BAC Information

Click to search

BAC

Clone NameB6Ng01-255E01
Chromosome8 (Build37)
Map Location 56,087,805 - 56,204,072
singlet/doubletdoublet
Overlap geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255E01.bB6Ng01-255E01.g
ACCGA061505GA061506
length7501,171
definitionB6Ng01-255E01.b B6Ng01-255E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,203,299 - 56,204,072)(56,087,805 - 56,088,988)
sequence
gaattcattctcattggacctttgcctgcttctctggctcatgcctgtct
aactttttctcactatcaatgttttatctctcttttctgtctctccttta
cacactatgtgtgattacccaatactcactttacaattagtgggtatact
gctggttttctccttggcttttgctgacaccaacatgtgaccttgcttgc
atccctaggaccctctaaagcatactttaattttaagtgccaatccatct
gagctcttaccctaatgagagacaatgtctgggaactttggatcagtttt
gttctcaatcctataggcaagttatttctctctctctctctctctctctc
tctctctctctctctctctctctctctgtctctctgtatttgtgtaactt
tcattttcttcatcacacatatcccaatagctgtaccacacacacacata
aacacacccaaaaacacaacaccataaaaaaggcacacacacgcaggcat
gcatgcacacacatatacatgcacattccccccccccacacaggactgtc
ttgattcaactgggttggtgcgcactgatctggggtctactggcctgact
gtctacagcctaacttatatgcctacatctctgtgagactcttagctatg
tctactatacatatcgcatctacatgcgacttcctaaactgtcttacgca
aactgttagtcacatagtgcaactgctattcgtgtatctgctccatgggt


gaattcccaagattgctgaagcacagcagaggcataaggttacagatcta
actctgagaagaatttaatgtctgtggctccaactcagtcccatatggga
aattcagacattatgtttcagttcatggaaatgttaatggaattgattaa
atggggctttctaaattacagaacattctgtctttagttgttcacacatt
gtcaaacatgatactttcctgtctgttggtctgacaggcagctctccctg
ttcctacagatggaaccttaacacagcatcataaagtaagctgcttcctg
accacagtcaggattaagacctcaaaccccttttatgttgagcaaagtta
gcaacagagaattatgtctagtataattcataagacaagaaagaggtctt
catctttaagttgtactttcgcatcagacatatataaacaagctcaaggg
ctgggtttcaagacacttcccttcattataatgatttaacactaggagtt
cttgatagtagtgcaggatttaaaatcagccattgtctttcagaagacat
gtctcttatgggccctttccttggtccaatggattctacttggtggaaac
ttcactgcaacataaagaaggctcttcatattctatgctaattgtagact
aactctacttctgtcaaacgtgggagaactccaaccagagagaacagcat
gtacaaaggaagagacttacaaataaacttgttacatcagggaaccattc
agtggctatgcactgacaagcttagattctgtcctcagggtaaccagaag
gcaaggaaagacttgaaagaacttcacagagtgggatttgacaatgttca
ttttttaaaaattcaggactggtaagagagcacaaatttcggaattgata
gaaaaaattctggaaatagcaaaatgtctgtatatagaaagttaacaatc
aattaggaagcatcactaggtaaacagatttatttgatatgcagagattg
gagagagagtggaggaggatttgggcatactctctagccttttgtaaatg
gaatattcctataatctgcaatgcaaatgtcaaggggggggaggacctga
cttgttctggtcgaggaatatttttatgacatctagctcgaaacctactg
ccgttatatagctagcacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_56203299_56204072
seq2: B6Ng01-255E01.b_47_796 (reverse)

seq1  ACCCATGGACCTAGATACA-GTTTAGCAGTTGGACAAAGAGACTAACAGT  49
      ||||||||| | ||||||| |  ||||||||| || | | ||||||||||
seq2  ACCCATGGAGC-AGATACACGAATAGCAGTTGCACTATGTGACTAACAGT  49

seq1  CTGCCTGCTGACAGTTTTGCAAAGACGCATGTAGGATCGTAGATG-GTAG  98
       ||| |   |||||||| |  ||| |||||||| |||   | |||  |||
seq2  TTGCGT-AAGACAGTTTAG-GAAGTCGCATGTA-GATGCGATATGTATAG  96

seq1  AAGAGATACCT-AGAGTCACAAAGAGAAGTAGGCACATCAATATGTTTGT  147
       ||| ||| || |||||| || ||||| ||||||| || | |  |  |||
seq2  TAGACATAGCTAAGAGTCTCACAGAGATGTAGGCATATAAGTTAGGCTGT  146

seq1  GGA-AGTCTGG-CAGTAGACTTGATATCAGTGCCCA-CAAACCAGTAGGA  194
       || |||| || ||||||||   | |||||||| || ||| |||||  ||
seq2  AGACAGTCAGGCCAGTAGACCCCAGATCAGTGCGCACCAACCCAGT-TGA  195

seq1  ATCAAGGCAGTTTGTGTGTGTGTGTGTGCCTGTGTGTGTGTGGGGGGGAA  244
      |||||| ||||                 ||||||||   | |||||||||
seq2  ATCAAGACAGT-----------------CCTGTGTG---GGGGGGGGGAA  225

seq1  TGTGCATGTATATGTGTGTGCATGCATGCCCTCATGTGTGTGTATTTTTT  294
      ||||||||||||||||||||||||||||||  | ||||||||   |||||
seq2  TGTGCATGTATATGTGTGTGCATGCATGCCTGCGTGTGTGTG-CCTTTTT  274

seq1  TATGGGTATGTGTCTGTGAGTGTGTTCATGTGTGTGTGTGGTACAACTAT  344
      |||||   ||||| | || ||||||| |||||||||||||||||| ||||
seq2  TATGGTGTTGTGTTTTTGGGTGTGTTTATGTGTGTGTGTGGTACAGCTAT  324

seq1  TTGTATGTGTGTGATGAAGAAAAGGAAAGTTACACGAGTACAGAGAGGCA  394
      | | || |||||||||||||||| ||||||||||| | ||||||||| ||
seq2  TGGGATATGTGTGATGAAGAAAATGAAAGTTACACAAATACAGAGAGACA  374

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGA  444
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG----AGAGAGAGA  420

seq1  GAGAAATAACTTGCCTATAGGATTGAGAACAAAACTGAACCAAAGTTCCC  494
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGAAATAACTTGCCTATAGGATTGAGAACAAAACTGATCCAAAGTTCCC  470

seq1  AGACATTGTCTCTCATTAGGGTAAGAGCTCAGATGGATTGGCACTTAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGTCTCTCATTAGGGTAAGAGCTCAGATGGATTGGCACTTAAAA  520

seq1  TTAAAGTATGCTTTAAAGGGTCCTAGGGATGCAAGCAAGGTCACATGTTG  594
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAAAGTATGCTTTAGAGGGTCCTAGGGATGCAAGCAAGGTCACATGTTG  570

seq1  GTGTCAGCAAAAGCCAAGGAGAAAACCAGCAGTATACCCACTAATTGTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCAAAAGCCAAGGAGAAAACCAGCAGTATACCCACTAATTGTAA  620

seq1  AGTGAGTATTGGGTAATCACACATAGTGTGTAAAGGAGAGACAGAAAAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATTGGGTAATCACACATAGTGTGTAAAGGAGAGACAGAAAAGA  670

seq1  GAGATAAAACATTGATAGTGAGAAAAAGTGAGACAGGCATGAGCCAGAGA  744
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGATAAAACATTGATAGTGAGAAAAAGTTAGACAGGCATGAGCCAGAGA  720

seq1  AGCAGGCAAAGGTCCAATGAGAATGAATTC  774
      ||||||||||||||||||||||||||||||
seq2  AGCAGGCAAAGGTCCAATGAGAATGAATTC  750


seq1: chr8_56087805_56088988
seq2: B6Ng01-255E01.g_64_1234

seq1  GAATTCCCAAGATTGCTGAAGCACAGCAGAGGCATAAGGTTACAGATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGATTGCTGAAGCACAGCAGAGGCATAAGGTTACAGATCTA  50

seq1  ACTCTGAGAAGAATTTAATGTCTGTGGCTCCAACTCAGTCCCATATGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGAAGAATTTAATGTCTGTGGCTCCAACTCAGTCCCATATGGGA  100

seq1  AATTCAGACATTATGTTTCAGTTCATGGAAATGTTAATGGAATTGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGACATTATGTTTCAGTTCATGGAAATGTTAATGGAATTGATTAA  150

seq1  ATGGGGCTTTCTAAATTACAGAACATTCTGTCTTTAGTTGTTCACACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTTTCTAAATTACAGAACATTCTGTCTTTAGTTGTTCACACATT  200

seq1  GTCAAACATGATACTTTCCTGTCTGTTGGTCTGACAGGCAGCTCTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACATGATACTTTCCTGTCTGTTGGTCTGACAGGCAGCTCTCCCTG  250

seq1  TTCCTACAGATGGAACCTTAACACAGCATCATAAAGTAAGCTGCTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGATGGAACCTTAACACAGCATCATAAAGTAAGCTGCTTCCTG  300

seq1  ACCACAGTCAGGATTAAGACCTCAAACCCCTTTTATGTTGAGCAAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTCAGGATTAAGACCTCAAACCCCTTTTATGTTGAGCAAAGTTA  350

seq1  GCAACAGAGAATTATGTCTAGTATAATTCATAAGACAAGAAAGAGGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAGAATTATGTCTAGTATAATTCATAAGACAAGAAAGAGGTCTT  400

seq1  CATCTTTAAGTTGTACTTTCGCATCAGACATATATAAACAAGCTCAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAAGTTGTACTTTCGCATCAGACATATATAAACAAGCTCAAGGG  450

seq1  CTGGGTTTCAAGACACTTCCCTTCATTATAATGATTTAACACTAGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTCAAGACACTTCCCTTCATTATAATGATTTAACACTAGGAGTT  500

seq1  CTTGATAGTAGTGCAGGATTTAAAATCAGCCATTGTCTTTCAGAAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAGTAGTGCAGGATTTAAAATCAGCCATTGTCTTTCAGAAGACAT  550

seq1  GTCTCTTATGGGCCCTTTCCTTGGTCCAATGGATTCTACTTGGTGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTATGGGCCCTTTCCTTGGTCCAATGGATTCTACTTGGTGGAAAC  600

seq1  TTCACTGCAACATAAAGAAGGCTCTTCATATTCTATGCTAATTGTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCAACATAAAGAAGGCTCTTCATATTCTATGCTAATTGTAGACT  650

seq1  AACTCTACTTCTGTCAAACGTGGGAGAACTCCAACCAGAGAGAACAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACTTCTGTCAAACGTGGGAGAACTCCAACCAGAGAGAACAGCAT  700

seq1  GTACAAAGGAAGAGACTTACAAATAAACTTGTTACATCAGGGAACCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGGAAGAGACTTACAAATAAACTTGTTACATCAGGGAACCATTC  750

seq1  AGTGGCTATGCACTGACAAGCTTAGATTCTGTCCTCAGGGTAACCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTATGCACTGACAAGCTTAGATTCTGTCCTCAGGGTAACCAGAAG  800

seq1  GCAAGGAAAGACTTGAAAGAACTTCACAGAGTGGGATTTGACAATGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAGACTTGAAAGAACTTCACAGAGTGGGATTTGACAATGTTCA  850

seq1  TTTTTTAAAAATTCAGGACTGGTAAGAGAGCACAAATTTCGGAATTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAATTCAGGACTGGTAAGAGAGCACAAATTTCGGAATTGATA  900

seq1  GAAAAAATTCTGGAAATAGCAAAATGTCTGTATATTAGAAAGTTAACAAT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAAAAATTCTGGAAATAGCAAAATGTCTGTATA-TAGAAAGTTAACAAT  949

seq1  CAATTAGGAAGCATCACTAGGTAAAACAGATTTAATTTGATATGCAGGAG  1000
      |||||||||||||||||||||| |||||||||| |||||||||||| |||
seq2  CAATTAGGAAGCATCACTAGGT-AAACAGATTT-ATTTGATATGCA-GAG  996

seq1  ATTTGAGAGAGAGTGAGGAAGGAATTTGGGCATACTCTCTAGCTTTTGGT  1050
      ||| |||||||||||  | ||| |||||||||||||||||||| ||| ||
seq2  ATTGGAGAGAGAGTGGAGGAGG-ATTTGGGCATACTCTCTAGCCTTTTGT  1045

seq1  AAATGGATATTTCCTATAATCTGCAATGCAAAAATGTCA--GGGGGGGAG  1098
      |||||||   |||||||||||||||||||  ||||||||  |||||||||
seq2  AAATGGAATATTCCTATAATCTGCAATGC--AAATGTCAAGGGGGGGGAG  1093

seq1  GACACTGACTTTGTTCTGGGTCGA-GAATATTTTTATAAACCATCTTAGC  1147
      ||| ||||| ||||||| |||||| |||||||||||| |  |||| ||||
seq2  GAC-CTGAC-TTGTTCT-GGTCGAGGAATATTTTTATGA--CATC-TAGC  1137

seq1  TCAGAACACTACTTGGCTGTTATATAGCTAACACTTT  1184
      || |||  |||||  || |||||||||||| ||||||
seq2  TC-GAAACCTACT--GCCGTTATATAGCTAGCACTTT  1171


| Home | SequenceCutter | Blast | Download |