BAC Information

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BAC

Clone NameB6Ng01-266E15
Chromosome8 (Build37)
Map Location 105,111,664 - 105,234,123
singlet/doubletdoublet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266E15.bB6Ng01-266E15.g
ACCGA069721GA069722
length1,2251,117
definitionB6Ng01-266E15.b B6Ng01-266E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,111,664 - 105,112,886)(105,232,981 - 105,234,123)
sequence
gaattcatttataaaacctactaaaaatgaaaaataattatcatatatct
agattttttttcggggacagtagattcaggaacacgtagatattctctca
cactttaggatctgggaaactgaggacagatacttataaattatttggct
tccagtgcacacttgtgaacacatccacactttctgtagtcatgtaatta
aacagcatgctttcttttgtgagtgtgctccatgacagtctctgggatac
gttctggcaataaaatgatagaaaggaatgactgctgtcctaatgtcctt
aaagtcacagttatttcagaggttctgaacattgttcattttttgataga
tttatcttaaattaaatatgtattgcagaataaaatttctcaagtgccag
cactagaaggggagggtgttgtgcaaaatggacagttaaaaaaatagcag
aaaactgataaaggtgagatgccatttggtagcatgtatgaaaggagttt
actttgacttttttttttgaaattaagaaagcataactgtcatttctggt
tgtggcagcaatggcttctcattcagaaataggcagctgcagcaacgcat
actactgtcaaacttgcctgtgtcacccgacaacacagagaatgtattgt
tcaatgccaaatgatccttttgtcatcattttcaaaatagctgcctggca
cttcattgcatgaatgaaatattttcctggtctgaagttctttatctctg
taaatcataacaaccctacttgattacactttaactacagctctttgtga
gccttgctgttcaatttggaagaatactcaactaaatatttcagaacgtt
tttaacagctacagatacagtgtgaactctttattttctgtttctttctg
cttcacaatcagactggtccttttgttttgcacaaagcttcatcaatcta
ccaagctgaaggaatccctagtttggtttcatctctctgaagcttagctc
tcctgttcaaatgagagtagctttagcacaaagtttggctgagaggatct
ttgattttgatctctatcaagcatatgataagcatccaataacattttaa
ggtgtattcttggctgttgctgtttggtgctggctttgtagtagcattca
cctttcctggatcagtcggtcctggttcaacctctctttacggtgacgag
cagcggtacgtataatctctcacat

gaattcatataatcagttgtactagtgacctaaccatgtactattgaaca
attctatccagaactggaaaataagctccaacagtagcctgtcttacatg
cattatttattctggaaaaggaaacattcatgatgaggagcacactgaat
tagtaagtgtcccaatggctgcaaagaaagacagtatttttcctggtgtg
ctactgtgattactgtgtaatagggagccagttaacccaccattacacca
accacacatccgttgatcctcttgggaccacttattgcagtttatagatt
ttttttttcagtaaaacacaaaatcccagagccccctactgacttctcca
agtttcctaataacagccaatgcttgaaaaacacttggctaagataatct
ggagttttatccagacaacactctctctgtaaaccaacttctctttagca
ttaaaatgtcctccaactattactgaacaaggaaaggtactatcagagca
caaagctatagagatttgtccaactacatgagggatgaaagcaaatgctg
tcatcaatagtcctaaattcttttctgggttgttattatgtagtgaagaa
cttggatggatctttgctttcagtaactcacctgatccttataaccatcc
caaaagttgatatgattggttgttacatacataatagtacttccctaaag
atggctcacaacaaactccaaaaattttaaactatgagatctttcatggc
aaaggagaccttagcaatagaattgaattaaggatcttgatggtagttca
ttcttgtaacctcagcatctgggggctgaaaggtagaaaatagtgagttt
gaggtcagcctgagttacactttgaaatcttgcctctgaataatataaat
aaataaataaataattaaaatgtaaagatcttaagacaggaaattaacca
ggattgacttgccgtttttcatgtaatcaaaatatcctttgagagggcct
cactacactgcagacaaataatgctagggagagttgactgatgttctctg
agtagaggaagacatgatcaaagagaaggagcatctgaatatcaaagaca
agacaagtgatgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105111664_105112886
seq2: B6Ng01-266E15.b_45_1269

seq1  GAATTCATTTATAAAACCTACTAAAAATGAAAAATAATTATCATATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAAAACCTACTAAAAATGAAAAATAATTATCATATATCT  50

seq1  AGATTTTTTTTCGGGGACAGTAGATTCAGGAACACGTAGATATTCTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTTCGGGGACAGTAGATTCAGGAACACGTAGATATTCTCTCA  100

seq1  CACTTTAGGATCTGGGAAACTGAGGACAGATACTTATAAATTATTTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAGGATCTGGGAAACTGAGGACAGATACTTATAAATTATTTGGCT  150

seq1  TCCAGTGCACACTTGTGAACACATCCACACTTTCTGTAGTCATGTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCACACTTGTGAACACATCCACACTTTCTGTAGTCATGTAATTA  200

seq1  AACAGCATGCTTTCTTTTGTGAGTGTGCTCCATGACAGTCTCTGGGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATGCTTTCTTTTGTGAGTGTGCTCCATGACAGTCTCTGGGATAC  250

seq1  GTTCTGGCAATAAAATGATAGAAAGGAATGACTGCTGTCCTAATGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCAATAAAATGATAGAAAGGAATGACTGCTGTCCTAATGTCCTT  300

seq1  AAAGTCACAGTTATTTCAGAGGTTCTGAACATTGTTCATTTTTTGATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAGTTATTTCAGAGGTTCTGAACATTGTTCATTTTTTGATAGA  350

seq1  TTTATCTTAAATTAAATATGTATTGCAGAATAAAATTTCTCAAGTGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTAAATTAAATATGTATTGCAGAATAAAATTTCTCAAGTGCCAG  400

seq1  CACTAGAAGGGGAGGGTGTTGTGCAAAATGGACAGTTAAAAAAATAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAAGGGGAGGGTGTTGTGCAAAATGGACAGTTAAAAAAATAGCAG  450

seq1  AAAACTGATAAAGGTGAGATGCCATTTGGTAGCATGTATGAAAGGAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATAAAGGTGAGATGCCATTTGGTAGCATGTATGAAAGGAGTTT  500

seq1  ACTTTGACTTTTTTTTTTGAAATTAAGAAAGCATAACTGTCATTTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACTTTTTTTTTTGAAATTAAGAAAGCATAACTGTCATTTCTGGT  550

seq1  TGTGGCAGCAATGGCTTCTCATTCAGAAATAGGCAGCTGCAGCAACGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGCAATGGCTTCTCATTCAGAAATAGGCAGCTGCAGCAACGCAT  600

seq1  ACTACTGTCAAACTTGCCTGTGTCACCCGACAACACAGAGAATGTATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTCAAACTTGCCTGTGTCACCCGACAACACAGAGAATGTATTGT  650

seq1  TCAATGCCAAATGATCCTTTTGTCATCATTTTCAAAATAGCTGCCTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCCAAATGATCCTTTTGTCATCATTTTCAAAATAGCTGCCTGGCA  700

seq1  CTTCATTGCATGAATGAAATATTTTCCTGGTCTGAAGTTCTTTATCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGCATGAATGAAATATTTTCCTGGTCTGAAGTTCTTTATCTCTG  750

seq1  TAAATCATAACAACCCTACTTGATTACACTTTAACTACAGCTCTTTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATAACAACCCTACTTGATTACACTTTAACTACAGCTCTTTGTGA  800

seq1  GCCTTGCTGTTCAATTTGGAAGAATACTCAACTAAATATTTCAGAACGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCTGTTCAATTTGGAAGAATACTCAACTAAATATTTCAGAACGTT  850

seq1  TTTAACAGCTACAGATACAGTGTGAACTCTTTATTTTCTGTTTCTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGCTACAGATACAGTGTGAACTCTTTATTTTCTGTTTCTTTCTG  900

seq1  CTTCACAATCAGACTGGTCCTTTTGTTTTGCACAAAGCTTCATCAATCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAATCAGACTGGTCCTTTTGTTTTGCACAAAGCTTCATCAATCTA  950

seq1  CCAAGCTGAAGGGAATCCCTAGTTTGGTTTCATCTCTCTGAAGCTTAGCC  1000
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  CCAAGCTGAA-GGAATCCCTAGTTTGGTTTCATCTCTCTGAAGCTTAG-C  998

seq1  TCTTCCTGTTCAAAATGAGAGTAGCTTTAGCACAAAGTTTGGCTGAAGAG  1050
      || |||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  TC-TCCTGTTC-AAATGAGAGTAGCTTTAGCACAAAGTTTGGCTG-AGAG  1045

seq1  GAATCTTTGATTTTGATCTTCTATCAAGCATATGATAAGCATCCAAT-AC  1099
      | |||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  G-ATCTTTGATTTTGATC-TCTATCAAGCATATGATAAGCATCCAATAAC  1093

seq1  ATTTT-AGGTGTATTCTTTGGCTGTTGCTGTTT-GTGCTGGGCTTTTGTA  1147
      ||||| |||||||||| |||||||||||||||| |||||||   ||||||
seq2  ATTTTAAGGTGTATTC-TTGGCTGTTGCTGTTTGGTGCTGG--CTTTGTA  1140

seq1  GTAAGCA-TCACCTCTCCT-GATCAGTCTGTCCTCTGTCTACTCTCTCTT  1195
      || |||| |||||| |||| |||||||| |||||   || || |||||||
seq2  GT-AGCATTCACCTTTCCTGGATCAGTCGGTCCTGGTTCAAC-CTCTCTT  1188

seq1  TAC-GTGAC-AGCAG-----CGTACAA--TCTCACAT  1223
      ||| ||||| |||||     |||| ||  ||||||||
seq2  TACGGTGACGAGCAGCGGTACGTATAATCTCTCACAT  1225


seq1: chr8_105232981_105234123
seq2: B6Ng01-266E15.g_68_1184 (reverse)

seq1  GAAGTCATCACTTTGGTCTTGTCTTTTGATATCTCAGATGCCTCCTTCCT  50
      |||||||||||||  |||||||| |||||||| ||||||| |||||| ||
seq2  GAAGTCATCACTT--GTCTTGTC-TTTGATAT-TCAGATG-CTCCTT-CT  44

seq1  CTTTTGGATCATGGTCTCTCCTTCTACCTTCAGAGAACATCAGGTCAAC-  99
      ||||  |||||||   ||| | |||||  ||||||||||||| |||||| 
seq2  CTTT--GATCATG---TCTTCCTCTAC--TCAGAGAACATCA-GTCAACT  86

seq1  CTCCCTTCCCTTAGCATTATTTTGTTCCTTCCAGTGTAGTTGAGGCCCTC  149
      |||||      |||||||| |||||    | |||||||| ||||||||| 
seq2  CTCCC------TAGCATTA-TTTGT---CTGCAGTGTAG-TGAGGCCCT-  124

seq1  CTCAAAGGATATTTTTGATTACATGAAAAACGGCAAGTCAATCCTGGTTA  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGATA-TTTTGATTACATGAAAAACGGCAAGTCAATCCTGGTTA  173

seq1  ATTTCCTGTCTTAAGATCTTTACATTTTTATTTATTTATTTATTTATTTA  249
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  ATTTCCTGTCTTAAGATCTTTACA-TTTTAATTATTTATTTATTTATTTA  222

seq1  TATTATTCAGAGGCAAGATTTCAAAGTGTAACTCAGGCTGACCTCAAACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCAGAGGCAAGATTTCAAAGTGTAACTCAGGCTGACCTCAAACT  272

seq1  CACTATTTTCTACC-TTCAGCCCCCAGATGCTGAGGTTACAAGAATGAAC  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTATTTTCTACCTTTCAGCCCCCAGATGCTGAGGTTACAAGAATGAAC  322

seq1  TACCATCAAGATCCTTAATTCAATTCTATTGCTAAGGTCTCCTTTGCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAAGATCCTTAATTCAATTCTATTGCTAAGGTCTCCTTTGCCAT  372

seq1  GAAAGATCTCATAGTTTAAAATTTTTGGAGTTTGTTGTGAGCCATCTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTCATAGTTTAAAATTTTTGGAGTTTGTTGTGAGCCATCTTTA  422

seq1  GGGAAGTACTATTATGTATGTAACAACCAATCATATCAACTTTTGGGATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTACTATTATGTATGTAACAACCAATCATATCAACTTTTGGGATG  472

seq1  GTTATAAGGATCAGGTGAGTTACTGAAAGCAAAGATCCATCCAAGTTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGGATCAGGTGAGTTACTGAAAGCAAAGATCCATCCAAGTTCTT  522

seq1  CACTACATAATAACAACCCAGAAAAGAATTTAGGACTATTGATGACAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATAATAACAACCCAGAAAAGAATTTAGGACTATTGATGACAGCA  572

seq1  TTTGCTTTCATCCCTCATGTAGTTGGACAAATCTCTATAGCTTTGTGCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCATCCCTCATGTAGTTGGACAAATCTCTATAGCTTTGTGCTC  622

seq1  TGATAGTACCTTTCCTTGTTCAGTAATAGTTGGAGGACATTTTAATGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTACCTTTCCTTGTTCAGTAATAGTTGGAGGACATTTTAATGCTA  672

seq1  AAGAGAAGTTGGTTTACAGAGAGAGTGTTGTCTGGATAAAACTCCAGATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTTGGTTTACAGAGAGAGTGTTGTCTGGATAAAACTCCAGATT  722

seq1  ATCTTAGCCAAGTGTTTTTCAAGCATTGGCTGTTATTAGGAAACTTGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGCCAAGTGTTTTTCAAGCATTGGCTGTTATTAGGAAACTTGGAG  772

seq1  AAGTCAGTAGGGGGCTCTGGGATTTTGTGTTTTACTGAAAAAAAAAATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTAGGGGGCTCTGGGATTTTGTGTTTTACTGAAAAAAAAAATCT  822

seq1  ATAAACTGCAATAAGTGGTCCCAAGAGGATCAACGGATGTGTGGTTGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGCAATAAGTGGTCCCAAGAGGATCAACGGATGTGTGGTTGGTG  872

seq1  TAATGGTGGGTTAACTGGCTCCCTATTACACAGTAATCACAGTAGCACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGGTTAACTGGCTCCCTATTACACAGTAATCACAGTAGCACAC  922

seq1  CAGGAAAAATACTGTCTTTCTTTGCAGCCATTGGGACACTTACTAATTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAATACTGTCTTTCTTTGCAGCCATTGGGACACTTACTAATTCA  972

seq1  GTGTGCTCCTCATCATGAATGTTTCCTTTTCCAGAATAAATAATGCATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCCTCATCATGAATGTTTCCTTTTCCAGAATAAATAATGCATGT  1022

seq1  AAGACAGGCTACTGTTGGAGCTTATTTTCCAGTTCTGGATAGAATTGTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTACTGTTGGAGCTTATTTTCCAGTTCTGGATAGAATTGTTC  1072

seq1  AATAGTACATGGTTAGGTCACTAGTACAACTGATTATATGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTACATGGTTAGGTCACTAGTACAACTGATTATATGAATTC  1117


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