BAC Information

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BAC

Clone NameB6Ng01-241D04
Chromosome8 (Build37)14 (Build37)
Map Location 17,122,620 - 17,122,74545,498,994 - 45,499,806
singlet/doubletsingletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241D04.bB6Ng01-241D04.g
ACCGA051175GA051176
length912791
definitionB6Ng01-241D04.b B6Ng01-241D04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,122,620 - 17,122,745)(45,498,994 - 45,499,806)
sequence
gaattctctatctagtacatttatttgtatatccaagccattgcagttgt
cagtagtaattaattattctacaattggaaaatttcagttggctcaactt
acattaagaacatccacatggaagctagagagatggctcagtggctagag
tatttactgctctttcagaggacctgagttcagttccagcgcctatatga
gatggctcacatctgccagtaacttcaggtttaagagttccaatgacctc
ttttggcatctgcaaatgtcatacacgtgtgtgtgtgtgtgtgtgtgtgt
gtgcgtgcacctgcatataattaaaacataaaaatattctaaatttgctc
tattctcctactacctcgctacctactttcatcataggatctgtggatcc
tgaaccacacagagaaacttccctttccccaaccgtcttccctgctggct
gagtgctctgtagcaagccaagctgccttgagaagcctgctatcccagga
ggacctctattctcctgccacctctcttccctccttcatcaaacccgttg
atgaaccatacagataagcctcctttcccccaccaatctcccctgctagc
tgagtccttttggacatgtgcaagctgctctgagcagtctgctagcccag
gtggaccttcattctcctgcaaagtctctgcccatctttttctggatctg
cagctcctggactactacatacaggcagacaaatcttacagacttgcaga
tccagaaccatacaatgcaagaatactcctgagaggcttgccacaccagg
gccatttaacgttaattctcctctcaagtacctactacaacatgaacatc
cagggactaaagccatcttagatggcagaaagtcccttgaaagaacacag
ccaacagagcca
gaattcttaaatgaagactctatggaacagtggaaaagcctacagggacc
aatgaggagaaggcaaaaatgaagtgagttttcagtttattatatctggg
gataccaggaggacattcagataaagactttccacttcctgtcagcccta
ggactcctatatttcaagttctgtagacattacccctgaactgatcttat
gtggatatattatggattgggctggattcaattagcgtgtgtcaggaaag
aggtgccccatctaagttcggaaatggaggaagagttagtgaagtgctta
gaaagatgtgagaggagaacagaagtgttgtagcacccagactctagcaa
cacagttcttaatgctgaaaaagcacatagtggttagtggaaatttcaag
aaaacagtagaagctgaggtcatagttgtggaagaaacttccagaaagaa
tcaggagccttttgtgagctactgcccacctgaagacacacaggaggaat
tgaagggctccctcaaactcacagccatttcccatgacctaaccattgcc
taaaccaactgggaatatgtgggcaagggagcctattctatcaaatccag
gaggtcagtcttcaggagtgtaggataggtcagaaagagcaaagatgggt
cttatgcaaaataggctctagcaataactgtctaatttctgctgtcatgg
ctctttgcagccctttgtgtttcttttaatgcaatctctctctctctctc
tctctctctctctctctctctctgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17122620_17122745
seq2: B6Ng01-241D04.b_61_350

seq1  --------------------------------------------------  0
                                                        
seq2  CATTTATTTGTATATCCAAGCCATTGCAGTTGTCAGTAGTAATTAATTAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TCTACAATTGGAAAATTTCAGTTGGCTCAACTTACATTAAGAACATCCAC  100

seq1  ---------------------------------CATTTATTTGTATATC-  16
                                        ||||| |  | | || 
seq2  ATGGAAGCTAGAGAGATGGCTCAGTGGCTAGAGTATTTACTGCTCTTTCA  150

seq1  ----CCCAATGTTAAAGGC---TGTATGTATAAAATAAATCACAAAAG--  57
           ||   ||| |   |    |  | ||| | ||   |||||   |  
seq2  GAGGACCTGAGTTCAGTTCCAGCGCCTATATGAGATGGCTCACATCTGCC  200

seq1  TGTGACTT------------ATACATT--TGTCTGTGTGCATGTG-----  88
       || ||||             | || |    ||| |  |||| ||     
seq2  AGTAACTTCAGGTTTAAGAGTTCCAATGACCTCTTTTGGCATCTGCAAAT  250

seq1  --CGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTG  126
        | | || | |||||||||||||||||||||||||||||
seq2  GTCATACACGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTG  290

seq1: chr14_45498994_45499806
seq2: B6Ng01-241D04.g_65_855

seq1  GAATTCTTAAATGAAGACTCTATGGAACAGTGGAAAAGCCTACAGGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGAAGACTCTATGGAACAGTGGAAAAGCCTACAGGGACC  50

seq1  AATGAGGAGAAGGCAAAAATGAAGTGAGTTTTCAGTTTATTATATCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAGAAGGCAAAAATGAAGTGAGTTTTCAGTTTATTATATCTGGG  100

seq1  GATACCAGGAGGACATTCAGATAAAGACTTTCCACTTCCTGTCAGCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGGAGGACATTCAGATAAAGACTTTCCACTTCCTGTCAGCCCTA  150

seq1  GGACTCCTATATTTCAAGTTCTGTAGACATTACCCCTGAACTGATCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTATATTTCAAGTTCTGTAGACATTACCCCTGAACTGATCTTAT  200

seq1  GTGGATATATTATGGATTGGGCTGGATTCAATTAGCGTGTGTCAGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATATTATGGATTGGGCTGGATTCAATTAGCGTGTGTCAGGAAAG  250

seq1  AGGTGCCCCATCTAAGTTCGGAAATGGAGGAAGAGTTAGTGAAGTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCCCATCTAAGTTCGGAAATGGAGGAAGAGTTAGTGAAGTGCTTA  300

seq1  GAAAGATGTGAGAGGAGAACAGAAGTGTTGTAGCACCCAGACTCTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGTGAGAGGAGAACAGAAGTGTTGTAGCACCCAGACTCTAGCAA  350

seq1  CACAGTTCTTAATGCTGAAAAAGCACATAGTGGTTAGTGGAAATTTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTTAATGCTGAAAAAGCACATAGTGGTTAGTGGAAATTTCAAG  400

seq1  AAAACAGTAGAAGCTGAGGTCATAGTTGTGGAAGAAACTTCCAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTAGAAGCTGAGGTCATAGTTGTGGAAGAAACTTCCAGAAAGAA  450

seq1  TCAGGAGCCTTTTGTGAGCTACTGCCCACCTGAAGACACACAGGAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCCTTTTGTGAGCTACTGCCCACCTGAAGACACACAGGAGGAAT  500

seq1  TGAAGGGCTCCCTCAAACTCACAGCCATTTCCCATGACCTAACCATTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGCTCCCTCAAACTCACAGCCATTTCCCATGACCTAACCATTGCC  550

seq1  TAAACCAACTGGGAATATGTGGGCAAGGGAGCCTATTCTATCAAATCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAACTGGGAATATGTGGGCAAGGGAGCCTATTCTATCAAATCCAG  600

seq1  GAGGTCAGTCTTCAGGAGTGTAGGATAGGTCAGAAAGAGCAAAGATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGTCTTCAGGAGTGTAGGATAGGTCAGAAAGAGCAAAGATGGGT  650

seq1  CTTATGCAAAATAGGCTCTAGCAATAACTGTCTAATTTCTGCTGTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCAAAATAGGCTCTAGCAATAACTGTCTAATTTCTGCTGTCATGG  700

seq1  CTCTTTGCAGCCCTTTGTGTTTCTTTTAATGCAATCTCTCTCTCTCTCTC  750
      ||||||||||||||||||||||||||||||||||                
seq2  CTCTTTGCAGCCCTTTGTGTTTCTTTTAATGCAA----------------  734

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG  800
            ||||||||||||||||||||||||||||||||||||||||||||
seq2  ------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG  778

seq1  TGTGTGTGTGTGT  813
      |||||||||||||
seq2  TGTGTGTGTGTGT  791