BAC Information

Click to search

BAC

Clone NameB6Ng01-274N08
Chromosome8 (Build37)
Map Location 55,234,912 - 55,356,486
singlet/doubletdoublet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274N08.bB6Ng01-274N08.g
ACCGA076030GA076031
length1,1641,106
definitionB6Ng01-274N08.b B6Ng01-274N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,355,320 - 55,356,486)(55,234,912 - 55,236,019)
sequence
gaattctcaacaatgcacatagctgaaataacatttctccaacttactgt
ttttgcctttcctctcaaggtctcatctagtggttttgtttaatcaaata
agagcccttttgtagtttctcattctgaatagctcagtgcttttcaatgt
agaaaaaaagttgctagtctgctttgtaaataaccataacatttagaaaa
tactttctaaaaattttacttttttatgtatgtaagtattttgccaacat
ttatatatgtgaaccccatgtgggcctggtgcccagagaggttggaagag
ggcatcagatcctttagagctggagttacagatggttatgagccaatgtg
tggattctgaaaactgaatctgtgttgaatgcaagagctgtaaattcttt
taacccctaaccatctctctagccacaaagaaagaaaaaagccttaaatg
aaaatggccagtttttttttgaaacaaagatttcaaatcaccaactcaaa
aatatgtaccacataatttttctgaatttaatataaaagttgcccattaa
gaacacacatacacatgcaaaagcaaaactggaagatgatgtccactagt
gtgtttttagaaaggccttaaacaaacaaacaaaaaaatagtaaaaagga
caggaccaaagtaacacgcattcagtgtcttgttacttcaagagtcctgc
agcacaaatgttcacatattgctctgaagaaaaaaagcactaagaaatat
agaggaggctgaagaatgttctaaatctcagtcaagaaagtgaaggatgc
caatgaaaatgccaggagcagattgccaagagatacaggctgttctccat
tttccttctatgtctgagatcagtcaaaaataagcctctaaaaaaatgtg
taacagatgaaagcatctttccctgagaaaagaaaacgaacatttcaagc
cactcaatttaggaacataatcttaaaaatgaaaggaaaaccatattatt
taatgtgttcttatatttttcttaaatacttattttatgaatgaagccat
tctttatttaatcatttgcatgggaatactgcttgtgactagatctattc
ttatggatcatgttataaagccaatgattcgagttgaaagatgatttaac
agttaagacatgga

gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgcccggccaggaagaacaccacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaagagtgtaagaagcaag
agagagagaaaacgaaaacccgtcccttttttaggagagttatatttcgc
ctaggacgtgtcactccctgattggctgcagcccatcggccgagttgacg
tcacggggaaggcagagcacatggagtggagaaccaccctcggcatatgc
gcagtttatttgtttaccacttagaacacagctgtcagcgccatcttgta
acggcgaatgtgggcgcggctcccaacacttaagaagtgcctttacgtat
gcaatgtgagcatttaaataatatgcacatgtatgatgaggtaaagtgag
atttcacagagtacagattataaaaacttgagaatgaagaaggttttgaa
atgtaccttgctatacaggaatgaatctcttaacatggttcctaatgttg
actgttgtcaccaagtttcttgattataattgtctttataacatatgtca
cataacatatataaagccctgggcatgtcatggtagttcatacaataatt
tgcttaattttttgtatattttttttgttttttgtatttttttaatttaa
ctgatgtttttaatagaagaaaaaggcagaaattttcaattgttttggat
attagttctattgttaaattaggaaaattatatgtacaatccaaatagta
cgcttaatatcaagctccattataaagctgttgtaagaggtggtgacgta
gctctgccatagagtacttctttaaccctcttgttgtgcaaagccctggt
ttcagtctctagcagaacacttacttgatgattaacacctgagttttgta
ctaggctaggtacataatttacatactaatgaaatgggagttagattagt
cctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55355320_55356486
seq2: B6Ng01-274N08.b_45_1208 (reverse)

seq1  TCCATGTTTTTAACTTGTAAATCATCTCTCCAACTCTGATCATTTGCTTT  50
      |||||| | ||||||  |||||||||| | ||||||  |||||| || ||
seq2  TCCATG-TCTTAACTGTTAAATCATCT-TTCAACTCGAATCATTGGC-TT  47

seq1  TATAACAATGATCCAT-AGAATAGATCTTAGTCACAAAAACAAGTATT-C  98
      |||||| ||||||||| |||||||||| |||||||   ||  |||||| |
seq2  TATAAC-ATGATCCATAAGAATAGATC-TAGTCAC---AAGCAGTATTCC  92

seq1  CATGC-AATGATTTAAATAAAGAATGGCTTCATTCAT-AAATAAGTATTT  146
      ||||| ||||| ||||||||||||||||||||||||| ||||||||||||
seq2  CATGCAAATGA-TTAAATAAAGAATGGCTTCATTCATAAAATAAGTATTT  141

seq1  AAGGAAAATATTAAGACACATTTAAATATATGGTTTTCC-TTCATTTTTA  195
      ||| ||||||| |  ||||||| ||  |||||||||||| ||||||||||
seq2  AAGAAAAATATAAGAACACATTAAATAATATGGTTTTCCTTTCATTTTTA  191

seq1  AGATTATG-TCCTAAATTGAGTGGCTTGAAATGTTCGTTTTCTTTTCTCA  244
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTTCCTAAATTGAGTGGCTTGAAATGTTCGTTTTCTTTTCTCA  241

seq1  GGGAAAGATGCTTTCATCTGTTACACATTTTTTTAGAGGCTTATTTTTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGATGCTTTCATCTGTTACACATTTTTTTAGAGGCTTATTTTTGA  291

seq1  CTGATCTCAGACATAGAAGGAAAATGGAGAACAGCCTGTATCTCTTGGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCAGACATAGAAGGAAAATGGAGAACAGCCTGTATCTCTTGGCA  341

seq1  ATCTGCTCCTGGCATTTTCATTGGCATCCTTCACTTTCTTGACTGAGATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCTGGCATTTTCATTGGCATCCTTCACTTTCTTGACTGAGATT  391

seq1  TAGAACATTCTTCAGCCTCCTCTATATTTCTTAGTGCTTTTTTTCTTCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTCTTCAGCCTCCTCTATATTTCTTAGTGCTTTTTTTCTTCAG  441

seq1  AGCAATATGTGAACATTTGTGCTGCAGGACTCTTGAAGTAACAAGACACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATGTGAACATTTGTGCTGCAGGACTCTTGAAGTAACAAGACACT  491

seq1  GAATGCGTGTTACTTTGGTCCTGTCCTTTTTACTATTTTTTTGTTTGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGTGTTACTTTGGTCCTGTCCTTTTTACTATTTTTTTGTTTGTTT  541

seq1  GTTTAAGGCCTTTCTAAAAACACACTAGTGGACATCATCTTCCAGTTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGCCTTTCTAAAAACACACTAGTGGACATCATCTTCCAGTTTTG  591

seq1  CTTTTGCATGTGTATGTGTGTTCTTAATGGGCAACTTTTATATTAAATTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATGTGTATGTGTGTTCTTAATGGGCAACTTTTATATTAAATTC  641

seq1  AGAAAAATTATGTGGTACATATTTTTGAGTTGGTGATTTGAAATCTTTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTATGTGGTACATATTTTTGAGTTGGTGATTTGAAATCTTTGT  691

seq1  TTCAAAAAAAAACTGGCCATTTTCATTTAAGGCTTTTTTCTTTCTTTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAACTGGCCATTTTCATTTAAGGCTTTTTTCTTTCTTTGTG  741

seq1  GCTAGAGAGATGGTTAGGGGTTAAAAGAATTTACAGCTCTTGCATTCAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAGATGGTTAGGGGTTAAAAGAATTTACAGCTCTTGCATTCAAC  791

seq1  ACAGATTCAGTTTTCAGAATCCACACATTGGCTCATAACCATCTGTAACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCAGTTTTCAGAATCCACACATTGGCTCATAACCATCTGTAACT  841

seq1  CCAGCTCTAAAGGATCTGATGCCCTCTTCCAACCTCTCTGGGCACCAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTAAAGGATCTGATGCCCTCTTCCAACCTCTCTGGGCACCAGGC  891

seq1  CCACATGGGGTTCACATATATAAATGTTGGCAAAATACTTACATACATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGGGTTCACATATATAAATGTTGGCAAAATACTTACATACATAA  941

seq1  AAAAGTAAAATTTTTAGAAAGTATTTTCTAAATGTTATGGTTATTTACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAATTTTTAGAAAGTATTTTCTAAATGTTATGGTTATTTACAA  991

seq1  AGCAGACTAGCAACTTTTTTTCTACATTGAAAAGCACTGAGCTATTCAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTAGCAACTTTTTTTCTACATTGAAAAGCACTGAGCTATTCAGA  1041

seq1  ATGAGAAACTACAAAAGGGCTCTTATTTGATTAAACAAAACCACTAGATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACTACAAAAGGGCTCTTATTTGATTAAACAAAACCACTAGATG  1091

seq1  AGACCTTGAGAGGAAAGGCAAAAACAGTAAGTTGGAGAAATGTTATTTCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGAGAGGAAAGGCAAAAACAGTAAGTTGGAGAAATGTTATTTCA  1141

seq1  GCTATGTGCATTGTTGAGAATTC  1167
      |||||||||||||||||||||||
seq2  GCTATGTGCATTGTTGAGAATTC  1164


seq1: chr8_55234912_55236019
seq2: B6Ng01-274N08.g_67_1172

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200

seq1  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250

seq1  AGAGAGAGAAAACGAAAACCCGTCCCTTTTTTAGGAGAGTTATATTTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAACGAAAACCCGTCCCTTTTTTAGGAGAGTTATATTTCGC  300

seq1  CTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACG  350

seq1  TCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCATATGC  400

seq1  GCAGTTTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTA  450

seq1  ACGGCGAATGTGGGCGCGGCTCCCAACACTTAAGAAGTGCCTTTACGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCGAATGTGGGCGCGGCTCCCAACACTTAAGAAGTGCCTTTACGTAT  500

seq1  GCAATGTGAGCATTTAAATAATATGCACATGTATGATGAGGTAAAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGAGCATTTAAATAATATGCACATGTATGATGAGGTAAAGTGAG  550

seq1  ATTTCACAGAGTACAGATTATAAAAACTTGAGAATGAAGAAGGTTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGAGTACAGATTATAAAAACTTGAGAATGAAGAAGGTTTTGAA  600

seq1  ATGTACCTTGCTATACAGGAATGAATCTCTTAACATGGTTCCTAATGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTTGCTATACAGGAATGAATCTCTTAACATGGTTCCTAATGTTG  650

seq1  ACTGTTGTCACCAAGTTTCTTGATTATAATTGTCTTTATAACATATGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCACCAAGTTTCTTGATTATAATTGTCTTTATAACATATGTCA  700

seq1  CATAACATATATAAAGCCCTGGGCATGTCATGGTAGTTCATACAATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATATATAAAGCCCTGGGCATGTCATGGTAGTTCATACAATAATT  750

seq1  TGCTTAATTTTTTGTATA-TTTTTTTGTTTTTTGTATTTTTTTAATTTAA  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTTAATTTTTTGTATATTTTTTTTGTTTTTTGTATTTTTTTAATTTAA  800

seq1  CTGATGTTTTTAATAGAAGAAAAAGGCAGAAATTTTCAATTGTTTTGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTTTAATAGAAGAAAAAGGCAGAAATTTTCAATTGTTTTGGAT  850

seq1  ATTAGTTCTATTGTTAAATTAGGAAAATTATATGTACAATCCAAATAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCTATTGTTAAATTAGGAAAATTATATGTACAATCCAAATAGTA  900

seq1  CGCTTAATATCAAGCTCCATTATAAAGCTGTTGTAAGAGGTGGTGACGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAATATCAAGCTCCATTATAAAGCTGTTGTAAGAGGTGGTGACGTA  950

seq1  GCTCTGCCATAGAGTACTTCTTTAA-CCTCTTG-TGTGCAAGGCCCTGGG  997
      ||||||||||||||||||||||||| ||||||| ||||||| ||||||| 
seq2  GCTCTGCCATAGAGTACTTCTTTAACCCTCTTGTTGTGCAAAGCCCTGGT  1000

seq1  TTCAGTCTCTAGCAGAACACTTTACTGATGATTAAACAACTGAGGTTTTG  1047
      ||||||||||||||||||||||   |||||||| |||| |||| ||||||
seq2  TTCAGTCTCTAGCAGAACACTTACTTGATGATT-AACACCTGA-GTTTTG  1048

seq1  TACTAGCCTAAGGGTACATAA-TTACATACATAAATGAAAAGGGAG-TAG  1095
      |||||| |||  ||||||||| ||||||||   ||||||| ||||| |||
seq2  TACTAGGCTA--GGTACATAATTTACATAC--TAATGAAATGGGAGTTAG  1094

seq1  ATTTAGTCCTATG  1108
      | |||||||||||
seq2  A-TTAGTCCTATG  1106


| Home | SequenceCutter | Blast | Download |