BAC Information

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BAC

Clone NameB6Ng01-266P24
Chromosome8 (Build37)5 (Build37)
Map Location 114,234,466 - 114,235,54198,555,772 - 98,556,489
singlet/doubletsingletsinglet
Overlap geneBcar1
Upstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1
Downstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266P24.bB6Ng01-266P24.g
ACCGA070248GA070249
length1,074962
definitionB6Ng01-266P24.b B6Ng01-266P24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,234,466 - 114,235,541)(98,555,772 - 98,556,489)
sequence
gaattctcctccctaatcatagttgaaatagctgaacatgtgtagccatg
gagtgccacgtttgaagccgctggcaatgctgctgctggtgatgctgtct
ttcctgtgcactcccagcatgtcctcaagtggcgatgctgcggatactgg
tgctcgctctactttggtggagtactctgcagtcatgagtacagattttt
gcacgtgtctgtctgccgagagcctaaccttgtcctgcctcccacagctg
aaacagtttgagcgactggagcaggaggtgtctcgtccaatagaccacga
cctggccaactggacaccagcccagcccctggtgccgggccggacagggg
gcctggggccttcagaccgacagctgctgctcttctacttggagcagtgc
gaggccaacctgaccacactgacagatgcagtggacgccttcttcactgc
ggtggccaccaaccaaccacccaagatctttgtggcacacagcaagtttg
tcattctcagtgcccacaagcttgtgttcattggggacacactgtcacgg
caggcaaaggcagctgatgtccgaagccaagtgacccactacagcaatct
gctgtgtgacctcctgcgtggcattgtggccaccaccaaggctgctgccc
tgcagtacccatccccttccgctgcccaggacatggtggacagggtcaag
gagctaggccacagcactcagcagttccgccgcgtcctgggccagctagc
tgctgcctgagagcagaggaccaggatgtgaggctggggatgggcagcga
tgctctgagctacccagcattcattcctcttgaaaacggagctcctgcaa
ggtttggggacaggtaaccccagctctgccttgggcctggtgccctcaac
tgtccagggatttgtacatatttatatcaaggcaggatgtggatgccctc
cttcggagagctgaggagccagtacgagtgtaccgtgggctggggatcac
caggattgtgcacatggtcctcaaacctcatgggctcctgtgacagcaag
tacagatgtgtgcactactctgca
gaattcaacagtaatggactaacttgtgtggagcacatctgaagacagga
tgggggcagaaaacggggattagtgattaagatactggctgctcttgcag
agacatgggctcaatttccaacaatgtcttccagatgacatgcagactat
atcaaggatactgctcactcttcttatcctagtgtactgtgagacagctg
ggcagcaaagagagggagagagagggggagggaaggagggaagatggtct
ctgtctctgaacttaaagtgaatctcttttttatacagtcatcaaaatta
gagttcactttttacaaggattgcttttcttctgtctcactagaaaaaag
acatctggatttagcagtgggacttcccaccatcatgggagatgtggaag
tgatacccacagggtttcggttttcctgggcttctggacaacgtccccta
acccccaattgcaacacagttttctagaacagcttacagaagttacatct
gatagaatgtgtggtcaggtctcctggtatggacaggccaccatgagact
ccacatggacatctcattccacctcaagtcttgacaaccgtctcagtccc
ctcagcctcaacagtgacatcacctcatgtcctgtatgttcagcaggggt
ttttgactccccaacgaatttttacttgggaaatcttaaatctcagtgga
agagatgaacacagagattgtttccctatacccatgcttggtgtctgtct
gtcacactatgtactctaatctctactacacgcccaccgtggatatcaga
gtccagatgagaaaagttttagttcccccttctctcacttatatatccta
aacattcatttctttgcagaaacacaactttgacatagttatccagtcct
acctggggagagggtataaagacattgataaggagtaggaaggggagcag
caaagcttgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114234466_114235541
seq2: B6Ng01-266P24.b_45_1118 (reverse)

seq1  TGCAGAGGTGTGCACCACA-CTGTACTTGCCTGTCACAGGGAGCCC-TGA  48
      |||||||  ||||| |||| ||||||||| |||||||| ||||||| |||
seq2  TGCAGAGTAGTGCA-CACATCTGTACTTG-CTGTCACA-GGAGCCCATGA  47

seq1  GGTTTGGGGCCCATGTGCACCAATCCTGGTGATCCCCAGCCCACGGTACA  98
      |||||| || ||||||||| ||||||||||||||||||||||||||||||
seq2  GGTTTGAGGACCATGTGCA-CAATCCTGGTGATCCCCAGCCCACGGTACA  96

seq1  CTCCTACTGGGCTCCTCAGCTTCTCCG-AGGA-GGCATCCCACATCCTGC  146
      ||| |||| ||||||||||| |||||| |||| ||||| |||||||||||
seq2  CTCGTACT-GGCTCCTCAGC-TCTCCGAAGGAGGGCAT-CCACATCCTGC  143

seq1  CTTGATATAAATATGTACAAATCCCTGGACAGTTGAGGGCACCAGGCCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATAAATATGTACAAATCCCTGGACAGTTGAGGGCACCAGGCCCA  193

seq1  AGGCAGAGCTGGGGTTACCTGTCCCCAAACC-TGCAGGAGCTCCGTTTTC  245
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCAGAGCTGGGGTTACCTGTCCCCAAACCTTGCAGGAGCTCCGTTTTC  243

seq1  AAGAGGAATGAATGCTGGGTAGCTCAGAGCATCGCTGCCCATCCCCAGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATGAATGCTGGGTAGCTCAGAGCATCGCTGCCCATCCCCAGCC  293

seq1  TCACATCCTGGTCCTCTGCTCTCAGGCAGCAGCTAGCTGGCCCAGGACGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCTGGTCCTCTGCTCTCAGGCAGCAGCTAGCTGGCCCAGGACGC  343

seq1  GGCGGAACTGCTGAGTGCTGTGGCCTAGCTCCTTGACCCTGTCCACCATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAACTGCTGAGTGCTGTGGCCTAGCTCCTTGACCCTGTCCACCATG  393

seq1  TCCTGGGCAGCGGAAGGGGATGGGTACTGCAGGGCAGCAGCCTTGGTGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCAGCGGAAGGGGATGGGTACTGCAGGGCAGCAGCCTTGGTGGT  443

seq1  GGCCACAATGCCACGCAGGAGGTCACACAGCAGATTGCTGTAGTGGGTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAATGCCACGCAGGAGGTCACACAGCAGATTGCTGTAGTGGGTCA  493

seq1  CTTGGCTTCGGACATCAGCTGCCTTTGCCTGCCGTGACAGTGTGTCCCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTCGGACATCAGCTGCCTTTGCCTGCCGTGACAGTGTGTCCCCA  543

seq1  ATGAACACAAGCTTGTGGGCACTGAGAATGACAAACTTGCTGTGTGCCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACAAGCTTGTGGGCACTGAGAATGACAAACTTGCTGTGTGCCAC  593

seq1  AAAGATCTTGGGTGGTTGGTTGGTGGCCACCGCAGTGAAGAAGGCGTCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTTGGGTGGTTGGTTGGTGGCCACCGCAGTGAAGAAGGCGTCCA  643

seq1  CTGCATCTGTCAGTGTGGTCAGGTTGGCCTCGCACTGCTCCAAGTAGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTGTCAGTGTGGTCAGGTTGGCCTCGCACTGCTCCAAGTAGAAG  693

seq1  AGCAGCAGCTGTCGGTCTGAAGGCCCCAGGCCCCCTGTCCGGCCCGGCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCTGTCGGTCTGAAGGCCCCAGGCCCCCTGTCCGGCCCGGCAC  743

seq1  CAGGGGCTGGGCTGGTGTCCAGTTGGCCAGGTCGTGGTCTATTGGACGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTGGGCTGGTGTCCAGTTGGCCAGGTCGTGGTCTATTGGACGAG  793

seq1  ACACCTCCTGCTCCAGTCGCTCAAACTGTTTCAGCTGTGGGAGGCAGGAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTGCTCCAGTCGCTCAAACTGTTTCAGCTGTGGGAGGCAGGAC  843

seq1  AAGGTTAGGCTCTCGGCAGACAGACACGTGCAAAAATCTGTACTCATGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGGCTCTCGGCAGACAGACACGTGCAAAAATCTGTACTCATGAC  893

seq1  TGCAGAGTACTCCACCAAAGTAGAGCGAGCACCAGTATCCGCAGCATCGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTACTCCACCAAAGTAGAGCGAGCACCAGTATCCGCAGCATCGC  943

seq1  CACTTGAGGACATGCTGGGAGTGCACAGGAAAGACAGCATCACCAGCAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGGACATGCTGGGAGTGCACAGGAAAGACAGCATCACCAGCAGC  993

seq1  AGCATTGCCAGCGGCTTCAAACGTGGCACTCCATGGCTACACATGTTCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCCAGCGGCTTCAAACGTGGCACTCCATGGCTACACATGTTCAG  1043

seq1  CTATTTCAACTATGATTAGGGAGGAGAATTC  1076
      |||||||||||||||||||||||||||||||
seq2  CTATTTCAACTATGATTAGGGAGGAGAATTC  1074

seq1: chr5_98555772_98556489
seq2: B6Ng01-266P24.g_307_1026 (reverse)

seq1  GTCATGCTTTGCTGCTTCCCTTCCTACTCCCTTATCAATGTCTTTATAAC  50
      |||| ||||||||||| ||||||||||| |||||||||||||||||| ||
seq2  GTCAAGCTTTGCTGCTCCCCTTCCTACT-CCTTATCAATGTCTTTAT-AC  48

seq1  CCTCT-CCCAGGTA-GACTGGATAACTATGTCAAAGTTGTGTTTCTGCAA  98
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCAGGTAGGACTGGATAACTATGTCAAAGTTGTGTTTCTGCAA  98

seq1  AGAAATGAATG-TTAAGATATATAAGTGAGAGAAGGGGGAACTAAAACTT  147
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  AGAAATGAATGTTTAGGATATATAAGTGAGAGAAGGGGGAACTAAAACTT  148

seq1  TTCTCATCTGGACTCTGATATCCACGGTGGGCGTGTAGTAGAGATTAGAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTGGACTCTGATATCCACGGTGGGCGTGTAGTAGAGATTAGAG  198

seq1  TACATAGTGTGACAGACAGACACCAAGCATGGGTATAGGGAAACAATCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTGTGACAGACAGACACCAAGCATGGGTATAGGGAAACAATCTC  248

seq1  TGTGTTCATCTCTTCCACCTGAGATTTAAGATTTCCCAAGTAAAAATTCG  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGTTCATCTCTTCCA-CTGAGATTTAAGATTTCCCAAGTAAAAATTCG  297

seq1  TT-GGGAGTC-AAAACCCCTGCTGAACATACAGGACATGAGGTGATGTCA  345
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGTCAAAAACCCCTGCTGAACATACAGGACATGAGGTGATGTCA  347

seq1  CTGTTGAGGCTGAGGGGACTGAGACGGTTGTCAAGACTTGAGGTGGAATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGGCTGAGGGGACTGAGACGGTTGTCAAGACTTGAGGTGGAATG  397

seq1  AGATGTCCATGTGGAGTCTCATGGTGGCCTGTCCATACCAGGAGACCTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCCATGTGGAGTCTCATGGTGGCCTGTCCATACCAGGAGACCTGA  447

seq1  CCACACATTCTATCAGATGTAACTTCTGTAAGCTGTTCTAGAAAACTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATTCTATCAGATGTAACTTCTGTAAGCTGTTCTAGAAAACTGTG  497

seq1  TTGCAATTGGGGGTTAGGGGACGTTGTCCAGAAGCCCAGGAAAACCGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTGGGGGTTAGGGGACGTTGTCCAGAAGCCCAGGAAAACCGAAA  547

seq1  CCCTGTGGGTATCACTTCCACATCTCCCATGATGGTGGGAAGTCCCACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGGTATCACTTCCACATCTCCCATGATGGTGGGAAGTCCCACTG  597

seq1  CTAAATCCAGATGTCTTTTTTCTAGTGAGACAGAAGAAAAGCAATCCTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCAGATGTCTTTTTTCTAGTGAGACAGAAGAAAAGCAATCCTTG  647

seq1  TAAAAAGTGAACTCTAATTTTGATGACTGTATAAAAAAGAGATTCACTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGAACTCTAATTTTGATGACTGTATAAAAAAGAGATTCACTTT  697

seq1  AAGTTCAGAGACAGAGACCATCT  718
      |||||||||||||||||||||||
seq2  AAGTTCAGAGACAGAGACCATCT  720