGTTGCA  500

seq1  AAAAGAAGTTTCTCTGATGAAAATATTTAGAAGTATATTGTTACTATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTTTCTCTGATGAAAATATTTAGAAGTATATTGTTACTATGTC  550

seq1  TTTTATTTTGTTTTCTTTTCTTTTGTTTGTTTGTTTGTTTGTTTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGTTTTCTTTTCTTTTGTTTGTTTGTTTGTTTGTTTGTTTGT  600

seq1  TTGTGACAGGGTTTCACTGTATAGTCCTGGCTGTCCTGGAACTCACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAGGGTTTCACTGTATAGTCCTGGCTGTCCTGGAACTCACTCTG  650

seq1  TAGACCAGGCTGTCCTGGAAATCAGAAATCTGCCTGCCTCTGCCTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGTCCTGGAAATCAGAAATCTGCCTGCCTCTGCCTCCTGA  700

seq1  GTGCTGGGATTAAAGGTGTGTGCTACCATGCCCGGCTACTCTGTCTTTTT  750
      |||||||||||||| |||||||||||||||||  ||||||||||||||||
seq2  GTGCTGGGATTAAA-GTGTGTGCTACCATGCC--GCTACTCTGTCTTTTT  747

seq1  AGCAGAAT-AATA-TTGTCGTC-TAGGAGTTGTAATCC-TAACC-TGTTA  795
      |||||||| |||| |||||||| ||||||||||||||| ||||| |||||
seq2  AGCAGAATAAATATTTGTCGTCTTAGGAGTTGTAATCCTTAACCTTGTTA  797

seq1  CCCATTTTGAACTAT--CTAACGATACT-AGA-CATGAG-TTCAATATTA  840
      ||   |||||  |||   |||||||||| ||| | |||| ||||||||||
seq2  CC--ATTTGACTTATTCTTAACGATACTAAGACCTTGAGTTTCAATATTA  845

seq1  TA  842
      ||
seq2  TA  847

seq1: chr8_68468638_68469188
seq2: B6Ng01-236E02.g_246_801 (reverse)

seq1  ATTTATTATT-AATTACACGTTTAC-ATGGTTTATCCAGACAAAATAATA  48
      |||||||||| ||||||||||||||  |||||||||||||||||||||||
seq2  ATTTATTATTAAATTACACGTTTACGTTGGTTTATCCAGACAAAATAATA  50

seq1  CAATGATGATTAAATATTTTAATCTCAAGAAAGCAATGGTACTTGTGTCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGATTAAATATTTTAATCTCAAGAAAGCAATGGTACTTGTGTCT  100

seq1  GGTTTTCTGAACAAAAT-ATTGTCGTC-TTTTGTTGATTTCTTTTCATTG  146
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  GGTTTTCTGAACAAAATAATTGTCGTCTTTTTGTTGATTTCTTTTCATTG  150

seq1  TTGCTGTATGC-AATTATGTGGGAAAGCTCATGACTTCCATAGTTTTTTT  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATGCAAATTATGTGGGAAAGCTCATGACTTCCATAGTTTTTTT  200

seq1  TTTTCTCCATGATGAAAACTCACTTGAGCACCATAAATAGCATAACCTGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCATGATGAAAACTCACTTGAGCACCATAAATAGCATAACCTGC  250

seq1  TGTCTGTTTGATAGTAGAGAATTTGCAAGAACTTGAAAGTAACCAAGTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTGATAGTAGAGAATTTGCAAGAACTTGAAAGTAACCAAGTCT  300

seq1  GAAAGACTTGGATGTTTCCTGGAAAACAGGTCTAGAGAAAGGTAACAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTTGGATGTTTCCTGGAAAACAGGTCTAGAGAAAGGTAACAGGA  350

seq1  AAATGTCAGGAGCCATAATAGGACAAGCTAATAACTAGCAAGTGATCTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGGAGCCATAATAGGACAAGCTAATAACTAGCAAGTGATCTTC  400

seq1  CTGAGATGGTCTGCTTCAAATTATGATATAATCCATGATAAATTCTCTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGGTCTGCTTCAAATTATGATATAATCCATGATAAATTCTCTCT  450

seq1  TATAGACAAGGCCCTAAAAGAATTTATTTTATGAAAGGTTCCCGATATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAAGGCCCTAAAAGAATTTATTTTATGAAAGGTTCCCGATATTA  500

seq1  ATATGCCTTTCCTAATATTATTAAACACACACACACACACACACACATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTTTCCTAATATTATTAAACACACACACACACACACACACATAT  550

seq1  ATATAT  551
      ||||||
seq2  ATATAT  556