BAC Information

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BAC

Clone NameB6Ng01-245N18
Chromosome8 (Build37)
Map Location 65,315,782 - 65,456,070
singlet/doubletdoublet
Overlap geneSpock3
Upstream genePalld, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245N18.bB6Ng01-245N18.g
ACCGA054631GA054632
length1,1251,148
definitionB6Ng01-245N18.b B6Ng01-245N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,315,782 - 65,316,906)(65,454,919 - 65,456,070)
sequence
gaattcagactaacctggagtatatgagtttctgacaaaagaaaaaaaaa
aacacaaagaaacaaacaaaatgcaaaaataaaacaaagcaaaatgaaag
aaacaaaacaagatgttgaaagtagaagatgaagattttaaggatgccat
aataaaaaatttcaaggtacaactaaaggtcaaaggaatgaaaatagaga
aagcctcagaagaaatgacatctcaccatataaatagaattgatacaaaa
caaagcaaaatgccatgtttagaaatgaaaactccacacggatgataaaa
atccaaataaataacttcagaaggagagttacagagtaaggacagcatcc
ctgaactgaggatccatcaatagtcatcaatctaaacagcagacaggaac
ctgaccaagtaaaggagacccttaaaaccttaatatatgatttattcaag
agaacagacatgacttttcatttctgtcaaagctctagagtctatatgaa
gacagaggaaatggagtgctcatataggtggtcctggttaatcccaatac
atcacaacgcaaaacaaataatcacaaatatgatttactggggactgaga
ggtgagagtagttgctgtggatttcatacatgtgtgaaactatctaaaca
caaatttaattaatataacaatgtaacaatggtgagtaaaaatatggaaa
aagtcattattagagttagagcatttctttctcagctatattatattatt
ttattttattgaatattttatttatttacatttcaaatgttatctccttt
cctttttttccctcctgaaatcctctatcccgttcttccccctgcttcta
tgatggtactcccccacctccccacctccccatctgagcattcttctaca
ctggagcattgagccatcccaggaccaaggtcctctcctcccattgatgt
ccaacaaggccatcctttagctattatatgtggctggagccatgggttcc
ctccatgtgtacctctttagttgatgcttttagccttggggacctctggg
tggggtctggtggtaatattatgtcatctatggggctgcaaaccctttca
atacttcagtccctttatatacacc

gaattctttccaaatgtaagtttttagaaaacgttgtctccttctgtttg
aacaaatcattctaatttatttaaaaactagatgttatatatttcagacc
atagtcttaatttaaatttggtttaattttcaagcaatgaatacatttca
ttatttgtaataatgaatggccatattattcatatgattattttattaca
tccttttgtgcttatcatatattgagctatatattttaaaagatagctat
tacaatgacagaaaaatgatttatatgtattatgtagtcagtccaaaaga
gtatgaaataggaatctatgtggcttaatgcagtcctttccaatatccag
taaagatatattattattattattatcactttgacatcatcagaaaatac
gggcataagataacctacagtgttctttaatcacaagatgtagaatcagc
atccaaacagaaattctggctgcaagatgacagaacaagtccataactat
tctttatttatagcatttaaacctaaattcataatcttcaacagcaagat
tgtggtgtattgaactaaataaatggcatgtccattatgttgtgaactga
aatacagtcccttgctgttactgtgtgctggaacattttctagttttact
ttggttgaatgaattcagcccagcagtcaatcagatcaataacttgaagc
tttgattttcctaagatgttaataataaagagcttaaaaggaggactttg
agaaacaggtgccagcatctctaggagcctctgactaatagaatccaaga
atccttgaataacagatccaaccctgtttgatcagtatcttagaaaacag
gacacagaactctgccttttcttataaactatctcatgtttctttgtaaa
ctttacaaaagatgtttttatgtttttatcttattacagtactatttgta
gttcagaagctgaagaaatgtgacaacttcaatatgtaatattttccagt
aacggcatcatgcttctgatgcttcctgtcaattagatgagaatagatca
ctttgtggagatcagaacaatctacttctgcctatctggatcaatacctg
caaatcaattttctccaataaaatgcaatatttggctcacaataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65315782_65316906
seq2: B6Ng01-245N18.b_50_1174

seq1  GAATTCAGACTAACCTGGAGTATATGAGTTTCTGACAAAAGAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTAACCTGGAGTATATGAGTTTCTGACAAAAGAAAAAAAAA  50

seq1  AACACAAAGAAACAAACAAAATGCAAAAATAAAACAAAGCAAAATGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGAAACAAACAAAATGCAAAAATAAAACAAAGCAAAATGAAAG  100

seq1  AAACAAAACAAGATGTTGAAAGTAGAAGATGAAGATTTTAAGGATGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAGATGTTGAAAGTAGAAGATGAAGATTTTAAGGATGCCAT  150

seq1  AATAAAAAATTTCAAGGTACAACTAAAGGTCAAAGGAATGAAAATAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATTTCAAGGTACAACTAAAGGTCAAAGGAATGAAAATAGAGA  200

seq1  AAGCCTCAGAAGAAATGACATCTCACCATATAAATAGAATTGATACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCAGAAGAAATGACATCTCACCATATAAATAGAATTGATACAAAA  250

seq1  CAAAGCAAAATGCCATGTTTAGAAATGAAAACTCCACACGGATGATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAATGCCATGTTTAGAAATGAAAACTCCACACGGATGATAAAA  300

seq1  ATCCAAATAAATAACTTCAGAAGGAGAGTTACAGAGTAAGGACAGCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATAAATAACTTCAGAAGGAGAGTTACAGAGTAAGGACAGCATCC  350

seq1  CTGAACTGAGGATCCATCAATAGTCATCAATCTAAACAGCAGACAGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGAGGATCCATCAATAGTCATCAATCTAAACAGCAGACAGGAAC  400

seq1  CTGACCAAGTAAAGGAGACCCTTAAAACCTTAATATATGATTTATTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAAGTAAAGGAGACCCTTAAAACCTTAATATATGATTTATTCAAG  450

seq1  AGAACAGACATGACTTTTCATTTCTGTCAAAGCTCTAGAGTCTATATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGACATGACTTTTCATTTCTGTCAAAGCTCTAGAGTCTATATGAA  500

seq1  GACAGAGGAAATGGAGTGCTCATATAGGTGGTCCTGGTTAATCCCAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAAATGGAGTGCTCATATAGGTGGTCCTGGTTAATCCCAATAC  550

seq1  ATCACAACGCAAAACAAATAATCACAAATATGATTTACTGGGGACTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACGCAAAACAAATAATCACAAATATGATTTACTGGGGACTGAGA  600

seq1  GGTGAGAGTAGTTGCTGTGGATTTCATACATGTGTGAAACTATCTAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGTAGTTGCTGTGGATTTCATACATGTGTGAAACTATCTAAACA  650

seq1  CAAATTTAATTAATATAACAATGTAACAATGGTGAGTAAAAATATGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAATTAATATAACAATGTAACAATGGTGAGTAAAAATATGGAAA  700

seq1  AAGTCATTATTAGAGTTAGAGCATTTCTTTCTCAGCTATATTATATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTATTAGAGTTAGAGCATTTCTTTCTCAGCTATATTATATTATT  750

seq1  TTATTTTATTGAATATTTTATTTATTTACATTTCAAATGTTATCTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTGAATATTTTATTTATTTACATTTCAAATGTTATCTCCTTT  800

seq1  CCTTTTTTTCCCTCCTGAAATCCTCTATCCCGTTCTTCCCCCTGCTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTCCCTCCTGAAATCCTCTATCCCGTTCTTCCCCCTGCTTCTA  850

seq1  TGATGGTACTCCCCCACCTCCCCACCTCCCCATCTGAGCATTCTTCTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTACTCCCCCACCTCCCCACCTCCCCATCTGAGCATTCTTCTACA  900

seq1  CTGGAGCATTGAGCCATCCCAGGACCAAGGTCCTCTCCTCCCATTGATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCATTGAGCCATCCCAGGACCAAGGTCCTCTCCTCCCATTGATGT  950

seq1  CCAACAAGGCCATCC-TTAGCTA-TATATGTGGCTGGAGCCATGGG-TCC  997
      ||||||||||||||| ||||||| |||||||||||||||||||||| |||
seq2  CCAACAAGGCCATCCTTTAGCTATTATATGTGGCTGGAGCCATGGGTTCC  1000

seq1  CTCCATGTGTA-CTCTTTAGTTGATGCTTTTTAGGCCTTGGGAACTCTGG  1046
      ||||||||||| ||||||||||||||| |||||| | | |||| ||||||
seq2  CTCCATGTGTACCTCTTTAGTTGATGC-TTTTAGCCTTGGGGACCTCTGG  1049

seq1  --TGGGTCTGGTTGGTTAATATTATTGTTCATCCTAT-GGGCTGCAAACC  1093
         |||||||||  | |||||||||   |||| |||| ||||||||||||
seq2  GTGGGGTCTGGT--GGTAATATTAT--GTCAT-CTATGGGGCTGCAAACC  1094

seq1  CTTTCAATACCTTCAGT-CCTTTATATTACACC  1125
      ||||||||| ||||||| |||||||| ||||||
seq2  CTTTCAATA-CTTCAGTCCCTTTATA-TACACC  1125


seq1: chr8_65454919_65456070
seq2: B6Ng01-245N18.g_68_1215 (reverse)

seq1  TTATTA-TGTGAG-CAAATATTTGCATTTTATGTGGAGAAAAATGATTTG  48
      |||||| |||||| |||||| ||||||||||| ||||||||| |||||||
seq2  TTATTATTGTGAGCCAAATA-TTGCATTTTAT-TGGAGAAAATTGATTTG  48

seq1  CAGTTATTGATCCCAGATAGGCAG-AGTAGAATTGTTCTGAATTCTCACA  97
      ||| ||||||| |||||||||||| ||||| ||||||||||  || ||||
seq2  CAGGTATTGAT-CCAGATAGGCAGAAGTAG-ATTGTTCTGATCTC-CACA  95

seq1  AAGTTGATTCTA-TCTCATCTAAATGGACAGGAAGCATCAGAAGCATGGT  146
      ||| ||| |||| |||||||| ||| |||||||||||||||||||||| |
seq2  AAG-TGA-TCTATTCTCATCT-AATTGACAGGAAGCATCAGAAGCATGAT  142

seq1  GCCGTTACTGG-AAATATTACATATTGAAGTTGTCACATTTCTTCAGCTT  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTACTGGAAAATATTACATATTGAAGTTGTCACATTTCTTCAGCTT  192

seq1  CCTGAACTACAAATAGTACTGTAATAAGATAAAAACATAAAAACATCTTT  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGAACTACAAATAGTACTGTAATAAGATAAAAACATAAAAACATCTTT  241

seq1  TGTAAAGTTTACAAAGAAACATGAGATAGTTTATAAGAAAAGGCAGAGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTTTACAAAGAAACATGAGATAGTTTATAAGAAAAGGCAGAGTT  291

seq1  CTGTGTCCTGTTTTCTAAGATACTGATCAAACAGGGTTGGATCTGTTATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTGTTTTCTAAGATACTGATCAAACAGGGTTGGATCTGTTATT  341

seq1  CAAGGATTCTTGGATTCTATTAGTCAGAGGCTCCTAGAGATGCTGGCACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTCTTGGATTCTATTAGTCAGAGGCTCCTAGAGATGCTGGCACC  391

seq1  TGTTTCTCAAAGTCCTCCTTTTAAGCTCTTTATTATTAACATCTTAGGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAAAGTCCTCCTTTTAAGCTCTTTATTATTAACATCTTAGGAA  441

seq1  AATCAAAGCTTCAAGTTATTGATCTGATTGACTGCTGGGCTGAATTCATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGCTTCAAGTTATTGATCTGATTGACTGCTGGGCTGAATTCATT  491

seq1  CAACCAAAGTAAAACTAGAAAATGTTCCAGCACACAGTAACAGCAAGGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAGTAAAACTAGAAAATGTTCCAGCACACAGTAACAGCAAGGGA  541

seq1  CTGTATTTCAGTTCACAACATAATGGACATGCCATTTATTTAGTTCAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCAGTTCACAACATAATGGACATGCCATTTATTTAGTTCAATA  591

seq1  CACCACAATCTTGCTGTTGAAGATTATGAATTTAGGTTTAAATGCTATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAATCTTGCTGTTGAAGATTATGAATTTAGGTTTAAATGCTATAA  641

seq1  ATAAAGAATAGTTATGGACTTGTTCTGTCATCTTGCAGCCAGAATTTCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAATAGTTATGGACTTGTTCTGTCATCTTGCAGCCAGAATTTCTG  691

seq1  TTTGGATGCTGATTCTACATCTTGTGATTAAAGAACACTGTAGGTTATCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGCTGATTCTACATCTTGTGATTAAAGAACACTGTAGGTTATCT  741

seq1  TATGCCCGTATTTTCTGATGATGTCAAAGTGATAATAATAATAATAATAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCGTATTTTCTGATGATGTCAAAGTGATAATAATAATAATAATAT  791

seq1  ATCTTTACTGGATATTGGAAAGGACTGCATTAAGCCACATAGATTCCTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTGGATATTGGAAAGGACTGCATTAAGCCACATAGATTCCTAT  841

seq1  TTCATACTCTTTTGGACTGACTACATAATACATATAAATCATTTTTCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCTTTTGGACTGACTACATAATACATATAAATCATTTTTCTGT  891

seq1  CATTGTAATAGCTATCTTTTAAAATATATAGCTCAATATATGATAAGCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAATAGCTATCTTTTAAAATATATAGCTCAATATATGATAAGCAC  941

seq1  AAAAGGATGTAATAAAATAATCATATGAATAATATGGCCATTCATTATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATGTAATAAAATAATCATATGAATAATATGGCCATTCATTATTA  991

seq1  CAAATAATGAAATGTATTCATTGCTTGAAAATTAAACCAAATTTAAATTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAAATGTATTCATTGCTTGAAAATTAAACCAAATTTAAATTA  1041

seq1  AGACTATGGTCTGAAATATATAACATCTAGTTTTTAAATAAATTAGAATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGTCTGAAATATATAACATCTAGTTTTTAAATAAATTAGAATG  1091

seq1  ATTTGTTCAAACAGAAGGAGACAACGTTTTCTAAAAACTTACATTTGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCAAACAGAAGGAGACAACGTTTTCTAAAAACTTACATTTGGAA  1141

seq1  AGAATTC  1152
      |||||||
seq2  AGAATTC  1148


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