BAC Information

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BAC

Clone NameB6Ng01-272I12
Chromosome8 (Build37)
Map Location 55,842,613 - 56,030,908
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040107, Vegfc, Spcs3, Asb5, Spata4, Wdr17
Downstream geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272I12.bB6Ng01-272I12.g
ACCGA074334GA074335
length1,0811,166
definitionB6Ng01-272I12.b B6Ng01-272I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,029,828 - 56,030,908)(55,842,613 - 55,843,776)
sequence
gaattcatttaaagaattaaaatacacattcttaaatttttcagcctcta
aaaattatttttaatttggacataactcataccagttatcagagatactg
taaacttttcatgcatcaaatatctttttgctatattgataacagaacaa
taaaaatacacttcacagtctaagcagtaaatcaaaaacagaaacacaaa
actgttgtttggcctcattcctacacacagtaaacgttataatttcatga
gtattgattaaaagtaaaaagcaactcaaggattgtactcttagcccaaa
tatatcctctgaaaatagaatcacttgtcactctgaatgtatttgtacaa
taaaatgttgacaaacttctaagtcttatataatttctattgtctctgtc
ttcaaaattctagaaagccagagaaacaacttctcctgttggaaatattc
tgaaatattcataaaatagcattttctgaaatatagcagaaaacttcagg
gataaaactataattttttgtagtgaaatgaatggaactcaatattatca
agtgagttgaaaaaaaagctaatttcaaaaaggcagttatggtatgattg
ctctcaaagatagattctagacagaagtgacaaaacaagatgagtgaatg
atgctaatatggaagaagaagagcaagtggggatgagacagaagataggg
agtaaatatgccttaaattgataatatgcacatattatagtttgaatgtg
aataaccacatattcatatatttgaatatgttatcactgtggaactactt
taggaggattaggaggtctggccttgatggaagagatttgtcactgaaag
tagagttttttcagaagctcattcaggatctctctctctctctctctgtg
tctctctctgtgtctttgtctctctctgtgtctctgtgtctctgtctctc
tctgtctctctctctgtctctctctgtctctctctgtctctctctctgtc
tctctctctgtctctgtctctctgtctctctgtctctctgatccctctgt
ctctctctctctctctctcttctctcatctc

gaattcaaagacttagggacactactgttgaccattgcagaggcaactca
ttctccatgtggcatctaattctacacagccccttttaaatatcatggca
ttctggtcatttaatctggttggctcaggaatctaaggaaacaaagtcta
attcttgccctggtagagtgaaattttcattgcagtcttttgagtgaaca
ggttagaaatctagcttgactcaaaggtagaaataatgaattccatttat
tgatgtattaatgtcatatgtacatagggacaggggatttttgtcagata
aatttctaactgtaagaaaagcagatttttacattaccatagttactttc
tcacatttgttagtaattattttgttttcctacactcagtccatctgttt
tgagtatacccccatcgtattattttatttgttgaattcaggaatgaaaa
catgatctaaatgaaaggcatgtgagtggattaaagttaatttttctggt
cacttttcaaaagtgatgttccccactctcttaattaaattgaagccata
gtgattttgtttgacaaaagcaataaatagaaaatctgtcagagactgaa
ctcaatgacagaaagtaggcccaaaacctcagttgtggaatattaaactc
atgtgctgtaacttgaacctggcattagcttgctcaaagacagaaccagg
ccttggttttctgtgttgttactcaattcctgggtctgcctgtatgagtc
taagatgggttgtactatgtctgtctgtctgtctgtctgtgtttattttt
ttttttttttactttgatcaagacaaaaaaatcggggaaaaaattgtcct
gtgaaaaacaagggtttaatctaagtctccaccatattcgtgttgaaaaa
ttaaaacaagagatgttttacagcaccaaacacaggattatcaggggatt
ttttggtgaggggaaagtgatcttagtttgaaaggaacgaaataactaaa
aagccttgcatgagaggagcctgggttaaattgtagagacaaacaaatat
aatttgattattgaggtgaacacaagatcaaagaggaatgacaccgaaga
gggaagggtagaaggtaaatctagagtaactcattgaagtgccttaattg
gcgtggttaagagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_56029828_56030908
seq2: B6Ng01-272I12.b_46_1126 (reverse)

seq1  GAGA-GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGA-CAGAGAGA  48
      |||| |||||| |||||||||||||||||||||||||| || ||||||||
seq2  GAGATGAGAGA-AGAGAGAGAGAGAGAGAGAGACAGAGGGATCAGAGAGA  49

seq1  CAGAGAGACAGAGAGACAGAGACAGAGAGAGAGACAGAGAGAGAGACAGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGACAGAGACAGAGAGAGAGACAGAGAGAGAGACAGA  99

seq1  GAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGACACAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAGAGACACAGA  149

seq1  GACACAGAGAGAGACAAAGACACAGAGAGAGACACAGAGAGAGAGAGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGAGAGACAAAGACACAGAGAGAGACACAGAGAGAGAGAGAGA  199

seq1  GAGATCCTGAATTGAGCTTCTGAAAAAACTCTACTTTCAGTGACAAATCT  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGAA-TGAGCTTCTGAAAAAACTCTACTTTCAGTGACAAATCT  248

seq1  CTTCCATCAAGGCCAGACCTCCTAATCCTCCTAAAGTAGTTCCACAGTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCAAGGCCAGACCTCCTAATCCTCCTAAAGTAGTTCCACAGTGA  298

seq1  TAACATATTCAAATATATGAATATGTGGTTATTCACATTCAAACTATAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATTCAAATATATGAATATGTGGTTATTCACATTCAAACTATAAT  348

seq1  ATGTGCATATTATCAATTTAAGGCATATTTACTCCCTATCTTCTGTCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATATTATCAATTTAAGGCATATTTACTCCCTATCTTCTGTCTCA  398

seq1  TCCCCACTTGCTCTTCTTCTTCCATATTAGCATCATTCACTCATCTTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTTGCTCTTCTTCTTCCATATTAGCATCATTCACTCATCTTGTT  448

seq1  TTGTCACTTCTGTCTAGAATCTATCTTTGAGAGCAATCATACCATAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTTCTGTCTAGAATCTATCTTTGAGAGCAATCATACCATAACTG  498

seq1  CCTTTTTGAAATTAGCTTTTTTTTCAACTCACTTGATAATATTGAGTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAAATTAGCTTTTTTTTCAACTCACTTGATAATATTGAGTTCC  548

seq1  ATTCATTTCACTACAAAAAATTATAGTTTTATCCCTGAAGTTTTCTGCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCACTACAAAAAATTATAGTTTTATCCCTGAAGTTTTCTGCTA  598

seq1  TATTTCAGAAAATGCTATTTTATGAATATTTCAGAATATTTCCAACAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGAAAATGCTATTTTATGAATATTTCAGAATATTTCCAACAGGA  648

seq1  GAAGTTGTTTCTCTGGCTTTCTAGAATTTTGAAGACAGAGACAATAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTTTCTCTGGCTTTCTAGAATTTTGAAGACAGAGACAATAGAAA  698

seq1  TTATATAAGACTTAGAAGTTTGTCAACATTTTATTGTACAAATACATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAGACTTAGAAGTTTGTCAACATTTTATTGTACAAATACATTCA  748

seq1  GAGTGACAAGTGATTCTATTTTCAGAGGATATATTTGGGCTAAGAGTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAAGTGATTCTATTTTCAGAGGATATATTTGGGCTAAGAGTACA  798

seq1  ATCCTTGAGTTGCTTTTTACTTTTAATCAATACTCATGAAATTATAACGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAGTTGCTTTTTACTTTTAATCAATACTCATGAAATTATAACGT  848

seq1  TTACTGTGTGTAGGAATGAGGCCAAACAACAGTTTTGTGTTTCTGTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTGTAGGAATGAGGCCAAACAACAGTTTTGTGTTTCTGTTTTT  898

seq1  GATTTACTGCTTAGACTGTGAAGTGTATTTTTATTGTTCTGTTATCAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTGCTTAGACTGTGAAGTGTATTTTTATTGTTCTGTTATCAATA  948

seq1  TAGCAAAAAGATATTTGATGCATGAAAAGTTTACAGTATCTCTGATAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAAGATATTTGATGCATGAAAAGTTTACAGTATCTCTGATAACT  998

seq1  GGTATGAGTTATGTCCAAATTAAAAATAATTTTTAGAGGCTGAAAAATTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGTTATGTCCAAATTAAAAATAATTTTTAGAGGCTGAAAAATTT  1048

seq1  AAGAATGTGTATTTTAATTCTTTAAATGAATTC  1081
      |||||||||||||||||||||||||||||||||
seq2  AAGAATGTGTATTTTAATTCTTTAAATGAATTC  1081


seq1: chr8_55842613_55843776
seq2: B6Ng01-272I12.g_65_1230

seq1  GAATTCAAAGACTTAGGGACACTACTGTTGACCATTGCAGAGGCAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACTTAGGGACACTACTGTTGACCATTGCAGAGGCAACTCA  50

seq1  TTCTCCATGTGGCATCTAATTCTACACAGCCCCTTTTAAATATCATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATGTGGCATCTAATTCTACACAGCCCCTTTTAAATATCATGGCA  100

seq1  TTCTGGTCATTTAATCTGGTTGGCTCAGGAATCTAAGGAAACAAAGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCATTTAATCTGGTTGGCTCAGGAATCTAAGGAAACAAAGTCTA  150

seq1  ATTCTTGCCCTGGTAGAGTGAAATTTTCATTGCAGTCTTTTGAGTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCCCTGGTAGAGTGAAATTTTCATTGCAGTCTTTTGAGTGAACA  200

seq1  GGTTAGAAATCTAGCTTGACTCAAAGGTAGAAATAATGAATTCCATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAAATCTAGCTTGACTCAAAGGTAGAAATAATGAATTCCATTTAT  250

seq1  TGATGTATTAATGTCATATGTACATAGGGACAGGGGATTTTTGTCAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTAATGTCATATGTACATAGGGACAGGGGATTTTTGTCAGATA  300

seq1  AATTTCTAACTGTAAGAAAAGCAGATTTTTACATTACCATAGTTACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAACTGTAAGAAAAGCAGATTTTTACATTACCATAGTTACTTTC  350

seq1  TCACATTTGTTAGTAATTATTTTGTTTTCCTACACTCAGTCCATCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGTTAGTAATTATTTTGTTTTCCTACACTCAGTCCATCTGTTT  400

seq1  TGAGTATACCCCCATCGTATTATTTTATTTGTTGAATTCAGGAATGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATACCCCCATCGTATTATTTTATTTGTTGAATTCAGGAATGAAAA  450

seq1  CATGATCTAAATGAAAGGCATGTGAGTGGATTAAAGTTAATTTTTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTAAATGAAAGGCATGTGAGTGGATTAAAGTTAATTTTTCTGGT  500

seq1  CACTTTTCAAAAGTGATGTTCCCCACTCTCTTAATTAAATTGAAGCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCAAAAGTGATGTTCCCCACTCTCTTAATTAAATTGAAGCCATA  550

seq1  GTGATTTTGTTTGACAAAAGCAATAAATAGAAAATCTGTCAGAGACTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTGTTTGACAAAAGCAATAAATAGAAAATCTGTCAGAGACTGAA  600

seq1  CTCAATGACAGAAAGTAGGCCCAAAACCTCAGTTGTGGAATATTAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGACAGAAAGTAGGCCCAAAACCTCAGTTGTGGAATATTAAACTC  650

seq1  ATGTGCTGTAACTTGAACCTGGCATTAGCTTGCTCAAAGACAGAACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGTAACTTGAACCTGGCATTAGCTTGCTCAAAGACAGAACCAGG  700

seq1  CCTTGGTTTTCTGTGTTGTTACTCAATTCCTGGGTCTGCCTGTATGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTTTCTGTGTTGTTACTCAATTCCTGGGTCTGCCTGTATGAGTC  750

seq1  TAAGATGGGTTGTACTATGTCTGTCTGTCTGTCTGTCTGTGTTTA--TTT  798
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TAAGATGGGTTGTACTATGTCTGTCTGTCTGTCTGTCTGTGTTTATTTTT  800

seq1  TTTTTTTTTTACTTTGATCAAGACAAAAAAATCGGGGAAAAAATTGTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTACTTTGATCAAGACAAAAAAATCGGGGAAAAAATTGTCCT  850

seq1  GTGAAAAACAAGGGTTTAATCTAAGTCTCCACCATATTCGTGTTGAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAACAAGGGTTTAATCTAAGTCTCCACCATATTCGTGTTGAAAAA  900

seq1  TTAAAACAAGAGATG-TTTACAGCACCAAACACAGGA-TATCAGGGGA-T  945
      ||||||||||||||| ||||||||||||||||||||| |||||||||| |
seq2  TTAAAACAAGAGATGTTTTACAGCACCAAACACAGGATTATCAGGGGATT  950

seq1  ATTTGGTGAGGGAAAAGTGATCTTAAGTTG-AAGGAACGAAAT-ACT-AA  992
       ||||||||||| ||||||||||||  ||| |||||||||||| ||| ||
seq2  TTTTGGTGAGGGGAAAGTGATCTTAGTTTGAAAGGAACGAAATAACTAAA  1000

seq1  AAGCCTTGCATGGAGAGGAAGCT-GGTTAAATTGTAGAGACAAAACAAAA  1041
      ||||||||||| |||||||  || ||||||||||||||||||||   |||
seq2  AAGCCTTGCAT-GAGAGGAGCCTGGGTTAAATTGTAGAGACAAA--CAAA  1047

seq1  TATAA-TTGATTATGAAGGTTGAACACAAAGATCAAAGAAGGAGATGACA  1090
      ||||| ||||||||  ||| ||||||| |||||||||| |||| ||||| 
seq2  TATAATTTGATTATTGAGG-TGAACAC-AAGATCAAAG-AGGA-ATGAC-  1092

seq1  ACCGAGAGAGGAGAGGTTAGAAGGTAAATACTAGGTGAACCCTCA-TGAA  1139
      ||||| |||||  ||| |||||||||||| ||||   ||  |||| ||||
seq2  ACCGA-AGAGGGAAGGGTAGAAGGTAAAT-CTAGAGTAA--CTCATTGAA  1138

seq1  GTG-CTTAATATGC-TGGTTAA-AGTGC  1164
      ||| ||||||  || ||||||| |||||
seq2  GTGCCTTAATTGGCGTGGTTAAGAGTGC  1166


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