BAC Information

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BAC

Clone NameB6Ng01-256C08
Chromosome8 (Build37)
Map Location 60,838,848 - 60,905,893
singlet/doubletdoublet
Overlap genenone
Upstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256C08.bB6Ng01-256C08.g
ACCGA062180GA062181
length1,1291,152
definitionB6Ng01-256C08.b B6Ng01-256C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,838,848 - 60,839,970)(60,904,736 - 60,905,893)
sequence
gaattcttacatgactcagtcaggactaatgagaactaagtctgtgggag
ctgaagacaggggaacttgtgaaattcctctttcctaatgaaggatttga
attgatgggctgctgcttttttctgtcttcgtgttaaggactgggctatg
tttccatagctgttacagcagttctgtgtttttaagagaggcagcattga
aaaagacagaagagtctagagatgccagctttatatgactggttcatttg
ctgtccaattttattatattaatagaatacatttaaaatgatgaagttgg
atttctgatacttgctgtcacgaatcatcataactgactcagttttaaat
tatgacagtatgagagtgtcataaggacattatatagttgatttaaaatt
tttataagcaatgacggatttcatcaaaacactgaaggttgatgctctca
gtgtaatacagtcatgtgctgtgttattatcgttttgttcctgtatgact
tcattcagaaaaaagaaagctgagctattaaaatattaatattcatctcc
ttagtaatgggtgtgaatatgtggaattccattagcatagtcttccattt
aactatgtcatttcctgcccccatatatttttatagcaatttaaaatacg
ccatatttagaatcatttagataactgctggagaacagactacatttgag
aacctacatttgcatttcttttgtaattaagtcatatgcaatgattctct
gaaatgatgtcattccacttttgatattttaacaactaggtctttttaaa
gattgccttaaagttaaaaacacattttttttgctatttttcatatttga
tttactttaaaattcctataacaaaaactttcaactagaaaatactttcc
actaaaagataattttcaaaaaggaatgacacagcttatgagccacagtc
cttcaggactgccaacaaatttttactaggcttctctcagattgctcaga
ttctctgttgctagctactaactttgtcacaaggtcattaggcagcagga
caacagagataattggtatatggtttgccatactctgtaattgccaattc
attggatcctaactgacctggtgctcaat

gaattcataggataagtttggtataaataaggaattaacattgtaaacat
agaataggccctctaggtctgtataaatagacaagaaagaactgtgaaga
tattcatatatatgtgagtataaatttctgtgctatagtttgccacatga
aggtgctttatttaacatgatatctgcacagaagagagacaatagattgt
gttaatactataactccttcacagaagaaaaccccatcttgatgtcataa
aactgaagtgtcatctgcagaagacatcatatctttccatgccatttaaa
tgttatttaaaataatgtttaatatgcagatattcaggaggattggcttg
aaatgctaatgggaggactttaaaaaatcaataggtggtgaaatttgtat
gtccaaagtgagtgaagtcaaccttattcttttctggtgtaagtggccac
cttgatcatttctgtttgattttacagagctttctttcttctgtttctaa
ggaccaatacaaattatatagtatctctgaataaagttgactatttaaaa
cttcaacagccagatatcttttaaattttactttagttttattataatta
atgttaactttctcaaattagccacctatctttcaaataaacataaatat
ttaaataaagataaaactctgtttttatagagtaaaaacctaatgaaatc
tgaggttgcaaatgaccaagtgaatggttttcagggttggctggtcgcag
atgatattagtctgtctacttattggtaattctcagcataatttaatttg
tcctgctcaacaatttattacaacggaatttttaccctgtggtattatag
tagaaaatgcatgacagcaaaataatgtggctttgagcattgtttgtgga
atatactcagacatatttttcagctgaatttctacaaaggaaaagaatca
atggtaccctaattttcctcccttcaaattactcttatctggggcacagt
agcatctttgctgtaccaatttaaattgtagtgtgattagtgaaacagat
gtcaaacaacagaaagaggtacagttagacagcagttggtgatctttctc
ttctatatgaacatgatgactggattatttatgcttggacagagagcctc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60838848_60839970
seq2: B6Ng01-256C08.b_46_1174

seq1  GAATTCTTACATGACTCAGTCAGGACTAATGAGAACTAAGTCTGTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATGACTCAGTCAGGACTAATGAGAACTAAGTCTGTGGGAG  50

seq1  CTGAAGACAGGGGAACTTGTGAAATTCCTCTTTCCTAATGAAGGATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGGGGAACTTGTGAAATTCCTCTTTCCTAATGAAGGATTTGA  100

seq1  ATTGATGGGCTGCTGCTTTTTTCTGTCTTCGTGTTAAGGACTGGGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGGCTGCTGCTTTTTTCTGTCTTCGTGTTAAGGACTGGGCTATG  150

seq1  TTTCCATAGCTGTTACAGCAGTTCTGTGTTTTTAAGAGAGGCAGCATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAGCTGTTACAGCAGTTCTGTGTTTTTAAGAGAGGCAGCATTGA  200

seq1  AAAAGACAGAAGAGTCTAGAGATGCCAGCTTTATATGACTGGTTCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGAAGAGTCTAGAGATGCCAGCTTTATATGACTGGTTCATTTG  250

seq1  CTGTCCAATTTTATTATATTAATAGAATACATTTAAAATGATGAAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATTTTATTATATTAATAGAATACATTTAAAATGATGAAGTTGG  300

seq1  ATTTCTGATACTTGCTGTCACGAATCATCATAACTGACTCAGTTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATACTTGCTGTCACGAATCATCATAACTGACTCAGTTTTAAAT  350

seq1  TATGACAGTATGAGAGTGTCATAAGGACATTATATAGTTGATTTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGTATGAGAGTGTCATAAGGACATTATATAGTTGATTTAAAATT  400

seq1  TTTATAAGCAATGACGGATTTCATCAAAACACTGAAGGTTGATGCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGCAATGACGGATTTCATCAAAACACTGAAGGTTGATGCTCTCA  450

seq1  GTGTAATACAGTCATGTGCTGTGTTATTATCGTTTTGTTCCTGTATGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATACAGTCATGTGCTGTGTTATTATCGTTTTGTTCCTGTATGACT  500

seq1  TCATTCAGAAAAAAGAAAGCTGAGCTATTAAAATATTAATATTCATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGAAAAAAGAAAGCTGAGCTATTAAAATATTAATATTCATCTCC  550

seq1  TTAGTAATGGGTGTGAATATGTGGAATTCCATTAGCATAGTCTTCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATGGGTGTGAATATGTGGAATTCCATTAGCATAGTCTTCCATTT  600

seq1  AACTATGTCATTTCCTGCCCCCATATATTTTTATAGCAATTTAAAATACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTCATTTCCTGCCCCCATATATTTTTATAGCAATTTAAAATACG  650

seq1  CCATATTTAGAATCATTTAGATAACTGCTGGAGAACAGACTACATTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAGAATCATTTAGATAACTGCTGGAGAACAGACTACATTTGAG  700

seq1  AACCTACATTTGCATTTCTTTTGTAATTAAGTCATATGCAATGATTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACATTTGCATTTCTTTTGTAATTAAGTCATATGCAATGATTCTCT  750

seq1  GAAATGATGTCATTCCACTTTTGATATTTTAACAACTAGGTCTTTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATGTCATTCCACTTTTGATATTTTAACAACTAGGTCTTTTTAAA  800

seq1  GATTGCCTTAAAGTTAAAAACACA-TTTTTTTGCTATTTTTCATATTTGA  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATTGCCTTAAAGTTAAAAACACATTTTTTTTGCTATTTTTCATATTTGA  850

seq1  TTTAC-TTAAAATTCCTATAACAAAAACTTTCAACTAGAAAATACTTTCC  898
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTAAAATTCCTATAACAAAAACTTTCAACTAGAAAATACTTTCC  900

seq1  ACTAAAAGATAATTTTCAAAAAGGAATGACACAGCTTATGAGCCACAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGATAATTTTCAAAAAGGAATGACACAGCTTATGAGCCACAGTC  950

seq1  CTTCAGGACTGCCAAC-AATTTTTACTAGGCTTCTCTCAGATTGCTCAGA  997
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTCAGGACTGCCAACAAATTTTTACTAGGCTTCTCTCAGATTGCTCAGA  1000

seq1  TTCTCTGTTGCTAGCTACTAACTTTGTCACAA-GTCATTA-GCAGCAAGG  1045
      |||||||||||||||||||||||||||||||| ||||||| ||||| |||
seq2  TTCTCTGTTGCTAGCTACTAACTTTGTCACAAGGTCATTAGGCAGC-AGG  1049

seq1  ACAACAGAGATAA-TGGTATAT-GTTTGCCAATACTTCTGTTAATTTGCA  1093
      ||||||||||||| |||||||| ||||||| |||| |||| |||||  ||
seq2  ACAACAGAGATAATTGGTATATGGTTTGCC-ATAC-TCTG-TAATTGCCA  1096

seq1  ATTCATTTGGATC--TACTGAC--TGTGCTCAAT  1123
      ||||| |||||||   ||||||   |||||||||
seq2  ATTCA-TTGGATCCTAACTGACCTGGTGCTCAAT  1129


seq1: chr8_60904736_60905893
seq2: B6Ng01-256C08.g_66_1217 (reverse)

seq1  GAGAG---CTCTGTCCAAGCATTAAAATAATCAATTTCCTTTAAATTGTT  47
      |||||   ||||||||||||||  |||||||| | |  | | |   ||||
seq2  GAGAGGCTCTCTGTCCAAGCAT--AAATAATCCAGT--CATCA---TGTT  43

seq1  CAATATTAGAGAGAAAGATCACC-ACTGCTGTCCTAACTGTCCCTCTTTC  96
      | ||||   |||||||||||||| |||||||| |||||||| ||||||||
seq2  C-ATATAGAAGAGAAAGATCACCAACTGCTGT-CTAACTGTACCTCTTTC  91

seq1  TGTTGTTTGACATCTGTTTCACTAATCACACTTACAATTTTAAATTGGTA  146
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  TGTTGTTTGACATCTGTTTCACTAATCACAC-TACAA-TTTAAATTGGTA  139

seq1  CAGCAAAGATGCTACTGTGCCCCAGATAAGAGTAATTTGAAGGGAGGAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGATGCTACTGTGCCCCAGATAAGAGTAATTTGAAGGGAGGAAA  189

seq1  ATTTAGGTACCATTGATTCTTTTCCTTTGTAGAAATTCAGCTG-AAAATA  245
      |||  |||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTAGGGTACCATTGATTCTTTTCCTTTGTAGAAATTCAGCTGAAAAATA  239

seq1  TGTCTGAGTATATTCCACAAACAATGCTCAAAGCCACATTATTTTGCTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTATATTCCACAAACAATGCTCAAAGCCACATTATTTTGCTGT  289

seq1  CATGCATTTTCTACTATAATACCACAGGGTAAAAATTCCGTTGTAATAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTTTCTACTATAATACCACAGGGTAAAAATTCCGTTGTAATAAA  339

seq1  TTGTTGAGCAGGACAAATTAAATTATGCTGAGAATTACCAATAAGTAGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGCAGGACAAATTAAATTATGCTGAGAATTACCAATAAGTAGAC  389

seq1  AGACTAATATCATCTGCGACCAGCCAACCCTGAAAACCATTCACTTGGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATATCATCTGCGACCAGCCAACCCTGAAAACCATTCACTTGGTC  439

seq1  ATTTGCAACCTCAGATTTCATTAGGTTTTTACTCTATAAAAACAGAGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAACCTCAGATTTCATTAGGTTTTTACTCTATAAAAACAGAGTTT  489

seq1  TATCTTTATTTAAATATTTATGTTTATTTGAAAGATAGGTGGCTAATTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATTTAAATATTTATGTTTATTTGAAAGATAGGTGGCTAATTTG  539

seq1  AGAAAGTTAACATTAATTATAATAAAACTAAAGTAAAATTTAAAAGATAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTAACATTAATTATAATAAAACTAAAGTAAAATTTAAAAGATAT  589

seq1  CTGGCTGTTGAAGTTTTAAATAGTCAACTTTATTCAGAGATACTATATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTGAAGTTTTAAATAGTCAACTTTATTCAGAGATACTATATAA  639

seq1  TTTGTATTGGTCCTTAGAAACAGAAGAAAGAAAGCTCTGTAAAATCAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTGGTCCTTAGAAACAGAAGAAAGAAAGCTCTGTAAAATCAAAC  689

seq1  AGAAATGATCAAGGTGGCCACTTACACCAGAAAAGAATAAGGTTGACTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGATCAAGGTGGCCACTTACACCAGAAAAGAATAAGGTTGACTTC  739

seq1  ACTCACTTTGGACATACAAATTTCACCACCTATTGATTTTTTAAAGTCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTGGACATACAAATTTCACCACCTATTGATTTTTTAAAGTCCT  789

seq1  CCCATTAGCATTTCAAGCCAATCCTCCTGAATATCTGCATATTAAACATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGCATTTCAAGCCAATCCTCCTGAATATCTGCATATTAAACATT  839

seq1  ATTTTAAATAACATTTAAATGGCATGGAAAGATATGATGTCTTCTGCAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATAACATTTAAATGGCATGGAAAGATATGATGTCTTCTGCAGA  889

seq1  TGACACTTCAGTTTTATGACATCAAGATGGGGTTTTCTTCTGTGAAGGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTCAGTTTTATGACATCAAGATGGGGTTTTCTTCTGTGAAGGAG  939

seq1  TTATAGTATTAACACAATCTATTGTCTCTCTTCTGTGCAGATATCATGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATTAACACAATCTATTGTCTCTCTTCTGTGCAGATATCATGTT  989

seq1  AAATAAAGCACCTTCATGTGGCAAACTATAGCACAGAAATTTATACTCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCACCTTCATGTGGCAAACTATAGCACAGAAATTTATACTCAC  1039

seq1  ATATATATGAATATCTTCACAGTTCTTTCTTGTCTATTTATACAGACCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGAATATCTTCACAGTTCTTTCTTGTCTATTTATACAGACCTA  1089

seq1  GAGGGCCTATTCTATGTTTACAATGTTAATTCCTTATTTATACCAAACTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTATTCTATGTTTACAATGTTAATTCCTTATTTATACCAAACTT  1139

seq1  ATCCTATGAATTC  1158
      |||||||||||||
seq2  ATCCTATGAATTC  1152


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