BAC Information

Click to search

BAC

Clone NameB6Ng01-245J09
Chromosome8 (Build37)
Map Location 71,640,706 - 71,798,061
singlet/doubletdoublet
Overlap geneLzts1, EG665540, D10627, LOC665553, D130040H23Rik
Upstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2
Downstream geneLOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245J09.bB6Ng01-245J09.g
ACCGA054431GA054432
length1,1221,172
definitionB6Ng01-245J09.b B6Ng01-245J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,796,943 - 71,798,061)(71,640,706 - 71,641,874)
sequence
gaattctggaaggaacccacaaactacctttcactggtgtttctgattat
taggacttctcagagtctctcattagctaggtcttcccagcagggtatag
gacaatagcagctcccctacagggtgagcagaaatcaacagactcaaata
ggacaggccttccacaatagaggcagacaggtccctagtctggaaaactt
gtattttagtagaaattcttccagtctcccagagcacttcctgtctctct
tccatgacatgaggtccctttgatactcaatgtctagtggagccatttct
tgatctcacagctgggaagtcctgcagccaaatttaggttaaattcaacc
agtaacaacaattaaagcaaaaagaggccatttcatagaatgcataaagg
agtatataggagaaaggaaaaataatttgtaaatgatgtaattacaattt
caaaaattatattttaacgttgaaacccagctttatggccccacctgctc
aagggactatcgatttgtagaagaccacacctaggattactcacaccttt
tctctcagactctccattttcatccaggaaaagcaacactcctgttagac
atggccatgtcagtttgaccagatcttctgtactggttaaactagtgtaa
ctacagtaatttggttcctagaaataaattcagttctttattcagattct
tgattgcatgtcctgtggacccaagaaacaggacattgattgatcaccta
aaattgactcccagagtactcattggtaatccctactgttgccagagcaa
aaaagctctcaccacccttcctgaccctgcctttctgtgctgtgactaca
gcagtttcaaagttgggtcagtgaactcgggttctaacacaagttccctc
ttcatttgtaatttcctaatagaagccaaaggaagggcagaggacaatca
ttcattggtctctttttcccttttcctggaaggagttgcagactgccctt
tcagcactaaggcagcagaggcaggattaggtgtggaaagccaatgataa
tgcagccctggctatgggagacatgctgtaacagaaaatcaatacaatta
atagcattgagaaaaaccgaat
gaattctgtcagaaactctaaagataaagttgcactgagtcatatttgac
agatgtgaggagtcatatctaagaagagatttcccagggtggtggcacat
aatcttaggacctgagaggcaggtacaggcagacctgtgagttctagaca
agctccatctacaaagctagttctaggagagccgcggctgctggtaaatg
catatacttagagatcagtgtcctgtgtgggtcagtcagtggcgtaatta
ggcaacagctcatctaaccaaaatgaacatgtgtctgacagttcttgtgg
ctaaggatacatgtcaatgctagaaacttgcctcgttagtgtatgtgaga
ctctggttctcaacctcaaagcagcagcaatagaacggttcttttgtttt
tcatttcataaacaattgcaagcatagttctgaacacccattttcttagc
actcaggaggcttaaagtcccacggaagagaagaaaggtaactaggagaa
aacatttctttagcaatactacagaggtgctggccattaaatccagggta
ttaactagcactgagcctcaaccccaggaccgtagaacagctttaaaagc
caacactaatgagtctactcctctgcctcccatttggtcaggaggatcag
caaacactgttcttcaatgtgctctgtgtgcttccccgtccctgtcccat
gagagacacttgtctaaagtgacagaagctgacaggaggatggcaatacc
aggagacaagtctggttccaaagggactgggtacgaggtgcagttacagc
agtgaagaggtagctgacatggggaagactttggccagcaatttcctttc
aggtccatttcataaaagtaacaggttccagctagcagtggcctgtcttt
gtgtggccagcgtgtgagtttcacttaggagcagctcattcttctgcagt
aagtagtttgggacctagggctagggcagcatttgggagcacaggacatg
attgcagattaactgccttcgtttgactttcactacaaacattcaaaact
ggtttatgaccctctgaagaagcctttcagcattctctttgaggaaatat
acaagtaccatgcatttggctaggtactctgaacctgtattgcacgtata
agcacggaaggcatttattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_71796943_71798061
seq2: B6Ng01-245J09.b_48_1169 (reverse)

seq1  ATTCTGTTTTTCTCAAATGCTATTTA-TGTATTGA-TTTCTGTTTACAGC  48
      |||| ||||||||| ||||||||| | |||||||| |||||| |||||||
seq2  ATTCGGTTTTTCTC-AATGCTATTAATTGTATTGATTTTCTG-TTACAGC  48

seq1  AATGTCTCCCATAGCCCAGGCTTGCAATTTATCATT-GCTTTCCACACCT  97
       ||||||||||||| |||||  ||||  |||||||| |||||||||||||
seq2  -ATGTCTCCCATAG-CCAGGGCTGCA--TTATCATTGGCTTTCCACACCT  94

seq1  AATCCTGCCTCTGCTGCC-TAGTGCTTGAAAGGCAGTCCTGCAACTCCTT  146
      |||||||||||||||||| |||||||  || |||||| ||||||||||||
seq2  AATCCTGCCTCTGCTGCCTTAGTGCTGAAAGGGCAGT-CTGCAACTCCTT  143

seq1  CCAGGAAAAGGG-AAAAGAGACCAATGAATGATTGTCCTCTGCCCT--CC  193
      |||||||||||| |||||||||||||||||||||||||||||||||  | 
seq2  CCAGGAAAAGGGAAAAAGAGACCAATGAATGATTGTCCTCTGCCCTTCCT  193

seq1  TTGGCTTCTATTAGGAAATTACAAATGAAGA-GGAACTTGTGTTAGAA-C  241
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  TTGGCTTCTATTAGGAAATTACAAATGAAGAGGGAACTTGTGTTAGAACC  243

seq1  CGAGTTCACTGA-CCAACTTTGAAACTGCTGTAGTCACAGCACAGAAAGG  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGAGTTCACTGACCCAACTTTGAAACTGCTGTAGTCACAGCACAGAAAGG  293

seq1  CAGGGTCAGGAAGGGTGGTGAGAGCTTTTTTGCTCTGGCAACAGTAGGGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAGGAAGGGTGGTGAGAGCTTTTTTGCTCTGGCAACAGTAGGGA  343

seq1  TTACCAATGAGTACTCTGGGAGTCAATTTTAGGTGATCAATCAATGTCCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATGAGTACTCTGGGAGTCAATTTTAGGTGATCAATCAATGTCCT  393

seq1  GTTTCTTGGGTCCACAGGACATGCAATCAAGAATCTGAATAAAGAACTGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGGGTCCACAGGACATGCAATCAAGAATCTGAATAAAGAACTGA  443

seq1  ATTTATTTCTAGGAACCAAATTACTGTAGTTACACTAGTTTAACCAGTAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCTAGGAACCAAATTACTGTAGTTACACTAGTTTAACCAGTAC  493

seq1  AGAAGATCTGGTCAAACTGACATGGCCATGTCTAACAGGAGTGTTGCTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCTGGTCAAACTGACATGGCCATGTCTAACAGGAGTGTTGCTTT  543

seq1  TCCTGGATGAAAATGGAGAGTCTGAGAGAAAAGGTGTGAGTAATCCTAGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGAAAATGGAGAGTCTGAGAGAAAAGGTGTGAGTAATCCTAGG  593

seq1  TGTGGTCTTCTACAAATCGATAGTCCCTTGAGCAGGTGGGGCCATAAAGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTTCTACAAATCGATAGTCCCTTGAGCAGGTGGGGCCATAAAGC  643

seq1  TGGGTTTCAACGTTAAAATATAATTTTTGAAATTGTAATTACATCATTTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCAACGTTAAAATATAATTTTTGAAATTGTAATTACATCATTTA  693

seq1  CAAATTATTTTTCCTTTCTCCTATATACTCCTTTATGCATTCTATGAAAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATTTTTCCTTTCTCCTATATACTCCTTTATGCATTCTATGAAAT  743

seq1  GGCCTCTTTTTGCTTTAATTGTTGTTACTGGTTGAATTTAACCTAAATTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTTTTGCTTTAATTGTTGTTACTGGTTGAATTTAACCTAAATTT  793

seq1  GGCTGCAGGACTTCCCAGCTGTGAGATCAAGAAATGGCTCCACTAGACAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGGACTTCCCAGCTGTGAGATCAAGAAATGGCTCCACTAGACAT  843

seq1  TGAGTATCAAAGGGACCTCATGTCATGGAAGAGAGACAGGAAGTGCTCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCAAAGGGACCTCATGTCATGGAAGAGAGACAGGAAGTGCTCTG  893

seq1  GGAGACTGGAAGAATTTCTACTAAAATACAAGTTTTCCAGACTAGGGACC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGGAAGAATTTCTACTAAAATACAAGTTTTCCAGACTAGGGACC  943

seq1  TGTCTGCCTCTATTGTGGAAGGCCTGTCCTATTTGAGTCTGTTGATTTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTCTATTGTGGAAGGCCTGTCCTATTTGAGTCTGTTGATTTCT  993

seq1  GCTCACCCTGTAGGGGAGCTGCTATTGTCCTATACCCTGCTGGGAAGACC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCCTGTAGGGGAGCTGCTATTGTCCTATACCCTGCTGGGAAGACC  1043

seq1  TAGCTAATGAGAGACTCTGAGAAGTCCTAATAATCAGAAACACCAGTGAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATGAGAGACTCTGAGAAGTCCTAATAATCAGAAACACCAGTGAA  1093

seq1  AGGTAGTTTGTGGGTTCCTTCCAGAATTC  1119
      |||||||||||||||||||||||||||||
seq2  AGGTAGTTTGTGGGTTCCTTCCAGAATTC  1122

seq1: chr8_71640706_71641874
seq2: B6Ng01-245J09.g_68_1239

seq1  GAATTCTGTCAGAAACTCTAAAGATAAAGTTGCACTGAGTCATATTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAGAAACTCTAAAGATAAAGTTGCACTGAGTCATATTTGAC  50

seq1  AGATGTGAGGAGTCATATCTAAGAAGAGATTTCCCAGGGTGGTGGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAGGAGTCATATCTAAGAAGAGATTTCCCAGGGTGGTGGCACAT  100

seq1  AATCTTAGGACCTGAGAGGCAGGTACAGGCAGACCTGTGAGTTCTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGGACCTGAGAGGCAGGTACAGGCAGACCTGTGAGTTCTAGACA  150

seq1  AGCTCCATCTACAAAGCTAGTTCTAGGAGAGCCGCGGCTGCTGGTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATCTACAAAGCTAGTTCTAGGAGAGCCGCGGCTGCTGGTAAATG  200

seq1  CATATACTTAGAGATCAGTGTCCTGTGTGGGTCAGTCAGTGGCGTAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTAGAGATCAGTGTCCTGTGTGGGTCAGTCAGTGGCGTAATTA  250

seq1  GGCAACAGCTCATCTAACCAAAATGAACATGTGTCTGACAGTTCTTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGCTCATCTAACCAAAATGAACATGTGTCTGACAGTTCTTGTGG  300

seq1  CTAAGGATACATGTCAATGCTAGAAACTTGCCTCGTTAGTGTATGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATACATGTCAATGCTAGAAACTTGCCTCGTTAGTGTATGTGAGA  350

seq1  CTCTGGTTCTCAACCTCAAAGCAGCAGCAATAGAACGGTTCTTTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTCTCAACCTCAAAGCAGCAGCAATAGAACGGTTCTTTTGTTTT  400

seq1  TCATTTCATAAACAATTGCAAGCATAGTTCTGAACACCCATTTTCTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATAAACAATTGCAAGCATAGTTCTGAACACCCATTTTCTTAGC  450

seq1  ACTCAGGAGGCTTAAAGTCCCACGGAAGAGAAGAAAGGTAACTAGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCTTAAAGTCCCACGGAAGAGAAGAAAGGTAACTAGGAGAA  500

seq1  AACATTTCTTTAGCAATACTACAGAGGTGCTGGCCATTAAATCCAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTTTAGCAATACTACAGAGGTGCTGGCCATTAAATCCAGGGTA  550

seq1  TTAACTAGCACTGAGCCTCAACCCCAGGACCGTAGAACAGCTTTAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGCACTGAGCCTCAACCCCAGGACCGTAGAACAGCTTTAAAAGC  600

seq1  CAACACTAATGAGTCTACTCCTCTGCCTCCCATTTGGTCAGGAGGATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAATGAGTCTACTCCTCTGCCTCCCATTTGGTCAGGAGGATCAG  650

seq1  CAAACACTGTTCTTCAATGTGCTCTGTGTGCTTCCCCGTCCCTGTCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTGTTCTTCAATGTGCTCTGTGTGCTTCCCCGTCCCTGTCCCAT  700

seq1  GAGAGACACTTGTCTAAAGTGACAGAAGCTGACAGGAGGATGGCAATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACACTTGTCTAAAGTGACAGAAGCTGACAGGAGGATGGCAATACC  750

seq1  AGGAGACAAGTCTGGTTCCAAAGGGACTGGGTACGAGGTGCAGTTACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAAGTCTGGTTCCAAAGGGACTGGGTACGAGGTGCAGTTACAGC  800

seq1  AGTGAAGAGGTAGCTGACAT-GGGAAGACTTTGGCCAGCAATTTCCTTTC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTGAAGAGGTAGCTGACATGGGGAAGACTTTGGCCAGCAATTTCCTTTC  850

seq1  AGGTCCA-TTCATAAAAGTAACAGGTTCCAGCTAGCAGTGGCCTGTC-TT  897
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGTCCATTTCATAAAAGTAACAGGTTCCAGCTAGCAGTGGCCTGTCTTT  900

seq1  GTGTGGCCAGCGTGTGAG-TTCACTTAGGAGCAGCTCATTCTTCTGCAGT  946
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTGGCCAGCGTGTGAGTTTCACTTAGGAGCAGCTCATTCTTCTGCAGT  950

seq1  AAGTAGTTT-GGACCTA-GGCTAGGCCAGCATTTGGGAGCACAGGACATG  994
      ||||||||| ||||||| ||||||| ||||||||||||||||||||||||
seq2  AAGTAGTTTGGGACCTAGGGCTAGGGCAGCATTTGGGAGCACAGGACATG  1000

seq1  ATTGCAGATTTACTGCC-TCGTTTGAC-TTCACTACAAACATTCAAAAC-  1041
      |||||||||| |||||| ||||||||| ||||||||||||||||||||| 
seq2  ATTGCAGATTAACTGCCTTCGTTTGACTTTCACTACAAACATTCAAAACT  1050

seq1  GGGTTATGACCCTCTGAAGAGCCCTTTCCAGCATTCTCTTTGAGGAAAAT  1091
      || |||||||||||||||||  ||||| ||||||||||||||||| ||||
seq2  GGTTTATGACCCTCTGAAGAAGCCTTT-CAGCATTCTCTTTGAGG-AAAT  1098

seq1  ATACCAGTTACCCATGCATTTTGCTAGGTACTCTGAACTGTGAAATGCAC  1141
      |||| |||   |||||||||| ||||||||||||||||  || | |||||
seq2  ATACAAGT--ACCATGCATTTGGCTAGGTACTCTGAAC-CTGTATTGCAC  1145

seq1  GTATTAAGCCACGAAGGCATTTAATAAA  1169
      ||| |||||   ||||||||||| ||||
seq2  GTA-TAAGCACGGAAGGCATTTATTAAA  1172