BAC Information

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BAC

Clone NameB6Ng01-246N08
Chromosome8 (Build37)
Map Location 38,314,214 - 38,484,185
singlet/doubletdoublet
Overlap geneLOC621149
Upstream geneEG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
Downstream geneSgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246N08.bB6Ng01-246N08.g
ACCGA055336GA055337
length9501,103
definitionB6Ng01-246N08.b B6Ng01-246N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,314,214 - 38,315,159)(38,483,093 - 38,484,185)
sequence
gaattccaacttacagtctattaaaattcagccctaaaatgacaaagcct
tcttaaagccttatttttaaaatcccctattcttgctcagattaagaatt
gccaaaataccttctgaactaagttgcgttgtgctgagaacacctaagca
ctaaactctcttgagagacttctgttgctaagaagactgcagcttctgga
gtcaggggtgcagacccttccatagttcccagacagtgtgacacagcaca
gcctccttaatgacacgttgccatgtaacgcacctgtaacttatcagccc
atgttcattacgtaactttatactgtacgtcacagtgatgagtgtgacag
ctcagctctttgatttcatagtgagttttctaaaagaccagccgactagc
ttttgcagactttgaacagaactctggttcgtgtgttgcctctcatgaag
tattctgttcctagttgtgggtgtgctgggtggagtgtgaaacacgacac
gatcaaaggagacagacagacagtattttgactaatatgaagtagagatt
actttacactacattgtacatggagtaattcaactgaaataaaagtgtca
tgggggaaaaatactactaatacgaggtgtctcatataaacaaataaaga
acagaattcagaaattcatatcagaaaccaagtagatattagaggtcctt
aaactttagaatattatttcctttatttggatttattgaatttgtgccta
tggagtttatctgatgtagagagatagtatcattatttgttacaccgggc
actgacctattaactaggagaggttatttagctatctaagacagcaaagc
gatgaatggctacacaataacaatacagtgaaagctaaaaatacacttta
tggcattattttacctaggataaaggactgtttacagctctaagggaaaa


gaattcaaggccacaggatagaacttgggtcctctgaaggaagagcaagt
actttgaacatggtgacccatttctatattttctcttgacttaagaaatt
tctgtccctggttgtttagtttcttggtgtggacagaacctgcctatggg
atcaaggaagtggagtttctttaccccaggaaagactggaagcagagtga
agtggtaccaggaaggatccagacaagttctgtccaaggatggcacagtt
ccattgacttactttctctaacctgctccctctggtacagttccgcaggc
tctctcaaggatctattcaaagtgtgaatccataaatggattaaactatg
cattaataaataccttgtttatctaattatatctggaaatgtcttctcta
tacatcaagaggtgtgcgttacttatttcctaggatttcatcctaatcag
gttaacagtcaagactaaccaagacacagagtagttctcccatgaatgct
cctgaattatattcattcacattattcgcattttcataagaatgactatg
tcattggaaaatgtgggaacattctagaaattaggagataaaagttgaaa
ttacagagaggtcatctttcaaaatggctttctatggcataaaatttgaa
tcatcttagctattccttcaaatattaccacaatagagactcttttaaat
aattgttggatgccttattattttcatatatttaagaagctctcaaggcc
tagaaactcagtctttgtacaggttatatttttaaaaaacgactggattg
aaaaataatcttcactatttcactgcaatgaacataaaaaattttccatt
tttccaactcaaaattattttgttagagccaggcggtggtggcgcacgcc
ctttaatcccagcacttgggaaggcagaggcaggtggatctgtgagtttg
agccagcctggttctacagagtgaagtttcaggatagacagggctataca
gagaaaccctgtcttcaaaaaacaaaaattagagcaaatatctcactcag
caatagaataagagcccagcttcatatgaatcattatctatctcaccaaa
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38314214_38315159
seq2: B6Ng01-246N08.b_48_997

seq1  GAATTCCAACTTACAGTCTATTAAAATTCAGCCCTAAAATGACAAAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTTACAGTCTATTAAAATTCAGCCCTAAAATGACAAAGCCT  50

seq1  TCTTAAAGCCTTATTTTTAAAATCCCCTATTCTTGCTCAGATTAAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGCCTTATTTTTAAAATCCCCTATTCTTGCTCAGATTAAGAATT  100

seq1  GCCAAAATACCTTCTGAACTAAGTTGCGTTGTGCTGAGAACACCTAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATACCTTCTGAACTAAGTTGCGTTGTGCTGAGAACACCTAAGCA  150

seq1  CTAAACTCTCTTGAGAGACTTCTGTTGCTAAGAAGACTGCAGCTTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCTCTTGAGAGACTTCTGTTGCTAAGAAGACTGCAGCTTCTGGA  200

seq1  GTCAGGGGTGCAGACCCTTCCATAGTTCCCAGACAGTGTGACACAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGTGCAGACCCTTCCATAGTTCCCAGACAGTGTGACACAGCACA  250

seq1  GCCTCCTTAATGACACGTTGCCATGTAACGCACCTGTAACTTATCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTAATGACACGTTGCCATGTAACGCACCTGTAACTTATCAGCCC  300

seq1  ATGTTCATTACGTAACTTTATACTGTACGTCACAGTGATGAGTGTGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTACGTAACTTTATACTGTACGTCACAGTGATGAGTGTGACAG  350

seq1  CTCAGCTCTTTGATTTCATAGTGAGTTTTCTAAAAGACCAGCCGACTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTTTGATTTCATAGTGAGTTTTCTAAAAGACCAGCCGACTAGC  400

seq1  TTTTGCAGACTTTGAACAGAACTCTGGTTCGTGTGTTGCCTCTCATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGACTTTGAACAGAACTCTGGTTCGTGTGTTGCCTCTCATGAAG  450

seq1  TATTCTGTTCCTAGTTGTGGGTGTGCTGGGTGGAGTGTGAAACACGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTCCTAGTTGTGGGTGTGCTGGGTGGAGTGTGAAACACGACAC  500

seq1  GATCAAAGGAGACAGACAGACAGTATTTTGACTAATATGAAGTAGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGGAGACAGACAGACAGTATTTTGACTAATATGAAGTAGAGATT  550

seq1  ACTTTACACTACATTGTACATGGAGTAATTCAACTG-AATAAAAGTGTCA  599
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTTACACTACATTGTACATGGAGTAATTCAACTGAAATAAAAGTGTCA  600

seq1  TGGGGGAAAAATACTACTAATACGAGGTGTCTCATATAAACAAATAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAAAATACTACTAATACGAGGTGTCTCATATAAACAAATAAAGA  650

seq1  ACAGAATTCAGAAATTCATATCAGAAACCAAGTAGATATTAGAGGTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCAGAAATTCATATCAGAAACCAAGTAGATATTAGAGGTCCTT  700

seq1  AAACTTTAGAATATTATTTCCTTTATTTGGATTTATTGAATTTGTGCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAGAATATTATTTCCTTTATTTGGATTTATTGAATTTGTGCCTA  750

seq1  TGGAGTTTATCTGATGTAGAGAGATAGTATCATTATTTGTTACACCGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTATCTGATGTAGAGAGATAGTATCATTATTTGTTACACCGGGC  800

seq1  ACTGAACTATTAACTAGAAGAGGTTA-TTAGCTATCAAAGACAAGCAAAG  848
      ||||| ||||||||||| |||||||| ||||||||| ||||| |||||||
seq2  ACTGACCTATTAACTAGGAGAGGTTATTTAGCTATCTAAGAC-AGCAAAG  849

seq1  CGATGAAT-GCTACACAATAACAATACAGTGAAAGCTAAAAATACAC-TT  896
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CGATGAATGGCTACACAATAACAATACAGTGAAAGCTAAAAATACACTTT  899

seq1  ATGGCAATATTTTACC-AAGATAAAGGACTGTTAACAGCTCTAAGGGAAA  945
      |||||| ||||||||| | |||||||||||||| ||||||||||||||||
seq2  ATGGCATTATTTTACCTAGGATAAAGGACTGTTTACAGCTCTAAGGGAAA  949

seq1  A  946
      |
seq2  A  950


seq1: chr8_38483093_38484185
seq2: B6Ng01-246N08.g_69_1171 (reverse)

seq1  TATTTT-GTGGGATAGATAATTGCTCATATG-AGCTTGGCTCTTATTCTA  48
      |||||| ||| ||||||||||   ||||||| |||| |||||||||||||
seq2  TATTTTGGTGAGATAGATAATGATTCATATGAAGCTGGGCTCTTATTCTA  50

seq1  TT-CTAA--TAAATATTTTCTCTTATTTTTTGTTTTTTTGAGACAGGGTT  95
      || || |   | |||||| ||| || ||||||||||||  ||||||||||
seq2  TTGCTGAGTGAGATATTTGCTC-TAATTTTTGTTTTTTGAAGACAGGGTT  99

seq1  TCTCTGTATAGCCCTGTCTATCCTGAAAC-TCACTCTGTAG-ACCAGGCT  143
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TCTCTGTATAGCCCTGTCTATCCTGAAACTTCACTCTGTAGAACCAGGCT  149

seq1  GGCCTCAAACTCACAGATCCACCTGCCTCTGCC-TCCCAAGTGCTGGGAT  192
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GG-CTCAAACTCACAGATCCACCTGCCTCTGCCTTCCCAAGTGCTGGGAT  198

seq1  TAAA-GGCGTGCGCCACCACCGCCTGGCTCTAAC-AAATAATTTTGAGTT  240
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAGGGCGTGCGCCACCACCGCCTGGCTCTAACAAAATAATTTTGAGTT  248

seq1  TGGAAAATGGAAAA-TTTTTATGTTCATTGCAGTGAAATAGTGAAGATTA  289
       | ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAAAAATGGAAAATTTTTTATGTTCATTGCAGTGAAATAGTGAAGATTA  298

seq1  TTTTTCAATCCAGTCGTTTTTT-AAAATATAACCTGTACAAAGACTGAGT  338
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTTCAATCCAGTCGTTTTTTAAAAATATAACCTGTACAAAGACTGAGT  348

seq1  TTCTAGGCCTTGAGAGCTTCTTAAATATATGAAAATAATAAGGCATCCAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCCTTGAGAGCTTCTTAAATATATGAAAATAATAAGGCATCCAA  398

seq1  CAATTATTTAAAAGAGTCTCTATTGTGGTAATATTTGAAGGAATAGCTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTTAAAAGAGTCTCTATTGTGGTAATATTTGAAGGAATAGCTAA  448

seq1  GATGATTCAAATTTTATGCCATAGAAAGCCATTTTGAAAGATGACCTCTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCAAATTTTATGCCATAGAAAGCCATTTTGAAAGATGACCTCTC  498

seq1  TGTAATTTCAACTTTTATCTCCTAATTTCTAGAATGTTCCCACATTTTCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTCAACTTTTATCTCCTAATTTCTAGAATGTTCCCACATTTTCC  548

seq1  AATGACATAGTCATTCTTATGAAAATGCGAATAATGTGAATGAATATAAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATAGTCATTCTTATGAAAATGCGAATAATGTGAATGAATATAAT  598

seq1  TCAGGAGCATTCATGGGAGAACTACTCTGTGTCTTGGTTAGTCTTGACTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCATTCATGGGAGAACTACTCTGTGTCTTGGTTAGTCTTGACTG  648

seq1  TTAACCTGATTAGGATGAAATCCTAGGAAATAAGTAACGCACACCTCTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGATTAGGATGAAATCCTAGGAAATAAGTAACGCACACCTCTTG  698

seq1  ATGTATAGAGAAGACATTTCCAGATATAATTAGATAAACAAGGTATTTAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGAGAAGACATTTCCAGATATAATTAGATAAACAAGGTATTTAT  748

seq1  TAATGCATAGTTTAATCCATTTATGGATTCACACTTTGAATAGATCCTTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATAGTTTAATCCATTTATGGATTCACACTTTGAATAGATCCTTG  798

seq1  AGAGAGCCTGCGGAACTGTACCAGAGGGAGCAGGTTAGAGAAAGTAAGTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCTGCGGAACTGTACCAGAGGGAGCAGGTTAGAGAAAGTAAGTC  848

seq1  AATGGAACTGTGCCATCCTTGGACAGAACTTGTCTGGATCCTTCCTGGTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACTGTGCCATCCTTGGACAGAACTTGTCTGGATCCTTCCTGGTA  898

seq1  CCACTTCACTCTGCTTCCAGTCTTTCCTGGGGTAAAGAAACTCCACTTCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCACTCTGCTTCCAGTCTTTCCTGGGGTAAAGAAACTCCACTTCC  948

seq1  TTGATCCCATAGGCAGGTTCTGTCCACACCAAGAAACTAAACAACCAGGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCATAGGCAGGTTCTGTCCACACCAAGAAACTAAACAACCAGGG  998

seq1  ACAGAAATTTCTTAAGTCAAGAGAAAATATAGAAATGGGTCACCATGTTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTTCTTAAGTCAAGAGAAAATATAGAAATGGGTCACCATGTTC  1048

seq1  AAAGTACTTGCTCTTCCTTCAGAGGACCCAAGTTCTATCCTGTGGCCTTG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTGCTCTTCCTTCAGAGGACCCAAGTTCTATCCTGTGGCCTTG  1098

seq1  AATTC  1093
      |||||
seq2  AATTC  1103


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