BAC Information

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BAC

Clone NameB6Ng01-254H06
Chromosome8 (Build37)
Map Location 123,529,826 - 123,611,107
singlet/doubletdoublet
Overlap geneLOC100042333, Foxf1a
Upstream geneCrispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik, Gse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8
Downstream geneMthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254H06.bB6Ng01-254H06.g
ACCGA060914GA060915
length1,224945
definitionB6Ng01-254H06.b B6Ng01-254H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,529,826 - 123,531,048)(123,610,178 - 123,611,107)
sequence
ggaattcatcacctgaaaataataataatgacgatgatgatggaacttgt
gaggccaaaagtgggaacacaaaagaacaaataggatggacaccaaacta
tggcaagaccacagttttaaacataatcatatcaaaaccacactaagtgt
aaatggtacaaaaactttaaaaggctgagattatcagacaaaataaaaaa
ggtaagtcctgacagaaaggacaaaagacatttttcttaaactgctttaa
aagaaaagattaaaatggcaaagatgcatctggggattgaaaacacattt
atttattatgtgcctgaaaataagcacaaatgccaaaagagtagaagtgg
aataggccgtggctatgtcttgtgtgagacgtaccacaggcaggcagcct
gaggtgtgccaaacgtgtgcatcccatgttgtgttctcaggaacaactaa
aaatagaacctaagataactgctaagaagccaacaaaaggagacagaatg
aaacaacaccgaaataatagctggttaattaacagagagatagaaaagga
ggagaaaatggagacaatacagaatagcaaatagcaaggtctgcgtaaag
agctgggcgggtgaagtttttacccagcaagcatgaggcatgtatgcatc
cccagaaatcacataaaagctaggtaggtcaccacctaggactccggagc
cagaatcatgggatccctgggtcacactgcttgctaggctaagattcatt
gagctctggatttatcaagagcctgtctcaatgaatacaatggagagtca
tgggtaaagatacccaacaacttcacctcctgcatatgcatccatgtgcc
cactgaaatgtcttcaggttgtatgggctgtgagcacctgtgtggttcct
atgatccagttagatctgctccaggatcatcactactcagggaatgaccc
tgtggcaacagcagcagagtcccgagggaacccaccacaaactcatttga
aaactttgcttatgttttgctgtaacatcccagtagctggatcagtttga
gtcaatgtccagagtcacagaacaagggaaccacatgcaaccctcacgac
ggagctttcgagcccaagaataaggttgtgcgccacacaggcaagtaagg
gaggtctgggccatctggaaccaaccttgggccatatcatgtctcacaag
aaaccttggagccaacaaggatgt
gaattctttccacgtatctggcttcccccgacatgacacagcacctccgt
ggctggtttcagtggggttgaaagtatttatttactgacagctgcagtct
gacctggcccccggctgccgctgtttttttagaaattagtgagggagtga
gggtagagacgctgctcccagtctgtgttgggattttctttacaaataat
ccgttaggggtggggctatcccttttcacttgctgacgggttatacctcc
agagtaaagcagtttgtggcggtgggctcctggtccctgggccggccagg
ctgggctggagggccccgtggcctcacctcacatcacacacggcttgatg
tcttggtaggtgacctgctggtgatagtaagatcctccgcctgttgtatg
catagaagaagaggccatggcattgaaagagaagacaaactcctttctgt
cacacatgctgggcgactgtgagtgataccgagggatgcctgtagggtag
ggcgacagcaaaaggagggagcaaaacattagcttccagggcatgagttc
aggacccagcctagaagccccaatgaacttggttatgtgtaagcaggcaa
ctcagccctgctctacacattcctcctagccccacttcctagtaaaactg
gccttcctggggttcccagcatttggcaggaactgaactgagaaagggga
ctacggagtcctccgtggtcccctcgtgggtccctcgctgtgccttcctt
ggattttggactaaatcactaaactccaagtcctgctcgaggttgctttc
ctgccgctttgggcctctccagtctggactccttgccctggcagagggct
tcttttgatgcggaaaggggaaggcctaatgaggcggcccgtctcgtccg
tcatggccctcatgctcccaaagcctggaaccgctgagatttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_123529826_123531048
seq2: B6Ng01-254H06.b_46_1268

seq1  GAATTCATCACCTGAAAATAATAATAATGACGATGATGATGGAACTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACCTGAAAATAATAATAATGACGATGATGATGGAACTTGTG  50

seq1  AGGCCAAAAGTGGGAACACAAAAGAACAAATAGGATGGACACCAAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAGTGGGAACACAAAAGAACAAATAGGATGGACACCAAACTAT  100

seq1  GGCAAGACCACAGTTTTAAACATAATCATATCAAAACCACACTAAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACCACAGTTTTAAACATAATCATATCAAAACCACACTAAGTGTA  150

seq1  AATGGTACAAAAACTTTAAAAGGCTGAGATTATCAGACAAAATAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACAAAAACTTTAAAAGGCTGAGATTATCAGACAAAATAAAAAAG  200

seq1  GTAAGTCCTGACAGAAAGGACAAAAGACATTTTTCTTAAACTGCTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCCTGACAGAAAGGACAAAAGACATTTTTCTTAAACTGCTTTAAA  250

seq1  AGAAAAGATTAAAATGGCAAAGATGCATCTGGGGATTGAAAACACATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATTAAAATGGCAAAGATGCATCTGGGGATTGAAAACACATTTA  300

seq1  TTTATTATGTGCCTGAAAATAAGCACAAATGCCAAAAGAGTAGAAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGTGCCTGAAAATAAGCACAAATGCCAAAAGAGTAGAAGTGGA  350

seq1  ATAGGCCGTGGCTATGTCTTGTGTGAGACGTACCACAGGCAGGCAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCGTGGCTATGTCTTGTGTGAGACGTACCACAGGCAGGCAGCCTG  400

seq1  AGGTGTGCCAAACGTGTGCATCCCATGTTGTGTTCTCAGGAACAACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCCAAACGTGTGCATCCCATGTTGTGTTCTCAGGAACAACTAAA  450

seq1  AATAGAACCTAAGATAACTGCTAAGAAGCCAACAAAAGGAGACAGAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACCTAAGATAACTGCTAAGAAGCCAACAAAAGGAGACAGAATGA  500

seq1  AACAACACCGAAATAATAGCTGGTTAATTAACAGAGAGATAGAAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACCGAAATAATAGCTGGTTAATTAACAGAGAGATAGAAAAGGAG  550

seq1  GAGAAAATGGAGACAATACAGAATAGCAAATAGCAAGGTCTGCGTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATGGAGACAATACAGAATAGCAAATAGCAAGGTCTGCGTAAAGA  600

seq1  GCTGGGCGGGTGAAGTTTTTACCCAGCAAGCATGAGGCATGTATGCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCGGGTGAAGTTTTTACCCAGCAAGCATGAGGCATGTATGCATCC  650

seq1  CCAGAAATCACATAAAAGCTAGGTAGGTCACCACCTAGGACTCCGGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCACATAAAAGCTAGGTAGGTCACCACCTAGGACTCCGGAGCC  700

seq1  AGAATCATGGGATCCCTGGGTCACACTGCTTGCTAGGCTAAGATTCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATGGGATCCCTGGGTCACACTGCTTGCTAGGCTAAGATTCATTG  750

seq1  AGCTCTGGATTTATCAAGAGCCTGTCTCAATGAATACAATGGAGAGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGATTTATCAAGAGCCTGTCTCAATGAATACAATGGAGAGTCAT  800

seq1  GGGTAAAGATACCCAACAACTTCACCTCCTGCATATGCATCCATGTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGATACCCAACAACTTCACCTCCTGCATATGCATCCATGTGCCC  850

seq1  ACTGAAATGTCTTCAGGTTGTATGGGCTGTGAGCACCTGTGTGGTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGTCTTCAGGTTGTATGGGCTGTGAGCACCTGTGTGGTTCCTA  900

seq1  TGATCCAGTTAGATCTGCTCCAGGATCATCACTACTCAGGGAATGACCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAGTTAGATCTGCTCCAGGATCATCACTACTCAGGGAATGACCCT  950

seq1  GTGGCAACAGCAGCAGAGTCCCGAGGGAAACCCACCACAAACTCATTTGA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGGCAACAGCAGCAGAGTCCCGAGGG-AACCCACCACAAACTCATTTGA  999

seq1  AAACTTTGCTTATGTTTTTGCTGTAACATCCCAGTAGCTGGATCAAGTTT  1050
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AAACTTTGCTTATG-TTTTGCTGTAACATCCCAGTAGCTGGATC-AGTTT  1047

seq1  GAGTCCATGTCCCAGAGTCACAGAACAAGGGAA-CACATGCAACCCTCAA  1099
      ||||| |||| |||||||||||||||||||||| |||||||||||||| |
seq2  GAGTCAATGT-CCAGAGTCACAGAACAAGGGAACCACATGCAACCCTC-A  1095

seq1  CGAACGGAGC-TTCGAGGCCCAAG-ATAAAGGTGTGCG-CACACAGCAAA  1146
      || ||||||| ||||| ||||||| |||| | |||||| |||||||  ||
seq2  CG-ACGGAGCTTTCGA-GCCCAAGAATAAGGTTGTGCGCCACACAGGCAA  1143

seq1  GT-AGGGA-GTCTGGCCAATACTGGAACCCACCCTGGG-CATAATTCATG  1193
      || ||||| |||||| | || |||||||| ||| |||| ||||  |||||
seq2  GTAAGGGAGGTCTGGGCCAT-CTGGAACCAACCTTGGGCCATA--TCATG  1190

seq1  TCTCACAAAGAACCTT-GAGCC-ACAA-GATGT  1223
      ||||||||  |||||| ||||| |||| |||||
seq2  TCTCACAAGAAACCTTGGAGCCAACAAGGATGT  1223

seq1: chr8_123610178_123611107
seq2: B6Ng01-254H06.g_72_1016 (reverse)

seq1  CAGAAATCTCAGC-GTTCCAGGCTCTGGG-GCATGA-GGCCATGACGGAC  47
      ||||||||||||| |||||||||| |||| |||||| |||||||||||||
seq2  CAGAAATCTCAGCGGTTCCAGGCTTTGGGAGCATGAGGGCCATGACGGAC  50

seq1  G-GACGGGCCGCCTC-CTAGGCCTTCCCC-TTCCGCATC-AAAGAAGCCC  93
      | |||||||||||||  |||||||||||| ||||||||| ||||||||||
seq2  GAGACGGGCCGCCTCATTAGGCCTTCCCCTTTCCGCATCAAAAGAAGCCC  100

seq1  TCTGCCA-GGCAAGGAGTCCAGACTGGAGAGGCCC-AAGCGGCAGG-AAG  140
      ||||||| ||||||||||||||||||||||||||| |||||||||| |||
seq2  TCTGCCAGGGCAAGGAGTCCAGACTGGAGAGGCCCAAAGCGGCAGGAAAG  150

seq1  CAACCTCGAGCAGGACTTGGAG-TTAGTGATTTAGTCC-AAATCC-AGGA  187
      |||||||||||||||||||||| ||||||||||||||| |||||| ||||
seq2  CAACCTCGAGCAGGACTTGGAGTTTAGTGATTTAGTCCAAAATCCAAGGA  200

seq1  AGGCACAGCGAGGGA-CCACGA-GGGACCACGGAGGACTCCGTAGTCCCC  235
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  AGGCACAGCGAGGGACCCACGAGGGGACCACGGAGGACTCCGTAGTCCCC  250

seq1  TTTCTCAGTTCAGTTCCTGCCAAATGCTGGGAACCCCAGGAAGGCCAGTT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTTCAGTTCCTGCCAAATGCTGGGAACCCCAGGAAGGCCAGTT  300

seq1  TTACTAGGAAGTGGGGCTAGGAGGAATGTGTAGAGCAGGGCTGAGTTGCC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGGAAGTGGGGCTAGGAGGAATGTGTAGAGCAGGGCTGAGTTGCC  350

seq1  TGCTTACACATAACCAAGTTCATTGGGGCTTCTAGGCTGGGTCCTGAACT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACACATAACCAAGTTCATTGGGGCTTCTAGGCTGGGTCCTGAACT  400

seq1  CATGCCCTGGAAGCTAATGTTTTGCTCCCTCCTTTTGCTGTCGCCCTACC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTGGAAGCTAATGTTTTGCTCCCTCCTTTTGCTGTCGCCCTACC  450

seq1  CTACAGGCATCCCTCGGTATCACTCACAGTCGCCCAGCATGTGTGACAGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCATCCCTCGGTATCACTCACAGTCGCCCAGCATGTGTGACAGA  500

seq1  AAGGAGTTTGTCTTCTCTTTCAATGCCATGGCCTCTTCTTCTATGCATAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTGTCTTCTCTTTCAATGCCATGGCCTCTTCTTCTATGCATAC  550

seq1  AACAGGCGGAGGATCTTACTATCACCAGCAGGTCACCTACCAAGACATCA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCGGAGGATCTTACTATCACCAGCAGGTCACCTACCAAGACATCA  600

seq1  AGCCGTGTGTGATGTGAGGTGAGGCCACGGGGCCCTCCAGCCCAGCCTGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGTGTGATGTGAGGTGAGGCCACGGGGCCCTCCAGCCCAGCCTGG  650

seq1  CCGGCCCAGGGACCAGGAGCCCACCGCCACAAACTGCTTTACTCTGGAGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCAGGGACCAGGAGCCCACCGCCACAAACTGCTTTACTCTGGAGG  700

seq1  TATAACCCGTCAGCAAGTGAAAAGGGATAGCCCCACCCCTAACGGATTAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCGTCAGCAAGTGAAAAGGGATAGCCCCACCCCTAACGGATTAT  750

seq1  TTGTAAAGAAAATCCCAACACAGACTGGGAGCAGCGTCTCTACCCTCACT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGAAAATCCCAACACAGACTGGGAGCAGCGTCTCTACCCTCACT  800

seq1  CCCTCACTAATTTCTAAAAAAACAGCGGCAGCCGGGGGCCAGGTCAGACT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTAATTTCTAAAAAAACAGCGGCAGCCGGGGGCCAGGTCAGACT  850

seq1  GCAGCTGTCAGTAAATAAATACTTTCAACCCCACTGAAACCAGCCACGGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTCAGTAAATAAATACTTTCAACCCCACTGAAACCAGCCACGGA  900

seq1  GGTGCTGTGTCATGTCGGGGGAAGCCAGATACGTGGAAAGAATTC  930
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTGTCATGTCGGGGGAAGCCAGATACGTGGAAAGAATTC  945