BAC Information

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BAC

Clone NameB6Ng01-240H20
Chromosome8 (Build37)
Map Location 55,490,931 - 55,606,234
singlet/doubletdoublet
Overlap geneSpcs3
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneAsb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H20.bB6Ng01-240H20.g
ACCGA050648GA050649
length1,0191,116
definitionB6Ng01-240H20.b B6Ng01-240H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,490,931 - 55,491,947)(55,605,114 - 55,606,234)
sequence
gaattcagcttggatattatccggccccatgaaagaaggaaattccctaa
tttttagcaacatgaatgaaattgaaggtgattgcatgatctgaaataag
tcagtcatagaaggggaaacactgtgtgatcccatttacatgagaactca
gtaactgccagatttacaggagcagagacaagaataatggtttccagggt
agagaaaatgaaacgctgctgttcatttcagtgttcctagataagtaaag
tatagagacttgttcaacccagtgcctacagtttatagtcccgcattgtg
tacttgagagcccttcaaacaagctggcactttattatgctcctatcata
cagatagacacaaaggaaaccagggagtgttgctgagccccttgcttcag
ctgtggggacaatggcactgattctgaatgtgttccaactcaacatgaac
tgtgcacctgacaaaggcaaagctcagtgtatttgaagtctacttcaata
aaactattgttaaatgagattgttggtagagccaactgcctcatggaaat
catatcatcaggcttacattgttcagtgttttagaactccaatgaactgg
ctaaaatagtctaatgttgctggcagagaggataaataatgtttatgtac
ttaatttatttttatacactttaactaaaaatataattaacctttttctc
cttccattttctctctaggctgtcaagtcccctccctctaactcctccag
tcctccccaccgactctcacagtaatagcctctttttttatttttgctac
atatagagagatagatatggatgtgtaaatatataaatacaacctggtga
gcctgtttttgttttttcatgtgtatacagtttcaggacttacatgtttg
taatgggtaaacagttcaaagactcaacctcgacaaaggctaatctcctt
ttccatgaagacgttgtctgtaagttttttggtttggtttgtttgttttt
gctttttggctgatttgtt

gaattcctttgctgggaattgttttacagctcttcagtggtctttctagc
cagttattcctgtgaagaattggactttgaggagctaaagctttgaatgg
gggctggtgcaggggcctgggagtggagagtctgctttcagatactttaa
cctcggagctgtgacctttgattgtagcaaacatcgatttcaaaagcttc
ttttgctttcagtcacaagcctgcgtaccttactgcgagactgccaatgc
ttcaaagatgtatgtttgaaaaagttctttcatagtttttatgaaatttg
ggaagttgtttacttaaacaaatgcacaagaaaataattcataaaaatac
tgaatatatatgtgcaaaatttttcttagctacaataaatgttcaacatt
tttctaataaagattttttttctgagtaaaaatatgcattttaaagactt
ccaggtttatgtgtttttgtgaagctgctaaatcaaaaagaaaaacagta
gtgcacttgagggatggtaaaacttttatcttctagaaaaaaatgtagaa
gactgcacttgaggtttgaggaaggagtgtgcagtggggctttaggggtt
cattcactctgctacccagatgttcccagagtttgtgtcctcaaagggca
ggctgtcagttgtgcttgtatcttgtccagtactcagcacaccgtcttgc
agttgataggcgggtgcccaataaatgacaaagtgcttgtgtctaatgtg
accaggacatagattaccctgtacgctatcccctttgtaaatactgcttt
tattttttttctctctcacactcatgatttctcctccttctcttcaagct
ctgttggattatccaataaaagtaaatgggggggtgttgccccggggtct
gtcactaccctgtcccaggttttcatagtaagaggacctactgataatga
cttgtgaccagggtaattaaggaacagcccaagcccaaagagactcaagt
aaatactcacgatccatgcccaagcattgctctgagaatgatcttgcctg
tattagttcttgaaagccagagttatttcctggagcctcagtctgacata
ttaactccagttgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55490931_55491947
seq2: B6Ng01-240H20.b_56_1065

seq1  TTGGATATTATCCGGCCCCATGAAAGAAGGAAATTCCCTAATTTTTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTATCCGGCCCCATGAAAGAAGGAAATTCCCTAATTTTTAGCA  50

seq1  ACATGAATGAAATTGAAGGTGATTGCATGATCTGAAATAAGTCAGTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGAAATTGAAGGTGATTGCATGATCTGAAATAAGTCAGTCATA  100

seq1  GAAGGGGAAACACTGTGTGATCCCATTTACATGAGAACTCAGTAACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAAACACTGTGTGATCCCATTTACATGAGAACTCAGTAACTGCC  150

seq1  AGATTTACAGGAGCAGAGACAAGAATAATGGTTTCCAGGGTAGAGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACAGGAGCAGAGACAAGAATAATGGTTTCCAGGGTAGAGAAAAT  200

seq1  GAAACGCTGCTGTTCATTTCAGTGTTCCTAGATAAGTAAAGTATAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGCTGCTGTTCATTTCAGTGTTCCTAGATAAGTAAAGTATAGAGAC  250

seq1  TTGTTCAACCCAGTGCCTACAGTTTATAGTCCCGCATTGTGTACTTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAACCCAGTGCCTACAGTTTATAGTCCCGCATTGTGTACTTGAGA  300

seq1  GCCCTTCAAACAAGCTGGCACTTTATTATGCTCCTATCATACAGATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCAAACAAGCTGGCACTTTATTATGCTCCTATCATACAGATAGAC  350

seq1  ACAAAGGAAACCAGGGAGTGTTGCTGAGCCCCTTGCTTCAGCTGTGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAAACCAGGGAGTGTTGCTGAGCCCCTTGCTTCAGCTGTGGGGA  400

seq1  CAATGGCACTGATTCTGAATGTGTTCCAACTCAACATGAACTGTGCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCACTGATTCTGAATGTGTTCCAACTCAACATGAACTGTGCACCT  450

seq1  GACAAAGGCAAAGCTCAGTGTATTTGAAGTCTACTTCAATAAAACTATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCAAAGCTCAGTGTATTTGAAGTCTACTTCAATAAAACTATTG  500

seq1  TTAAATGAGATTGTTGGTAGAGCCAACTGCCTCATGGAAATCATATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGATTGTTGGTAGAGCCAACTGCCTCATGGAAATCATATCATC  550

seq1  AGGCTTACATTGTTCAGTGTTTTAGAACTCCAATGAACTGGCTAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACATTGTTCAGTGTTTTAGAACTCCAATGAACTGGCTAAAATAG  600

seq1  TCTAATGTTGCTGGCAGAGAGGATAAATAATGTTTATGTACTTAATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTGCTGGCAGAGAGGATAAATAATGTTTATGTACTTAATTTAT  650

seq1  TTTTATACACTTTAACTAAAAATATAATTAACCTTTTTCTCCTTCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACACTTTAACTAAAAATATAATTAACCTTTTTCTCCTTCCATTT  700

seq1  TCTCTCTAGGCTGTCAAGTCCCCTCCCTCTAACTCCTCCAGTCCTCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGGCTGTCAAGTCCCCTCCCTCTAACTCCTCCAGTCCTCCCCA  750

seq1  CCGACTCTCACAGTAATAGCCTCTTTTTTTATTTTTGCTACATATAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTCTCACAGTAATAGCCTCTTTTTTTATTTTTGCTACATATAGAGA  800

seq1  GATAGATATGGATGTGTAAATATATAAATACAACCTGGTGAGCCTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATATGGATGTGTAAATATATAAATACAACCTGGTGAGCCTGTTTT  850

seq1  TGTTTTTTCATGTGTATACAGTTTCAGGACTTACATGTTTGTAATGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCATGTGTATACAGTTTCAGGACTTACATGTTTGTAATGGGTA  900

seq1  AACAGTTCAAAGACTCAACCTCGACAAAGGCTAATCTCCTTTTCCATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCAAAGACTCAACCTCGACAAAGGCTAATCTCCTTTTCCATGAA  950

seq1  GACGGTTGTCTGTAAGTTTTTTGGTTTTGGTTTTGTTTGTTTTTTGCTTT  1000
      ||| |||||||||||||||||||||||  | |||||||| ||||||| ||
seq2  GAC-GTTGTCTGTAAGTTTTTTGGTTT--GGTTTGTTTG-TTTTTGC-TT  995

seq1  TTTGGCTTGGTTTTGTT  1017
      |||||||  | ||||||
seq2  TTTGGCT--GATTTGTT  1010


seq1: chr8_55605114_55606234
seq2: B6Ng01-240H20.g_63_1178 (reverse)

seq1  GGTCAAACTGGAGTTAATATGCCCAGAACCTGAGGCT-CAGGAAAT-ACT  48
      |||| ||||||||||||||||  ||||  |||||||| |||||||| |||
seq2  GGTC-AACTGGAGTTAATATG-TCAGA--CTGAGGCTCCAGGAAATAACT  46

seq1  CTGGGCTTTCAAAGAACT-ATACA-GCAAGATTCATTTCTTCAGAGCAAT  96
      || ||||||| ||||||| ||||| |||||| |||||   ||||||||||
seq2  CT-GGCTTTC-AAGAACTAATACAGGCAAGA-TCATT--CTCAGAGCAAT  91

seq1  GCTT-GGCATGGATCGTGAGTATTTTACTTGAGTCTCTTTGGGCTTTGGG  145
      |||| ||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GCTTGGGCATGGATCGTGAGTA-TTTACTTGAGTCTCTTTGGGC-TTGGG  139

seq1  CTGTTTCCTTAATTACCCTTGTCACAAGTCATTATCAGTAGGTCCTCTTA  195
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTG-TTCCTTAATTACCCTGGTCACAAGTCATTATCAGTAGGTCCTCTTA  188

seq1  CTATGAAAACCTGGGACAGGGTAGTGACAGACCCCGGGGCAACA-CCCCC  244
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTATGAAAACCTGGGACAGGGTAGTGACAGACCCCGGGGCAACACCCCCC  238

seq1  CATTTACTTTTATTGGATAATCCAACAGAGCTTGAAGAGAAGGAGGAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTTTATTGGATAATCCAACAGAGCTTGAAGAGAAGGAGGAGAA  288

seq1  ATCATGAGTGTGAGAGAG-AAAAAAATAAAAGCAGTATTTACAAAGGGGA  343
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCATGAGTGTGAGAGAGAAAAAAAATAAAAGCAGTATTTACAAAGGGGA  338

seq1  TAGCGTACAGGGTAATCTATGTCCTGGTCACATTAGACACAAGCACTTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTACAGGGTAATCTATGTCCTGGTCACATTAGACACAAGCACTTTG  388

seq1  TCATTTATTGGGCACCCGCCTATCAACTGCAAGACGGTGTGCTGAGTACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTGGGCACCCGCCTATCAACTGCAAGACGGTGTGCTGAGTACT  438

seq1  GGACAAGATACAAGCACAACTGACAGCCTGCCCTTTGAGGACACAAACTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGATACAAGCACAACTGACAGCCTGCCCTTTGAGGACACAAACTC  488

seq1  TGGGAACATCTGGGTAGCAGAGTGAATGAACCCCTAAAGCCCCACTGCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACATCTGGGTAGCAGAGTGAATGAACCCCTAAAGCCCCACTGCAC  538

seq1  ACTCCTTCCTCAAACCTCAAGTGCAGTCTTCTACATTTTTTTCTAGAAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCTCAAACCTCAAGTGCAGTCTTCTACATTTTTTTCTAGAAGA  588

seq1  TAAAAGTTTTACCATCCCTCAAGTGCACTACTGTTTTTCTTTTTGATTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTTACCATCCCTCAAGTGCACTACTGTTTTTCTTTTTGATTTA  638

seq1  GCAGCTTCACAAAAACACATAAACCTGGAAGTCTTTAAAATGCATATTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCACAAAAACACATAAACCTGGAAGTCTTTAAAATGCATATTTT  688

seq1  TACTCAGAAAAAAAATCTTTATTAGAAAAATGTTGAACATTTATTGTAGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAAAAAAAATCTTTATTAGAAAAATGTTGAACATTTATTGTAGC  738

seq1  TAAGAAAAATTTTGCACATATATATTCAGTATTTTTATGAATTATTTTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAATTTTGCACATATATATTCAGTATTTTTATGAATTATTTTCT  788

seq1  TGTGCATTTGTTTAAGTAAACAACTTCCCAAATTTCATAAAAACTATGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTGTTTAAGTAAACAACTTCCCAAATTTCATAAAAACTATGAA  838

seq1  AGAACTTTTTCAAACATACATCTTTGAAGCATTGGCAGTCTCGCAGTAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTTCAAACATACATCTTTGAAGCATTGGCAGTCTCGCAGTAAG  888

seq1  GTACGCAGGCTTGTGACTGAAAGCAAAAGAAGCTTTTGAAATCGATGTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCAGGCTTGTGACTGAAAGCAAAAGAAGCTTTTGAAATCGATGTTT  938

seq1  GCTACAATCAAAGGTCACAGCTCCGAGGTTAAAGTATCTGAAAGCAGACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATCAAAGGTCACAGCTCCGAGGTTAAAGTATCTGAAAGCAGACT  988

seq1  CTCCACTCCCAGGCCCCTGCACCAGCCCCCATTCAAAGCTTTAGCTCCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCCCAGGCCCCTGCACCAGCCCCCATTCAAAGCTTTAGCTCCTC  1038

seq1  AAAGTCCAATTCTTCACAGGAATAACTGGCTAGAAAGACCACTGAAGAGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAATTCTTCACAGGAATAACTGGCTAGAAAGACCACTGAAGAGC  1088

seq1  TGTAAAACAATTCCCAGCAAAGGAATTC  1121
      ||||||||||||||||||||||||||||
seq2  TGTAAAACAATTCCCAGCAAAGGAATTC  1116


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