BAC Information

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BAC

Clone NameB6Ng01-245F12
Chromosome8 (Build37)
Map Location 34,400,785 - 34,530,708
singlet/doubletdoublet
Overlap geneWrn, Purg
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245F12.bB6Ng01-245F12.g
ACCGA054251GA054252
length9331,173
definitionB6Ng01-245F12.b B6Ng01-245F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,400,785 - 34,401,728)(34,529,519 - 34,530,708)
sequence
gaattctaacagctcagtccagcgagcaatcaataaccaatggaattcta
acagctcagtccagcgagcagtcaataaccaatggaattctaacagctca
gtccagcgagcagtcaataaccaatggaattctaacagctcagtccagct
agcagtcaataaccaatggaattctaagcttcaccggattattctttcat
ttgatgttaactaatctattaaccagattttcacactgtccctataaact
tttagatataaatgaaaactattctaccaaataagttattcatcatttca
ttttttaaaaagccaccttaaaatggcaaatgtaggaaggacgaaactaa
gggttgggataaaatttgagaacagacagttataaacaaatcatggaaag
ctaatgtgcatgggatttgagtatatatgacataaaggaaattccctttg
tttctaaaattgtaaaacagaaaatggctttatgcatcagtctaacatat
gaagagctacagaggtcagcctctgtgcctgccatacagtaaaaatccac
tgtaaaatggtcaggaagtagctatctagaagtcattacatttatgaatt
cagtcggcactcaacgaacacccaacaaaaagtaatcagctctaagagtc
cagataagtctacactgatgacaacatgcctttcactgtgctaagaaagg
ggaaggttcgaagcatatgccaggcttctgaattgtgaccaggaaggagt
ctatcagttcagctgttagacaaaacactacctcgggctacctagaatgc
aactattcatctaaactttaatttttataatatggattcgaattgatgac
ttcctgtactagaaagagaaaattcagcagggcatgcaaaatatagatag
gtaggtaagtaggtaggtaggtagggtaggtag
gaattccccactgaagaaagaaaatggtggccaattgactaaggtaatct
aatctctctagcacttatacctttcctttaaaaagtaatttctaaaatta
atgaaataatcaggcttataaaataatttacaaaaaggaaagcaaaactc
aaagtctgtgtcttagacacggtttcttccaattccccaggagtaacact
ctttttttttggttgtaaattatttcatttctccactggatatctggcac
tgaaaaatagtttcttcctgaccttgttttgagggactttcttatgaatt
cattcagaatgaactaacaaaactgagtctctaaactcacaaagctggga
gcccatccttagaagtaatttttcattgcatgtcttttgttaggtctttt
acgacatcaaacattctgttttgttaaaaagtgtaagctttgtctaccat
tcacagagtacaagacatcaatttgcaaaatgaattatgtgtagcgctga
gcccactgcactgtgcgctctattcagcccgatgaagtactgctcagttt
ttgagtgaactgtattgctttttacacccacctcctctttccaaggagaa
agcggagaacaaggaagacagcgttatttctaagtgtgaatctgaatctg
gttcagcggagaacgaacacagcggaacaggtctgaagtgaactccatag
gctcgttctcattgatgcttaaaattactgtctactttcagactcgaaac
aacttctgatgtcacaaattaattcccaaagatgagtgagcctaggcttt
cagtgttaaaattttaataaaaagattctctttaatggagaatatctgaa
tttctttagaaaatgcttgacaatacataaatgaagaaaatacctaataa
aaaataataataaaaaaattttattgaacagaaaaaaatgcttccctgca
aggacatagaaggaaacaaaagatctagatctgtaatgaaattattttta
tgatcagaaaagacatttccaaaatatgtgaaacctactggacagatgta
tactttatattctttgaatcagtttgctagagggaactcatttctttcaa
tttaaggcagattgtcatcaattttgtgaagtctaagattgagtctagca
tcttatgtgtgctgggccaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_34400785_34401728
seq2: B6Ng01-245F12.b_48_980

seq1  GAATTCTAACAGCTCAGTCCAGCGAGCAATCAATAACCAATGGAATTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACAGCTCAGTCCAGCGAGCAATCAATAACCAATGGAATTCTA  50

seq1  ACAGCTCAGTCCAGCGAGCAGTCAATAACCAATGGAATTCTAACAGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAGTCCAGCGAGCAGTCAATAACCAATGGAATTCTAACAGCTCA  100

seq1  GTCCAGCGAGCAGTCAATAACCAATGGAATTCTAACAGCTCAGTCCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCGAGCAGTCAATAACCAATGGAATTCTAACAGCTCAGTCCAGCT  150

seq1  AGCAGTCAATAACCAATGGAATTCTAAGCTTCACCGGATTATTCTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAATAACCAATGGAATTCTAAGCTTCACCGGATTATTCTTTCAT  200

seq1  TTGATGTTAACTAATCTATTAACCAGATTTTCACACTGTCCCTATAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTAACTAATCTATTAACCAGATTTTCACACTGTCCCTATAAACT  250

seq1  TTTAGATATAAATGAAAACTATTCTACCAAATAAGTTATTCATCATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATATAAATGAAAACTATTCTACCAAATAAGTTATTCATCATTTCA  300

seq1  TTTTTTAAAAAGCCACCTTAAAATGGCAAATGTAGGAAGGACGAAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAGCCACCTTAAAATGGCAAATGTAGGAAGGACGAAACTAA  350

seq1  GGGTTGGGATAAAATTTGAGAACAGACAGTTATAAACAAATCATGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGGATAAAATTTGAGAACAGACAGTTATAAACAAATCATGGAAAG  400

seq1  CTAATGTGCATGGGATTTGAGTATATATGACATAAAGGAAATTCCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTGCATGGGATTTGAGTATATATGACATAAAGGAAATTCCCTTTG  450

seq1  TTTCTAAAATTGTAAAACAGAAAATGGCTTTATGCATCAGTCTAACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAATTGTAAAACAGAAAATGGCTTTATGCATCAGTCTAACATAT  500

seq1  GAAGAGCTACAGAGGTCAGCCTCTGTGCCTGCCATACAGTAAAAATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTACAGAGGTCAGCCTCTGTGCCTGCCATACAGTAAAAATCCAC  550

seq1  TGTAAAATGGTCAGGAAGTAGCTATCTAGAAGTCATTACATTTATGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGGTCAGGAAGTAGCTATCTAGAAGTCATTACATTTATGAATT  600

seq1  CAGTCGGCACTCAACGAACACCCAACAAAAAGTAATCAGCTCTAAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGCACTCAACGAACACCCAACAAAAAGTAATCAGCTCTAAGAGTC  650

seq1  CAGATAAGTCTACACTGATGACAACATGCCTTTCACTGTGCTAAGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGTCTACACTGATGACAACATGCCTTTCACTGTGCTAAGAAAGG  700

seq1  GGAAGGTTCGAAGCATATGCCAGGCTTCTGAATTGTGACCAGGAAGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTCGAAGCATATGCCAGGCTTCTGAATTGTGACCAGGAAGGAGT  750

seq1  CTATCAGTTCAGCTGTTAGACAAAACACTACCTCGGGCTACCTAGAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTCAGCTGTTAGACAAAACACTACCTCGGGCTACCTAGAATGC  800

seq1  AACTATTCATCTAAACTTTAATTTTTATAATATGGATTCGAATTGATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCATCTAAACTTTAATTTTTATAATATGGATTCGAATTGATGAC  850

seq1  TTCCTGTACTAGAAAGAGAAAATTCAGCAGGGCATGCAAAATATAGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTACTAGAAAGAGAAAATTCAGCAGGGCATGCAAAATATAGATAG  900

seq1  GTAGGTAAGTAGGTAGGTAGGTA-GGTAGGTAGATAAGTAGGTAG  944
      ||||||||||||||||||||||| |||||||||            
seq2  GTAGGTAAGTAGGTAGGTAGGTAGGGTAGGTAG------------  933

seq1: chr8_34529519_34530708
seq2: B6Ng01-245F12.g_65_1237 (reverse)

seq1  CACTT-GCCCAG--CACATAAGAAGCCCTAGACTCAATCCTTAGAACCTC  47
      ||||| ||||||  ||||||||| |  ||||||||||| ||||| || ||
seq2  CACTTGGCCCAGCACACATAAGATG--CTAGACTCAAT-CTTAG-ACTTC  46

seq1  AAACAAAAATTGAATGAACCATCTGCCTTAAATTTTGAAAGAAATGAAGT  97
      |    ||||||| ||| || ||||||||||||  |||||||||||||  |
seq2  A---CAAAATTG-ATG-ACAATCTGCCTTAAA--TTGAAAGAAATGAGTT  89

seq1  CCCTCTAAGCAAAACCTTGATTCAAAGATATAAAAGGTATACATCTGT-C  146
      |||||| ||||||    ||||||||||| ||| || |||||||||||| |
seq2  CCCTCT-AGCAAA---CTGATTCAAAGA-ATATAAAGTATACATCTGTCC  134

seq1  AGTAGGTTTCAACAATATTTTGGAAAATTGTCTTTTCTGATCAT-AAAAT  195
      |||||||||||   ||||||||||||  |||||||||||||||| |||||
seq2  AGTAGGTTTCA--CATATTTTGGAAA--TGTCTTTTCTGATCATAAAAAT  180

seq1  AATTTCATTACAGATCTAGATCTTTTTGTTTCCTTCTATGTCCTTGCAGG  245
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATTTCATTACAGATCTAGATC-TTTTGTTTCCTTCTATGTCCTTGCAGG  229

seq1  GAAGCATTTTTTTTCTGTTCAATAAAATTTTTTTATTATTATTTTTTATT  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCA-TTTTTTTCTGTTCAATAAAATTTTTTTATTATTATTTTTTATT  278

seq1  AGGTATTTTCTTCATTTATGTATTGTCAAGCATTTTCTAAAGAAATTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTCTTCATTTATGTATTGTCAAGCATTTTCTAAAGAAATTCAG  328

seq1  ATATTCTCCATTAAAGAGAATCTTTTTATTAAAATTTTAACACTGAAAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCCATTAAAGAGAATCTTTTTATTAAAATTTTAACACTGAAAGC  378

seq1  CTAGGCTCACTCATCTTTGGGAATTAATTTGTGACATCAGAAGTTGTTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCACTCATCTTTGGGAATTAATTTGTGACATCAGAAGTTGTTTC  428

seq1  GAGTCTGAAAGTAGACAGTAATTTTAAGCATCAATGAGAACGAGCCTATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGAAAGTAGACAGTAATTTTAAGCATCAATGAGAACGAGCCTATG  478

seq1  GAGTTCACTTCAGACCTGTTCCGCTGTGTTCGTTCTCCGCTGAACCAGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCACTTCAGACCTGTTCCGCTGTGTTCGTTCTCCGCTGAACCAGAT  528

seq1  TCAGATTCACACTTAGAAATAACGCTGTCTTCCTTGTTCTCCGCTTTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCACACTTAGAAATAACGCTGTCTTCCTTGTTCTCCGCTTTCTC  578

seq1  CTTGGAAAGAGGAGGTGGGTGTAAAAAGCAATACAGTTCACTCAAAAACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAGAGGAGGTGGGTGTAAAAAGCAATACAGTTCACTCAAAAACT  628

seq1  GAGCAGTACTTCATCGGGCTGAATAGAGCGCACAGTGCAGTGGGCTCAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTACTTCATCGGGCTGAATAGAGCGCACAGTGCAGTGGGCTCAGC  678

seq1  GCTACACATAATTCATTTTGCAAATTGATGTCTTGTACTCTGTGAATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACATAATTCATTTTGCAAATTGATGTCTTGTACTCTGTGAATGGT  728

seq1  AGACAAAGCTTACACTTTTTAACAAAACAGAATGTTTGATGTCGTAAAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGCTTACACTTTTTAACAAAACAGAATGTTTGATGTCGTAAAAG  778

seq1  ACCTAACAAAAGACATGCAATGAAAAATTACTTCTAAGGATGGGCTCCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAAAAGACATGCAATGAAAAATTACTTCTAAGGATGGGCTCCCA  828

seq1  GCTTTGTGAGTTTAGAGACTCAGTTTTGTTAGTTCATTCTGAATGAATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGAGTTTAGAGACTCAGTTTTGTTAGTTCATTCTGAATGAATTC  878

seq1  ATAAGAAAGTCCCTCAAAACAAGGTCAGGAAGAAACTATTTTTCAGTGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGTCCCTCAAAACAAGGTCAGGAAGAAACTATTTTTCAGTGCC  928

seq1  AGATATCCAGTGGAGAAATGAAATAATTTACAACCAAAAAAAAAGAGTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCCAGTGGAGAAATGAAATAATTTACAACCAAAAAAAAAGAGTGT  978

seq1  TACTCCTGGGGAATTGGAAGAAACCGTGTCTAAGACACAGACTTTGAGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGGGGAATTGGAAGAAACCGTGTCTAAGACACAGACTTTGAGTT  1028

seq1  TTGCTTTCCTTTTTGTAAATTATTTTATAAGCCTGATTATTTCATTAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCTTTTTGTAAATTATTTTATAAGCCTGATTATTTCATTAATT  1078

seq1  TTAGAAATTACTTTTTAAAGGAAAGGTATAAGTGCTAGAGAGATTAGATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTACTTTTTAAAGGAAAGGTATAAGTGCTAGAGAGATTAGATT  1128

seq1  ACCTTAGTCAATTGGCCACCATTTTCTTTCTTCAGTGGGGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTCAATTGGCCACCATTTTCTTTCTTCAGTGGGGAATTC  1173