BAC Information

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BAC

Clone NameB6Ng01-259L17
Chromosome8 (Build37)
Map Location 114,241,199 - 114,378,624
singlet/doubletdoublet
Overlap geneBcar1, Cfdp1
Upstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1
Downstream geneTmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259L17.bB6Ng01-259L17.g
ACCGA064839GA064840
length1,1621,119
definitionB6Ng01-259L17.b B6Ng01-259L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,241,199 - 114,242,373)(114,377,507 - 114,378,624)
sequence
gaattcaaaccccaaaggggcagacagtgcacctctcagaggcaagccag
gagcacccctgccttgccagcagccatctgggccttgtgtagtcagagct
gcaagcccaggccagaggctctcacctcagcccccagtggttagtctaac
gtcaaagggagctcctattcctacacccgagtcaggtgacagtaagcagc
tatgttggctagctaacatttttccgttaggaattttctgttagcaaagg
cttcgctactgctcaacagagaaagcagggaagaagagcagctcattatg
gaaatggattcatcagagagctcctgagcccagctaatcactactccact
gctctctgcacctgatgccccattagcaggtcctggagggaggacacaga
cagacacacacacagacagacagacagaacgcacgttaggctgggctgga
gagagctgtttttctttctagcctatacctccccacaagtttgaaggaag
aggaagactgaacccagaagcatatcccagcttgctggttctaaatgggg
atgaaacttcccgagtagccctgactctacagggatcaaggcaggaatcc
aagcagcaggagtcaagtagggggaacaaagacaagaggagtctctcttg
gctgttcattctgggttggggccccacccctccagacagtttggctgctt
atctttcccactgcaaaacggacaacatctcccgagcacgccagctgctg
gcttggttgctcactctctgtccctcctctgggaatggagtgccaaaggg
acatcaaggggcctgacaagtgcctacctggctgagcatcaccaccctct
gctggccaggaggtgctgctgcccagacagacacaccttagttacttgcg
tttctctcccctggcagcgtagttcctgacccaggaacgttccttcaaaa
gtggccttgcagacagacagatgccttccctgcgtgtttaggctctgtcc
ctcagcctttggcagaggctctgggattctggacttgctttctccaccta
cactgcagatgcattcttcagaacgagctctccaggtccaccttatcatt
actcccacagttattacacgctattgcactgttcccctcaggcctggaac
caggccatagtt
ttctagcgagagaattgaatcaaaaaggcagagcctcagccttgctcaaa
agttgatgggaactttagcatctatctattcagctttcagtttttactcg
ctgagcatatccgggagcgacattttaatctctgattttagagttagaaa
aaatattagcttgtgagcaaatttcaaaataaaaagacaagtataaagag
aaagtactatttccgcagataagccattctccattaaggacgcacggtac
cgttgaaaactacaagccccagcatgcatcgcttctgagaggtgggggtc
cggaatcccacaagggcccggtgagtgtagactgaccaatcgcagcagcc
ggaagtgtcgtctctgaccacgtggcactgcctgcgcatgtgcgctcgcc
tctagggcggccctagctgctggtcctgtacccctatggtctcgccctat
atctagcttcgctattttggggcagtggccgcagtcgtgtgggtagcagg
ccccaagtgacagcagcatggaggaattcgactccgaagacttctccaca
tcggacgaggatgaggactacttgccgtccggtgagcgattcggcctgag
gcgaaaggagggtggtttccacgcttcacacctcactcgagactctcccg
gacggtccccagggcgtgggcctcgtgatcgcgaggtccccacggcccgt
gggctccggagttcgggttatcaggaccccggccctcaggcggcctggaa
cacgcatgtgtcggttctgcatagctgctgtcctgggccgccgccccctc
ggagcgcgggaaacagggcgcgtgaagcccgcaggctgagcgtactacct
accttaccggctggttctggaagccgacccggacattggagattgttttt
agggaattgccagcttcctttcacgtccgaactcaattgtccgcttctgg
gttcggaaagggatcgcctgttagaaagttgatgtgaatatgtgtttttc
ccctctttgcaagagctacccatcgtcttcttttaggactttttcaaagt
ttattttttgaagatttatgcacgatatcagtgtttttactgaattgtct
gtctgatcatgtacatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114241199_114242373
seq2: B6Ng01-259L17.b_48_1209

seq1  GAATTCAAACCCCAAAGGGGCAGACAGTGCACCTCTCAGAGGCAAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCCAAAGGGGCAGACAGTGCACCTCTCAGAGGCAAGCCAG  50

seq1  GAGCACCCCTGCCTTGCCAGCAGCCATCTGGGCCTTGTGTAGTCAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCCTGCCTTGCCAGCAGCCATCTGGGCCTTGTGTAGTCAGAGCT  100

seq1  GCAAGCCCAGGCCAGAGGCTCTCACCTCAGCCCCCAGTGGTTAGTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCCAGGCCAGAGGCTCTCACCTCAGCCCCCAGTGGTTAGTCTAAC  150

seq1  GTCAAAGGGAGCTCCTATTCCTACACCCGAGTCAGGTGACAGTAAGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGGGAGCTCCTATTCCTACACCCGAGTCAGGTGACAGTAAGCAGC  200

seq1  TATGTTGGCTAGCTAACATTTTTCCGTTAGGAATTTTCTGTTAGCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGCTAGCTAACATTTTTCCGTTAGGAATTTTCTGTTAGCAAAGG  250

seq1  CTTCGCTACTGCTCAACAGAGAAAGCAGGGAAGAAGAGCAGCTCATTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTACTGCTCAACAGAGAAAGCAGGGAAGAAGAGCAGCTCATTATG  300

seq1  GAAATGGATTCATCAGAGAGCTCCTGAGCCCAGCTAATCACTACTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGATTCATCAGAGAGCTCCTGAGCCCAGCTAATCACTACTCCACT  350

seq1  GCTCTCTGCACCTGATGCCCCATTAGCAGGTCCTGGAGGGAGGACACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGCACCTGATGCCCCATTAGCAGGTCCTGGAGGGAGGACACAGA  400

seq1  CAGACACACACACAGACAGACAGACAGAACGCACGTTAGGCTGGGCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACAGACAGACAGACAGAACGCACGTTAGGCTGGGCTGGA  450

seq1  GAGAGCTGTTTTTCTTTCTAGCCTATACCTCCCCACAAGTTTGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTTTTTCTTTCTAGCCTATACCTCCCCACAAGTTTGAAGGAAG  500

seq1  AGGAAGACTGAACCCAGAAGCATATCCCAGCTTGCTGGTTCTAAATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACTGAACCCAGAAGCATATCCCAGCTTGCTGGTTCTAAATGGGG  550

seq1  ATGAAACTTCCCGAGTAGCCCTGACTCTACAGGGATCAAGGCAGGAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTTCCCGAGTAGCCCTGACTCTACAGGGATCAAGGCAGGAATCC  600

seq1  AAGCAGCAGGAGTCAAGTAGGGGGAACAAAGACAAGAGGAGTCTCTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAGGAGTCAAGTAGGGGGAACAAAGACAAGAGGAGTCTCTCTTG  650

seq1  GCTGTTCATTCTGGGTTGGGGCCCCACCCCTCCAGACAGTTTGGCTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCATTCTGGGTTGGGGCCCCACCCCTCCAGACAGTTTGGCTGCTT  700

seq1  ATCTTTCCCACTGCAAAACGGACAACATCTCCCGAGCACGCCAGCTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCCACTGCAAAACGGACAACATCTCCCGAGCACGCCAGCTGCTG  750

seq1  GCTTGGTTGCTCACTCTCTGTCCCTCCTCTGGGAATGGAGTGCCAAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTGCTCACTCTCTGTCCCTCCTCTGGGAATGGAGTGCCAAAGGG  800

seq1  ACATCAAGGGGCCTGACAAGTGCCTACCTGGCTGAGCATCACCACCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGGGGCCTGACAAGTGCCTACCTGGCTGAGCATCACCACCCTCT  850

seq1  GCTGGCCAGGAGGTGCTGCTGCCCAGACAGACACACCTTAGTTACTTGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGGAGGTGCTGCTGCCCAGACAGACACACCTTAGTTACTTGCG  900

seq1  TTTCTCTCCCCTGGCAAGCGTAGTTCCTGACCCAGGAACGTTCCTTCAAA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCCCTGGC-AGCGTAGTTCCTGACCCAGGAACGTTCCTTCAAA  949

seq1  AGTGGCCTTGCAGACAGACAGATGCCTTCCCTGCGTGTTTAGGCTCTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTTGCAGACAGACAGATGCCTTCCCTGCGTGTTTAGGCTCTGTC  999

seq1  CCTCAGCCTTTGGCAGAGGCTCCTGGGGATTCTGGACCTTGCTTCCTCCA  1050
      ||||||||||||||||||||||   ||||||||||| ||||||| |||||
seq2  CCTCAGCCTTTGGCAGAGGCTC--TGGGATTCTGGA-CTTGCTTTCTCCA  1046

seq1  CCTACACTGCAGATGGCCATTCTTCCAGGAACGAGCTCTCCCAGGTCCAC  1100
      |||||||||||||||  ||||||||   ||||||||||| ||||||||| 
seq2  CCTACACTGCAGATG--CATTCTTC--AGAACGAGCTCT-CCAGGTCCA-  1090

seq1  CCTTATCATTTACTCCCACAGGTAATACACGCTATGGCACTG-TCCCCTC  1149
      |||||||| |||||||||||| || |||||||||| |||||| |||||||
seq2  CCTTATCA-TTACTCCCACAGTTATTACACGCTATTGCACTGTTCCCCTC  1139

seq1  AGCGCCTGGAACAAGGGGTCATAGTT  1175
      || ||||||||| |  || |||||||
seq2  AG-GCCTGGAACCA--GGCCATAGTT  1162

seq1: chr8_114377507_114378624
seq2: B6Ng01-259L17.g_76_1193 (reverse)

seq1  TGATGTACAGAGACAGACAGAC-ATTCAGGAAAAAACACTGATATACGTG  49
      |||||||||    ||||||||| ||||| | |||||||||||||| ||||
seq2  TGATGTACATGATCAGACAGACAATTCA-GTAAAAACACTGATAT-CGTG  48

seq1  CCATAAAATCTCTAAAAATAAAACTTTTGAAAAAGTTCTTAAAAGAGGAC  99
       ||||||   || |||||||||   |||||||||| || ||||||| |||
seq2  -CATAAATCTTCAAAAAATAAA--CTTTGAAAAAG-TCCTAAAAGAAGAC  94

seq1  GATGGGTAGCTCCTGCAAAGAGGG--AAAACACATTATCACATCAACTTT  147
      |||||||||||| |||||||||||  |||||||||  |||||||||||||
seq2  GATGGGTAGCTCTTGCAAAGAGGGGAAAAACACATATTCACATCAACTTT  144

seq1  CTAACAAGCCGATCCC-TTCCGAACCCAGAGGCGGACAATTGAGTTTCGG  196
      ||||| || ||||||| ||||||||||||| ||||||||||||| |||||
seq2  CTAAC-AGGCGATCCCTTTCCGAACCCAGAAGCGGACAATTGAG-TTCGG  192

seq1  ACGTG-AAGGAAGCTGGCAATTCCCTAAAAACAATCTCCAATGTCCGGGT  245
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAAAGGAAGCTGGCAATTCCCTAAAAACAATCTCCAATGTCCGGGT  242

seq1  CGGCTTCCAGAACCAGCCGGT-AGGTAGGTAGTACGCTCAGCCTGCGGGC  294
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGGCTTCCAGAACCAGCCGGTAAGGTAGGTAGTACGCTCAGCCTGCGGGC  292

seq1  TTCACGCG-CCTG-TTCCCGCGCTCCGAGGGGGCGGCGGCCCAGGACAGC  342
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TTCACGCGCCCTGTTTCCCGCGCTCCGAGGGGGCGGCGGCCCAGGACAGC  342

seq1  AGCTATGCAGAACCGACACATGCGTGTTCCAGGCCGCCTGAGGGCCGGGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCAGAACCGACACATGCGTGTTCCAGGCCGCCTGAGGGCCGGGG  392

seq1  TCCTGATAACCCGAACTCCGGAGCCCACGGGCCGTGGGGACCTCGCGATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATAACCCGAACTCCGGAGCCCACGGGCCGTGGGGACCTCGCGATC  442

seq1  ACGAGGCCCACGCCCTGGGGACCGTCCGGGAGAGTCTCGAGTGAGGTGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCCCACGCCCTGGGGACCGTCCGGGAGAGTCTCGAGTGAGGTGTG  492

seq1  AAGCGTGGAAACCACCCTCCTTTCGCCTCAGGCCGAATCGCTCACCGGAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGGAAACCACCCTCCTTTCGCCTCAGGCCGAATCGCTCACCGGAC  542

seq1  GGCAAGTAGTCCTCATCCTCGTCCGATGTGGAGAAGTCTTCGGAGTCGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTAGTCCTCATCCTCGTCCGATGTGGAGAAGTCTTCGGAGTCGAA  592

seq1  TTCCTCCATGCTGCTGTCACTTGGGGCCTGCTACCCACACGACTGCGGCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATGCTGCTGTCACTTGGGGCCTGCTACCCACACGACTGCGGCC  642

seq1  ACTGCCCCAAAATAGCGAAGCTAGATATAGGGCGAGACCATAGGGGTACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCAAAATAGCGAAGCTAGATATAGGGCGAGACCATAGGGGTACA  692

seq1  GGACCAGCAGCTAGGGCCGCCCTAGAGGCGAGCGCACATGCGCAGGCAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCAGCTAGGGCCGCCCTAGAGGCGAGCGCACATGCGCAGGCAGT  742

seq1  GCCACGTGGTCAGAGACGACACTTCCGGCTGCTGCGATTGGTCAGTCTAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGGTCAGAGACGACACTTCCGGCTGCTGCGATTGGTCAGTCTAC  792

seq1  ACTCACCGGGCCCTTGTGGGATTCCGGACCCCCACCTCTCAGAAGCGATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCGGGCCCTTGTGGGATTCCGGACCCCCACCTCTCAGAAGCGATG  842

seq1  CATGCTGGGGCTTGTAGTTTTCAACGGTACCGTGCGTCCTTAATGGAGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGGGCTTGTAGTTTTCAACGGTACCGTGCGTCCTTAATGGAGAA  892

seq1  TGGCTTATCTGCGGAAATAGTACTTTCTCTTTATACTTGTCTTTTTATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATCTGCGGAAATAGTACTTTCTCTTTATACTTGTCTTTTTATTT  942

seq1  TGAAATTTGCTCACAAGCTAATATTTTTTCTAACTCTAAAATCAGAGATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGCTCACAAGCTAATATTTTTTCTAACTCTAAAATCAGAGATT  992

seq1  AAAATGTCGCTCCCGGATATGCTCAGCGAGTAAAAACTGAAAGCTGAATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCGCTCCCGGATATGCTCAGCGAGTAAAAACTGAAAGCTGAATA  1042

seq1  GATAGATGCTAAAGTTCCCATCAACTTTTGAGCAAGGCTGAGGCTCTGCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGCTAAAGTTCCCATCAACTTTTGAGCAAGGCTGAGGCTCTGCC  1092

seq1  TTTTTGATTCAATTCTCTCGCTAGAA  1118
      ||||||||||||||||||||||||||
seq2  TTTTTGATTCAATTCTCTCGCTAGAA  1118