BAC Information

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BAC

Clone NameB6Ng01-253D02
Chromosome8 (Build37)
Map Location 107,117,114 - 107,118,271
singlet/doubletsinglet
Overlap gene4833426J09Rik
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007
Downstream geneCdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253D02.bB6Ng01-253D02.g
ACCGA059994GA059995
length8641,153
definitionB6Ng01-253D02.b B6Ng01-253D02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttgtctgggtaagactggctattgtcccaagtaaacactctg
cagaccattctttgtaaagcctaattagtttcactggtctctactagaag
taaatttgaatgttactgaataggtaacattcttattgaattactactga
atttcaagtttgttggcttcaaggattttctgggacattggaacactggg
gaaggcttagctatgtcagaattcagtctttaaaggcacttataagaaaa
taatactaaaagagagcacgtgcatccatacaccagactaacacggggat
agggtatgagtatacgggttatgagaatgcccaggttccaggaggttgag
tttccttgaaactctttgcctcgtgagtgcttccatgcctcttgtcctgc
caagcagatttcactggagtgtgcatagcaaccagggaattcatgagcta
tggggctgagaaatatgccattgcttcaatctctcacccaaggagccagc
tccttcattttctggatattctggtgcttttttttcaaggctggactctg
gtgtcacatctagtggaaatgtatccgccatttatagaacatcgctcaga
ggatgttcattgatgattttccaagggttggaacacagggcccccaatgg
aggagctagagaaagtacccaaggagctaaaggggtctgaaaccctgtag
gtggaacaacaatatgaactaaccagtacccccagagctcgtgtctctag
ctgcatatgcagcagaagatggcctagtcggccatcattgggaagagagg
ctccttggtcttgcaaactttatatgccccagtacaggggaacaccaggg
ccaagaagtgggag
gaattcatggggtaggtagattccttgggggaacagatacaaaagggaaa
acttaaatactgcaagggagactgaacaaaggacgtagatagtaggctct
ggcctgaggaacggtttagaaaggaaaaggaggcacaagttggctggcag
gaaggccggaagctctctataaaatcagagagcgcattagcaaaagtgat
gttctagcagtttagtatttttaataacttgaactttgaagcttttataa
actcttgaaatttcaggctgaaaaaacactccacctccacctgccacttg
tttcagaatgtcaagtactgtgtcctactggatcttcaattctgcaagga
atcgtattgctcttttacgaggtgggagacgcctatactcaagggctgcc
acgagtaggaacctgctgaagtggaggcccttttctccggcattggcatc
atcagccctcaagtgtggttctccacctggtggctttgccctgcggaaag
cctacagacacacatcaaccgaggaagaggatttccacctacagctcagc
cccgaacaggtcagtgacctgctccgagctggcgagtcatcccacaaggt
ccttgatttcaacaacggagtaccaaattcagtgttaaggttcgagagca
accagctggctgccaattcccctgtggaggaccggcaaggtgtggctacc
tgcgtccaaacgaatgggatgatgttcggtatttttgatggacacggggg
ccacgcgtgtgcgcaagcggtgagtgagaggcttttctactacatggcgg
tgtccctgatgtcccatcagaccttggagcagatggaggaagcaacggaa
aacatgaagcctttgctgcccatcctgcgttggctcaagcaccccggaga
tagtatttataaggacgtcacgtccgtgcatctggaccacctccgtgtct
attgggcaggagctcttgacctgcatatgggaaatggggctgagcattga
gagcattgatgtactccttcagagactggattctgacatctcgctagaaa
tccaggctctctggagatgagtacgagaaacttatccctcaggtgccttt
ctctgggcaacaagtcttgcatggccacggttcaattggagtcacctgca
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107117114_107118271
seq2: B6Ng01-253D02.g_64_1216

seq1  GAATTCATGGGGTAGGTAGATTCCTTGGGGGAACAGATACAAAAGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGGTAGGTAGATTCCTTGGGGGAACAGATACAAAAGGGAAA  50

seq1  ACTTAAATACTGCAAGGGAGACTGAACAAAGGACGTAGATAGTAGGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATACTGCAAGGGAGACTGAACAAAGGACGTAGATAGTAGGCTCT  100

seq1  GGCCTGAGGAACGGTTTAGAAAGGAAAAGGAGGCACAAGTTGGCTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGGAACGGTTTAGAAAGGAAAAGGAGGCACAAGTTGGCTGGCAG  150

seq1  GAAGGCCGGAAGCTCTCTATAAAATCAGAGAGCGCATTAGCAAAAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCGGAAGCTCTCTATAAAATCAGAGAGCGCATTAGCAAAAGTGAT  200

seq1  GTTCTAGCAGTTTAGTATTTTTAATAACTTGAACTTTGAAGCTTTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGCAGTTTAGTATTTTTAATAACTTGAACTTTGAAGCTTTTATAA  250

seq1  ACTCTTGAAATTTCAGGCTGAAAAAACACTCCACCTCCACCTGCCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGAAATTTCAGGCTGAAAAAACACTCCACCTCCACCTGCCACTTG  300

seq1  TTTCAGAATGTCAAGTACTGTGTCCTACTGGATCTTCAATTCTGCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAATGTCAAGTACTGTGTCCTACTGGATCTTCAATTCTGCAAGGA  350

seq1  ATCGTATTGCTCTTTTACGAGGTGGGAGACGCCTATACTCAAGGGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTATTGCTCTTTTACGAGGTGGGAGACGCCTATACTCAAGGGCTGCC  400

seq1  ACGAGTAGGAACCTGCTGAAGTGGAGGCCCTTTTCTCCGGCATTGGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTAGGAACCTGCTGAAGTGGAGGCCCTTTTCTCCGGCATTGGCATC  450

seq1  ATCAGCCCTCAAGTGTGGTTCTCCACCTGGTGGCTTTGCCCTGCGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCCTCAAGTGTGGTTCTCCACCTGGTGGCTTTGCCCTGCGGAAAG  500

seq1  CCTACAGACACACATCAACCGAGGAAGAGGATTTCCACCTACAGCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGACACACATCAACCGAGGAAGAGGATTTCCACCTACAGCTCAGC  550

seq1  CCCGAACAGGTCAGTGACCTGCTCCGAGCTGGCGAGTCATCCCACAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAACAGGTCAGTGACCTGCTCCGAGCTGGCGAGTCATCCCACAAGGT  600

seq1  CCTTGATTTCAACAACGGAGTACCAAATTCAGTGTTAAGGTTCGAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTTCAACAACGGAGTACCAAATTCAGTGTTAAGGTTCGAGAGCA  650

seq1  ACCAGCTGGCTGCCAATTCCCCTGTGGAGGACCGGCAAGGTGTGGCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGGCTGCCAATTCCCCTGTGGAGGACCGGCAAGGTGTGGCTACC  700

seq1  TGCGTCCAAACGAATGGGATGATGTTCGGTATTTTTGATGGACACGGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCCAAACGAATGGGATGATGTTCGGTATTTTTGATGGACACGGGGG  750

seq1  CCACGCGTGTGCGCAAGCGGTGAGTGAGAGGCTTTTCTACTACATGGCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCGTGTGCGCAAGCGGTGAGTGAGAGGCTTTTCTACTACATGGCGG  800

seq1  TGTCCCTGATGTCCCATCAGACCTTGGAGCAGATGGAGGAAGCAACGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGATGTCCCATCAGACCTTGGAGCAGATGGAGGAAGCAACGGAA  850

seq1  AACATGAAGCCTTTGCTGCCCATCCTGCGTTGGCTCAAGCACCCCGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAGCCTTTGCTGCCCATCCTGCGTTGGCTCAAGCACCCCGGAGA  900

seq1  TAGTATTTATAAGGACGTCACGTCCGTGCATCTGGACCACCTCCGTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTATAAGGACGTCACGTCCGTGCATCTGGACCACCTCCGTGTCT  950

seq1  ATT-GGCAGGAGCTCCTTGACCTGCATAT-GGAAATGGGGCTGAGCATTG  998
      ||| |||||||||| |||||||||||||| ||||||||||||||||||||
seq2  ATTGGGCAGGAGCT-CTTGACCTGCATATGGGAAATGGGGCTGAGCATTG  999

seq1  AAGAAGCATTGATGTACTCCTTCCAGAGACTGGATTCTGACATCTCGCTA  1048
      |   |||||||||||||||||| |||||||||||||||||||||||||||
seq2  A--GAGCATTGATGTACTCCTT-CAGAGACTGGATTCTGACATCTCGCTA  1046

seq1  GAAATCCAGGCTCCTCTGGAAGATGAGGTAACGAGAAACTTATCCCTCCA  1098
      |||||||||||| |||||| |||||||   ||||||||||||||||| ||
seq2  GAAATCCAGGCT-CTCTGG-AGATGAG--TACGAGAAACTTATCCCT-CA  1091

seq1  GGTTGCTTTCTCTGGGGCAACA--GCCTGCATGGCCCACG--TCAA-TGG  1143
      |||  |||||||| ||||||||   | ||||||| |||||  |||| |||
seq2  GGTGCCTTTCTCT-GGGCAACAAGTCTTGCATGG-CCACGGTTCAATTGG  1139

seq1  AGTTCACCTGCATGT  1158
      || ||||||||||||
seq2  AG-TCACCTGCATGT  1153