BAC Information

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BAC

Clone NameB6Ng01-254M20
Chromosome8 (Build37)
Map Location 72,634,929 - 72,739,974
singlet/doubletdoublet
Overlap geneNcan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42
Upstream geneAtp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4
Downstream geneArmc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254M20.bB6Ng01-254M20.g
ACCGA061174GA061175
length1,1311,077
definitionB6Ng01-254M20.b B6Ng01-254M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,634,929 - 72,636,055)(72,738,901 - 72,739,974)
sequence
gaattctctcctagagagtgtggctagtcacatggtttccacccagttta
ggaatgatctattgctttgtttatggcttttcaagacagaatctcctgta
gcacaggctggctttgagctctgtagtccagaatgacctcaacacttctg
atttctttcgcctcctcctccccccaggctctcagcccacacctggcttt
atttggtgattggcatgggactcaggccttcgcgcttgctagtgagaccc
tgtctcgagcaaaacataaataagtaaataaatgctggtagggctgtggc
cttcgcttgcctgtgtctagaagcatggccaccatgctcatcaatggtcc
ccgtggggcttacgggtttaaggcataagatgtggccctcaacaaggatc
ctggcgagggacgtgattcggagaggacctactggcagggcatgtggtct
tcatatgctcctaattccagggaacccaatagtgggatgtggtttgttcc
gcccaatgcagattatgggatgtggtctggaaggagaaacgcccatggag
gcgtggctttcatcatacactttcaggggtcttgtgacgtgaggcatagc
cataaaccaagttttccggctggggttgtgatcgcaagggaaaacacaca
cacacatgcacacgcacacgcacacacgcacgtacgcacgcacaactagt
agctgcagaggttaaaccgtgtgtagtcaggcaaggaccactcctagggt
cacggcttagtcagacaccctgggctgttgacctgttttggatgatgcac
acccacgaggagtggccaagacaactgctctggggcgtgatctgcaggga
cacttcctaacgcacctcggaagcagtaggcgtcgaagcgtgctcctggc
gcaggaagccggtgcggttggcgaagcggtacacagtgcgcacacctggg
gcgggcccccgcaacgccggcgcggagtctgggatggggtagcgcacgct
gccgtctgccagccagctccgggtcgcactggtcagggccctcgtgccag
gccaagttgcaactgcccccacgaggcagcgctgcacctggcggctgaca
tggtgcccgcccgcgtcccgccaaggtcagt
gaattcatttctggcaaacctggtctatgtgatgagctctaggccagcca
cggctacatagtgataccctgtctcatcaaaggcactatgggctgaaaaa
gatggattggtggttaagagatggcttgctatgctatgcaaatgaaaggc
tttggctccccagccccagctcccgcatgaaaacgctggtcatggctgca
catggttgtcatggtaaggctgctccaggagagtacaaacagtaggctgt
tgggaactcactggctgtcagagcagccttgagatcccgattcaggaaat
ggtggagagctcgacagcaagacactagcttccttctctgcttctgcaca
gggtacacacaccgacaaacaggcagggaagggctgcacagtgaagagga
gcgagtaaagaggtctgctgattcccaagtccagtttcagggtcctgata
caaggtgaaggattacatttttatcacacttatttatgtatgtattcaat
ttattgtgagtatacacctcacacaacacagctggtgtgtgggggggtgt
cagaggacaactttcagaagtcagttctctccttccacggtggggcccag
ggattgaactcaggttgtcagtctttgaggcaatgcccctttactagccg
agccatattctcacaagcccaaggttgtgatatttgaacagaaggcagga
tctggaaacagctaagtggtcctcttcaggccacgactctttgcttgtca
ctgtcaccttgcttgctcagcttcaggctctcctcaagtctgacaggatg
tttggaactgtgtggactctttgccagaggcaaagttaagcttcagtgtt
gggctgcatcaggcttaaggttcctggggaaattctttttgttgtgggtg
tcagggggcggggcaaggtttctctacatctgtatagccttggctgtcca
ggacctcactctgtagaccaggcttgccttcgaactcattagacatcggc
cttgcctttgtttcggagtcctggattaaggcataagccacaaccaactg
gtcctggagaaaatctaaagtttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72634929_72636055
seq2: B6Ng01-254M20.b_47_1177

seq1  GAATTCTCTCCTAGAGAGTGTGGCTAGTCACATGGTTTCCACCCAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTAGAGAGTGTGGCTAGTCACATGGTTTCCACCCAGTTTA  50

seq1  GGAATGATCTATTGCTTTGTTTATGGCTTTTCAAGACAGAATCTCCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATCTATTGCTTTGTTTATGGCTTTTCAAGACAGAATCTCCTGTA  100

seq1  GCACAGGCTGGCTTTGAGCTCTGTAGTCCAGAATGACCTCAACACTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCTGGCTTTGAGCTCTGTAGTCCAGAATGACCTCAACACTTCTG  150

seq1  ATTTCTTTCGCCTCCTCCTCCCCCCAGGCTCTCAGCCCACACCTGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCGCCTCCTCCTCCCCCCAGGCTCTCAGCCCACACCTGGCTTT  200

seq1  ATTTGGTGATTGGCATGGGACTCAGGCCTTCGCGCTTGCTAGTGAGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGATTGGCATGGGACTCAGGCCTTCGCGCTTGCTAGTGAGACCC  250

seq1  TGTCTCGAGCAAAACATAAATAAGTAAATAAATGCTGGTAGGGCTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAGCAAAACATAAATAAGTAAATAAATGCTGGTAGGGCTGTGGC  300

seq1  CTTCGCTTGCCTGTGTCTAGAAGCATGGCCACCATGCTCATCAATGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTTGCCTGTGTCTAGAAGCATGGCCACCATGCTCATCAATGGTCC  350

seq1  CCGTGGGGCTTACGGGTTTAAGGCATAAGATGTGGCCCTCAACAAGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGGCTTACGGGTTTAAGGCATAAGATGTGGCCCTCAACAAGGATC  400

seq1  CTGGCGAGGGACGTGATTCGGAGAGGACCTACTGGCAGGGCATGTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGAGGGACGTGATTCGGAGAGGACCTACTGGCAGGGCATGTGGTCT  450

seq1  TCATATGCTCCTAATTCCAGGGAACCCAATAGTGGGATGTGGTTTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCTCCTAATTCCAGGGAACCCAATAGTGGGATGTGGTTTGTTCC  500

seq1  GCCCAATGCAGATTATGGGATGTGGTCTGGAAGGAGAAACGCCCATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGCAGATTATGGGATGTGGTCTGGAAGGAGAAACGCCCATGGAG  550

seq1  GCGTGGCTTTCATCATACACTTTCAGGGGTCTTGTGACGTGAGGCATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCTTTCATCATACACTTTCAGGGGTCTTGTGACGTGAGGCATAGC  600

seq1  CATAAACCAAGTTTTCCGGCTGGGGTTGTGATCGCAAGGGAAAACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCAAGTTTTCCGGCTGGGGTTGTGATCGCAAGGGAAAACACACA  650

seq1  CACACATGCACACGCACACGCACACACGCACGTACGCACGCACAACTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCACACGCACACGCACACACGCACGTACGCACGCACAACTAGT  700

seq1  AGCTGCAGAGGTTAAACCGTGTGTAGTCAGGCAAGGACCACTCCTAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGAGGTTAAACCGTGTGTAGTCAGGCAAGGACCACTCCTAGGGT  750

seq1  CACGGCTTAGTCAGACACCCTGGGCTGTTGACCTG-TTTGGATGATGCAC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACGGCTTAGTCAGACACCCTGGGCTGTTGACCTGTTTTGGATGATGCAC  800

seq1  ACCCACGAGGAGTGGCCAAGACAACTGCTCTGGGGCGTGATCTGCAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGAGGAGTGGCCAAGACAACTGCTCTGGGGCGTGATCTGCAGGGA  850

seq1  CACTTCCTAACGCACCTCGGAAGCAGTAGGCGTCGAAGCGTGCTCCTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTAACGCACCTCGGAAGCAGTAGGCGTCGAAGCGTGCTCCTGGC  900

seq1  GCAGGAAAGCCGGTGCGGTTGGCGAAGCGGTACACAGTGCGCACACCTGG  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGG-AAGCCGGTGCGGTTGGCGAAGCGGTACACAGTGCGCACACCTGG  949

seq1  GGCGGGGCCCCCGCAACGCCGGCGCGGAGTCT-GGATGGGGTAGCGCACG  998
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGC-GGGCCCCCGCAACGCCGGCGCGGAGTCTGGGATGGGGTAGCGCACG  998

seq1  CTGCCGTCTGCCAGCCAGC-CCGGGTCGCACTGGTCCAGGCCCTCGTGCC  1047
      ||||||||||||||||||| ||||||||||||||||  ||||||||||||
seq2  CTGCCGTCTGCCAGCCAGCTCCGGGTCGCACTGGTCAGGGCCCTCGTGCC  1048

seq1  AGGCC-AGGTGCAACTGCCCCACCGAGGCCAGCGCTGCACCCTGCCGCTG  1096
      ||||| || ||||||||||||  ||||| ||||||||||||  || ||||
seq2  AGGCCAAGTTGCAACTGCCCCCACGAGG-CAGCGCTGCACCTGGCGGCTG  1097

seq1  ACATTGTGCCCGCGCG---CCCGCCAGGGTCAGT  1127
      |||| |||||||| ||   ||||||| |||||||
seq2  ACATGGTGCCCGCCCGCGTCCCGCCAAGGTCAGT  1131

seq1: chr8_72738901_72739974
seq2: B6Ng01-254M20.g_69_1145 (reverse)

seq1  CTCCAAAACTTTAGATTTTCTCCAGGGACCAGGTGGTGGTGGCTTATGCC  50
      |||| ||||||||||||||||||| ||||||| |||| ||||||||||||
seq2  CTCC-AAACTTTAGATTTTCTCCA-GGACCAGTTGGTTGTGGCTTATGCC  48

seq1  TTTAATCCCAGGACTCCGAAGACAAAGGC-AGGCCGATGTCT-ATGAGTT  98
       ||||| ||||||||||||| |||||||| |||||||||||| |||||||
seq2  -TTAAT-CCAGGACTCCGAA-ACAAAGGCAAGGCCGATGTCTAATGAGTT  95

seq1  CGAA-GCCAGCCTGGTCTACAGAGTGAGGTCCTGGACAGCCAAGGCTATA  147
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCAAGCCTGGTCTACAGAGTGAGGTCCTGGACAGCCAAGGCTATA  145

seq1  CAGATGTAGAGAAACCTTGCCCCGCCCCCTGACACCCAC-ACAAAAAGAA  196
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGATGTAGAGAAACCTTGCCCCGCCCCCTGACACCCACAACAAAAAGAA  195

seq1  TTTCCCCAGGAACC-TAAGCCTGATGCAG-CCAACACTGAAGCTTAAC-T  243
      |||||||||||||| |||||||||||||| |||||||||||||||||| |
seq2  TTTCCCCAGGAACCTTAAGCCTGATGCAGCCCAACACTGAAGCTTAACTT  245

seq1  TGCCTCTGGCAAAGAGTCCACACAGTTCC-AACATCCTGTCAGACTTGAG  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCCTCTGGCAAAGAGTCCACACAGTTCCAAACATCCTGTCAGACTTGAG  295

seq1  GAGAGCCTGAAGCTGAGCAAGCAAGGTGACAGTGACAAGCAAAGAGTCGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTGAAGCTGAGCAAGCAAGGTGACAGTGACAAGCAAAGAGTCGT  345

seq1  GGCCTGAAGAGGACCACTTAGCTGTTTCCAGATCCTGCCTTCTGTTCAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAGAGGACCACTTAGCTGTTTCCAGATCCTGCCTTCTGTTCAAA  395

seq1  TATCACAACCTTGGGCTTGTGAGAATATGGCTCGGCTAGTAAAGGGGCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAACCTTGGGCTTGTGAGAATATGGCTCGGCTAGTAAAGGGGCAT  445

seq1  TGCCTCAAAGACTGACAACCTGAGTTCAATCCCTGGGCCCCACCGTGGAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAGACTGACAACCTGAGTTCAATCCCTGGGCCCCACCGTGGAA  495

seq1  GGAGAGAACTGACTTCTGAAAGTTGTCCTCTGACACCCCCCCACACACCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACTGACTTCTGAAAGTTGTCCTCTGACACCCCCCCACACACCA  545

seq1  GCTGTGTTGTGTGAGGTGTATACTCACAATAAATTGAATACATACATAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTGTGTGAGGTGTATACTCACAATAAATTGAATACATACATAAA  595

seq1  TAAGTGTGATAAAAATGTAATCCTTCACCTTGTATCAGGACCCTGAAACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGATAAAAATGTAATCCTTCACCTTGTATCAGGACCCTGAAACT  645

seq1  GGACTTGGGAATCAGCAGACCTCTTTACTCGCTCCTCTTCACTGTGCAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGGAATCAGCAGACCTCTTTACTCGCTCCTCTTCACTGTGCAGC  695

seq1  CCTTCCCTGCCTGTTTGTCGGTGTGTGTACCCTGTGCAGAAGCAGAGAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGCCTGTTTGTCGGTGTGTGTACCCTGTGCAGAAGCAGAGAAG  745

seq1  GAAGCTAGTGTCTTGCTGTCGAGCTCTCCACCATTTCCTGAATCGGGATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGTGTCTTGCTGTCGAGCTCTCCACCATTTCCTGAATCGGGATC  795

seq1  TCAAGGCTGCTCTGACAGCCAGTGAGTTCCCAACAGCCTACTGTTTGTAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTGCTCTGACAGCCAGTGAGTTCCCAACAGCCTACTGTTTGTAC  845

seq1  TCTCCTGGAGCAGCCTTACCATGACAACCATGTGCAGCCATGACCAGCGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGAGCAGCCTTACCATGACAACCATGTGCAGCCATGACCAGCGT  895

seq1  TTTCATGCGGGAGCTGGGGCTGGGGAGCCAAAGCCTTTCATTTGCATAGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCGGGAGCTGGGGCTGGGGAGCCAAAGCCTTTCATTTGCATAGC  945

seq1  ATAGCAAGCCATCTCTTAACCACCAATCCATCTTTTTCAGCCCATAGTGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGCCATCTCTTAACCACCAATCCATCTTTTTCAGCCCATAGTGC  995

seq1  CTTTGATGAGACAGGGTATCACTATGTAGCCGTGGCTGGCCTAGAGCTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGAGACAGGGTATCACTATGTAGCCGTGGCTGGCCTAGAGCTCA  1045

seq1  TCACATAGACCAGGTTTGCCAGAAATGAATTC  1074
      ||||||||||||||||||||||||||||||||
seq2  TCACATAGACCAGGTTTGCCAGAAATGAATTC  1077