BAC Information

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BAC

Clone NameB6Ng01-261B21
Chromosome8 (Build37)
Map Location 52,543,846 - 52,700,248
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261B21.bB6Ng01-261B21.g
ACCGA065867GA065868
length1,1921,126
definitionB6Ng01-261B21.b B6Ng01-261B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,699,056 - 52,700,248)(52,543,846 - 52,544,975)
sequence
gaattctctcaggcttttaaactaaaactactgtttagcttgaaaagttt
atttcacttaataagactggtgtcttatcctatggatgtaaatttaaagt
gcaatatgtattgtaacaatatagtaaggacaaaggaaataagtgtgttt
taacatgctactagctgtgttacaaaggaaaccaaccagaggaggattgt
tctttctgtttttattttgaccgtgtgtctagttacatatagagatagaa
agattgttaaagttgacaggaattgtgtaaaaggggctataatgtttgca
aagtaattcttacaaataattaagaaccatattctgacggaataatgtga
gcaaaagcttatcatcagaaacactgagtaaatatagtttgtcactgcag
atgaaactccgttactagagtcttgttttaagtattcaaaaaattgtaat
tttacgtgaaagttttgtggggttttgtttgtctgtttgttcctcccttg
aaaccactcaggacagaatctgtatggaattcattgtaaaatacctacta
tattttaagtaggacatgtagcaaacaaaaacagatgtttgtcagaagag
tatttgttagtgagttgctaaaggaggctgactggtaggcagaagaaatc
tggtatgactgtagatttgctgcttaccagatttgtacacaactgaaaga
ttagtactgtacaatctagcagtggcttcgctggcttctttgtctgttgc
ctcacatatatcagaaacaaaggaagcacctggggctaggttatgttcag
tctcacatgcttactaggagtatccaggagtctggagaaacttgtggtaa
ttccatttgacaaagaaaatctgagagtcgttaagctgtaactgtaatgc
ggactgtactctaactacatctaaatccctttcctgttaatatttcacaa
cccttagccaagagaaggtttctttgtcacatgtccagattcccatccac
agtcaaaagattggattctttcagtgtaaatagaatagaatcccaaactt
ggggcacctgatatcctatttggtgacatcctgctctaacacccacttgt
ttacaatttctcaatctgaagcatccttcatcccctcgaagtccagtgct
gcaataggcatggagagagcacctttccccagagtctttaaa

gaattctaaggaaaactctgtttaatggaacattgagatgaggcaatagt
aaggagcacagtgagaagacagctgggactgcaattgtgaagtcattgac
atagaatactgagggcagtgtggaaagacacattgaagcaacttcttaca
cactgcttcccctgaattgaatgattctcccttagaaggaataagaaaag
catgtagaactcaaaaagctaagaaaacctataagcctcagcaaacttga
cagcttgaatgactgagaagacttcatcccaaggttacagaaacttctaa
agcacagcagtggagagcagattttgcctctatgttgtacagtgagatct
agtgattctggtatcctcagagtcacctctgctcttaaggagcttcagga
aaatgcagatacgtttatgtcatatcactgactctctaagtaaaattgat
ataattattgctctaatgagctagactttggttttacatcactgacctat
aggagatggttgggcatttcttcaaacctccaaggaaattcacataaccc
tgatataaaatataaactatatttaagggaaaggaagggcactttataaa
catatccttaattttacaaataatgtaaatataatgatttatacttctgc
ctggatttataaaattaaacagcattcattcaagactaatagctttgaca
tctcaaagttacttattgtgtgtgtctatttttgttttctatttttacgt
aagatgagttatttgaagctattttataaatatgtcattttaattacatt
ttattaatgtttacctttataactggattgataaattcatcaagttgaat
gaaaatttcttttagtctgtttatgtctggtaacaatgtagattgattgt
gttcagcttttttaattaaacacctattaattcaataaaatttacagaat
tttttattttcagatgtctctggcattatgcttgtaagaaagtgaaaaaa
agaaagtatttcatttttatatcaagcacatgccagagacacttacaaga
catatgccccttcttcatatcaatacatgcagtgtttgacattcttttaa
aggtttaatactgtcaccaaggctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52699056_52700248
seq2: B6Ng01-261B21.b_43_1234 (reverse)

seq1  TTTAAAGACT----GGGATGGTGCTCT---CATG-CTA-TGCAGCACTTG  41
      ||||||||||    || | ||||||||   |||| ||| |||||||||  
seq2  TTTAAAGACTCTGGGGAAAGGTGCTCTCTCCATGCCTATTGCAGCACT--  48

seq1  GGGACATCTGAAAGGGATG-AGGATGCTTTCCAGATTTGAGAAA-TGTAA  89
       |||| ||   | |||||| |||||||||  |||| |||||||| |||||
seq2  -GGACTTC--GAGGGGATGAAGGATGCTT--CAGA-TTGAGAAATTGTAA  92

seq1  AC-AGTGGGTGTTAGAAGGCAGAATGTCA-CAAATAGGAATATCAGGTGG  137
      || |||||||||||||  |||| |||||| |||||||| ||||||||| |
seq2  ACAAGTGGGTGTTAGA--GCAGGATGTCACCAAATAGG-ATATCAGGT-G  138

seq1  CCCCAAGGTTTGGGATCCTATTCTATTTACACCTGAAAGAATCCAATTCT  187
      |||||| ||||||||| |||||||||||||| |||||||||||||| |||
seq2  CCCCAA-GTTTGGGATTCTATTCTATTTACA-CTGAAAGAATCCAA-TCT  185

seq1  TTTGACTGTGGAT-GGAATCTGGACATGTGACAAAGAAACCTTCTCTTGG  236
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTGGATGGGAATCTGGACATGTGACAAAGAAACCTTCTCTTGG  235

seq1  CTAAGGTTTGTGAAATATTAACAGGAAAGGGATTTAGATGTAGTTAGAGT  286
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTTGTGAAATATTAACAGGAAAGGGATTTAGATGTAGTTAGAGT  285

seq1  ACAGTCCGCATTACAGTTACAGCTTAACGACTCTCAGATTTTCTTTGTCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCGCATTACAGTTACAGCTTAACGACTCTCAGATTTTCTTTGTCA  335

seq1  AATGGAATTACCACAAGTTTCTCCAGACTCCTGGATACTCCTAGTAAGCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATTACCACAAGTTTCTCCAGACTCCTGGATACTCCTAGTAAGCA  385

seq1  TGTGAGACTGAACATAACCTAGCCCCAGGTGCTTCCTTTGTTTCTGATAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACTGAACATAACCTAGCCCCAGGTGCTTCCTTTGTTTCTGATAT  435

seq1  ATGTGAGGCAACAGACAAAGAAGCCAGCGAAGCCACTGCTAGATTGTACA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGCAACAGACAAAGAAGCCAGCGAAGCCACTGCTAGATTGTACA  485

seq1  GTACTAATCTTTCAGTTGTGTACAAATCTGGTAAGCAGCAAATCTACAGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATCTTTCAGTTGTGTACAAATCTGGTAAGCAGCAAATCTACAGT  535

seq1  CATACCAGATTTCTTCTGCCTACCAGTCAGCCTCCTTTAGCAACTCACTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAGATTTCTTCTGCCTACCAGTCAGCCTCCTTTAGCAACTCACTA  585

seq1  ACAAATACTCTTCTGACAAACATCTGTTTTTGTTTGCTACATGTCCTACT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTCTTCTGACAAACATCTGTTTTTGTTTGCTACATGTCCTACT  635

seq1  TAAAATATAGTAGGTATTTTACAATGAATTCCATACAGATTCTGTCCTGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAGTAGGTATTTTACAATGAATTCCATACAGATTCTGTCCTGA  685

seq1  GTGGTTTCAAGGGAGGAACAAACAGACAAACAAAACCCCACAAAACTTTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCAAGGGAGGAACAAACAGACAAACAAAACCCCACAAAACTTTC  735

seq1  ACGTAAAATTACAATTTTTTGAATACTTAAAACAAGACTCTAGTAACGGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAAATTACAATTTTTTGAATACTTAAAACAAGACTCTAGTAACGGA  785

seq1  GTTTCATCTGCAGTGACAAACTATATTTACTCAGTGTTTCTGATGATAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCTGCAGTGACAAACTATATTTACTCAGTGTTTCTGATGATAAG  835

seq1  CTTTTGCTCACATTATTCCGTCAGAATATGGTTCTTAATTATTTGTAAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCACATTATTCCGTCAGAATATGGTTCTTAATTATTTGTAAGA  885

seq1  ATTACTTTGCAAACATTATAGCCCCTTTTACACAATTCCTGTCAACTTTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTGCAAACATTATAGCCCCTTTTACACAATTCCTGTCAACTTTA  935

seq1  ACAATCTTTCTATCTCTATATGTAACTAGACACACGGTCAAAATAAAAAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTTTCTATCTCTATATGTAACTAGACACACGGTCAAAATAAAAAC  985

seq1  AGAAAGAACAATCCTCCTCTGGTTGGTTTCCTTTGTAACACAGCTAGTAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACAATCCTCCTCTGGTTGGTTTCCTTTGTAACACAGCTAGTAG  1035

seq1  CATGTTAAAACACACTTATTTCCTTTGTCCTTACTATATTGTTACAATAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAAAACACACTTATTTCCTTTGTCCTTACTATATTGTTACAATAC  1085

seq1  ATATTGCACTTTAAATTTACATCCATAGGATAAGACACCAGTCTTATTAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCACTTTAAATTTACATCCATAGGATAAGACACCAGTCTTATTAA  1135

seq1  GTGAAATAAACTTTTCAAGCTAAACAGTAGTTTTAGTTTAAAAGCCTGAG  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAAACTTTTCAAGCTAAACAGTAGTTTTAGTTTAAAAGCCTGAG  1185

seq1  AGAATTC  1193
      |||||||
seq2  AGAATTC  1192


seq1: chr8_52543846_52544975
seq2: B6Ng01-261B21.g_66_1191

seq1  GAATTCTAAGGAAAACTCTGTTTAATGGAACATTGAGATGAGGCAATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGAAAACTCTGTTTAATGGAACATTGAGATGAGGCAATAGT  50

seq1  AAGGAGCACAGTGAGAAGACAGCTGGGACTGCAATTGTGAAGTCATTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCACAGTGAGAAGACAGCTGGGACTGCAATTGTGAAGTCATTGAC  100

seq1  ATAGAATACTGAGGGCAGTGTGGAAAGACACATTGAAGCAACTTCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATACTGAGGGCAGTGTGGAAAGACACATTGAAGCAACTTCTTACA  150

seq1  CACTGCTTCCCCTGAATTGAATGATTCTCCCTTAGAAGGAATAAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTCCCCTGAATTGAATGATTCTCCCTTAGAAGGAATAAGAAAAG  200

seq1  CATGTAGAACTCAAAAAGCTAAGAAAACCTATAAGCCTCAGCAAACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAACTCAAAAAGCTAAGAAAACCTATAAGCCTCAGCAAACTTGA  250

seq1  CAGCTTGAATGACTGAGAAGACTTCATCCCAAGGTTACAGAAACTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAATGACTGAGAAGACTTCATCCCAAGGTTACAGAAACTTCTAA  300

seq1  AGCACAGCAGTGGAGAGCAGATTTTGCCTCTATGTTGTACAGTGAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCAGTGGAGAGCAGATTTTGCCTCTATGTTGTACAGTGAGATCT  350

seq1  AGTGATTCTGGTATCCTCAGAGTCACCTCTGCTCTTAAGGAGCTTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTGGTATCCTCAGAGTCACCTCTGCTCTTAAGGAGCTTCAGGA  400

seq1  AAATGCAGATACGTTTATGTCATATCACTGACTCTCTAAGTAAAATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGATACGTTTATGTCATATCACTGACTCTCTAAGTAAAATTGAT  450

seq1  ATAATTATTGCTCTAATGAGCTAGACTTTGGTTTTACATCACTGACCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTGCTCTAATGAGCTAGACTTTGGTTTTACATCACTGACCTAT  500

seq1  AGGAGATGGTTGGGCATTTCTTCAAACCTCCAAGGAAATTCACATAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGTTGGGCATTTCTTCAAACCTCCAAGGAAATTCACATAACCC  550

seq1  TGATATAAAATATAAACTATATTTAAGGGAAAGGAAGGGCACTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAATATAAACTATATTTAAGGGAAAGGAAGGGCACTTTATAAA  600

seq1  CATATCCTTAATTTTACAAATAATGTAAATATAATGATTTATACTTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTTAATTTTACAAATAATGTAAATATAATGATTTATACTTCTGC  650

seq1  CTGGATTTATAAAATTAAACAGCATTCATTCAAGACTAATAGCTTTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTATAAAATTAAACAGCATTCATTCAAGACTAATAGCTTTGACA  700

seq1  TCTCAAAGTTACTTATTGTGTGTGTCTATTTTTGTTTTCTATTTTTACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTTACTTATTGTGTGTGTCTATTTTTGTTTTCTATTTTTACGT  750

seq1  AAGATGAGTTATTTGAAGCTATTTTATAAATATGTCATTTTAATTACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGTTATTTGAAGCTATTTTATAAATATGTCATTTTAATTACATT  800

seq1  TTATTAATGTTTACCTTTATAACTGGATTGATAAATTCATCAAGTTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATGTTTACCTTTATAACTGGATTGATAAATTCATCAAGTTGAAT  850

seq1  GAAAATTTCTTTTAGTCTGTTTATGTCTGGTAACAATGTAGATTGATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCTTTTAGTCTGTTTATGTCTGGTAACAATGTAGATTGATTGT  900

seq1  GTTCAGCTTTTTTAATTAAACACCTATTAATTCAATAAAATTTACAGAA-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCAGCTTTTTTAATTAAACACCTATTAATTCAATAAAATTTACAGAAT  950

seq1  TTTTTATTTTCAGATGTCTCTGGCATTATGCTTGTAAGAAAGTG-AAAAA  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTTATTTTCAGATGTCTCTGGCATTATGCTTGTAAGAAAGTGAAAAAA  1000

seq1  AGAAAGTATTTTCATTTTTATATCAAGCACAATGCCAGAGGACACTTACA  1048
      |||||||| ||||||||||||||||||||| |||||||| ||||||||||
seq2  AGAAAGTA-TTTCATTTTTATATCAAGCAC-ATGCCAGA-GACACTTACA  1047

seq1  AGACATATGCCCCTTCTTCATATCCAATACATGCAGTGTTTGACCATTCC  1098
      ||||||||||||||||||||||| ||||||||||||||||||| ||||| 
seq2  AGACATATGCCCCTTCTTCATAT-CAATACATGCAGTGTTTGA-CATTC-  1094

seq1  TTTTAAAAGTTTTAATACTGTCACC-AGGCTAA  1130
       ||| |||| ||||||||||||||| |||||||
seq2  -TTTTAAAGGTTTAATACTGTCACCAAGGCTAA  1126


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