BAC Information

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BAC

Clone NameB6Ng01-278N19
Chromosome8 (Build37)
Map Location 54,079,054 - 54,209,094
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278N19.bB6Ng01-278N19.g
ACCGA078994GA078995
length660921
definitionB6Ng01-278N19.b B6Ng01-278N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,208,436 - 54,209,094)(54,079,054 - 54,079,974)
sequence
gaattccagtgaatggggtgctattttcatttgctaactgctgggagttg
gagggtcagatgtgtttaaaggtgtagcccttggtaagtcaactatgtgc
taaggatgcctcacttccaagagtagttagataatacaaaatgtactcaa
tggaaagaaacaagaaggaaaaaaatcacacctttgtgccatcataagga
cttggtctcttgttctatttaaaacggagactaataaaccatgccagtag
agaaatccatgacttttattaaaaaatattacattagctgcaattgatga
ctatggcatgtgatgcagtgggagaatgttagaaaatgctacaattatcc
ttatatatggtaattatagagataaacagggtattcagagaggaggtgct
tgaagttctgttggtctaaaagtaactctagaataaatggattctaagtt
ttgccttatataattagggaatctaagttgatgtctactgagatgaagag
ctacagatagatttgctttcatttctttgcttggcttttagtggaaagga
tctcggaaatccaatttagtctgttatgttaaagttgtcacttggttttc
ctcagactgagaagccaaatacgaagacagggatgcattttttttggggg
gggggggggt

gaattctctttgatttgcaatgggcattcctaggcttcctgaagctgtgt
agaattatttttatccaaacccttatgaacattgctttctgcactaaatt
attgtaggtgttttgtaaaagaactcttttttttaacacgaaatttttaa
agtttttcttaagctcacttgctttgtaagttgagggctaccacatataa
taaattatatttactataataaatgtaatataatgtcttcctgctaaaat
acctcatataatactcctgggggttatatattatttaacttgataataaa
atatggttatttgatttcacacataaatatgtgtgagattcttgaatgcc
tgtcagctggcatattaatatgacttgctatttttcttggaatccaagta
aatttagcaacaacttagatctcagaagaaaagtagttgagtctgtttac
ctgtaaaaagatctgagcacaataacagtatttttgatcatgaatatttt
cccttaatttacttaaactttactcaattacaattgtaggaataaataat
tatgctggacagtcaatgcaataatagtaaatatattcaaacacacacac
acaaaaaaaaattccagcagatatgaagacgctgaaggggattgcaacct
cataggaagaacaatatcaactaaccagaccacccagcactccctaaaac
accaaccaaagagtatacatgtagggaatccatggacccagctacacatg
cagcagaaaatggccttatctggcatcagtgggaggataaaaccttggtc
atgtggaggtttgatgccccatcagagcagtgtggcaggactgggtgagt
gggtaaagaagcaccccccatagaggcaaagggtggcagagaggagggat
gggaattggggtttgtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54208436_54209094
seq2: B6Ng01-278N19.b_48_707 (reverse)

seq1  -ACCCCCCCCCCCCCAAAAAAAATGCATCCCTGTCTTCGTATTTGGCTTC  49
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCCCCCCAAAAAAAATGCATCCCTGTCTTCGTATTTGGCTTC  50

seq1  TCAGTCTGAGGAAAACCAAGTGACAACTTTAACATAACAGACTAAATTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGAGGAAAACCAAGTGACAACTTTAACATAACAGACTAAATTGG  100

seq1  ATTTCCGAGATCCTTTCCACTAAAAGCCAAGCAAAGAAATGAAAGCAAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGAGATCCTTTCCACTAAAAGCCAAGCAAAGAAATGAAAGCAAAT  150

seq1  CTATCTGTAGCTCTTCATCTCAGTAGACATCAACTTAGATTCCCTAATTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTAGCTCTTCATCTCAGTAGACATCAACTTAGATTCCCTAATTA  200

seq1  TATAAGGCAAAACTTAGAATCCATTTATTCTAGAGTTACTTTTAGACCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGCAAAACTTAGAATCCATTTATTCTAGAGTTACTTTTAGACCAA  250

seq1  CAGAACTTCAAGCACCTCCTCTCTGAATACCCTGTTTATCTCTATAATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTCAAGCACCTCCTCTCTGAATACCCTGTTTATCTCTATAATTA  300

seq1  CCATATATAAGGATAATTGTAGCATTTTCTAACATTCTCCCACTGCATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATAAGGATAATTGTAGCATTTTCTAACATTCTCCCACTGCATCA  350

seq1  CATGCCATAGTCATCAATTGCAGCTAATGTAATATTTTTTAATAAAAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATAGTCATCAATTGCAGCTAATGTAATATTTTTTAATAAAAGTC  400

seq1  ATGGATTTCTCTACTGGCATGGTTTATTAGTCTCCGTTTTAAATAGAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTCTCTACTGGCATGGTTTATTAGTCTCCGTTTTAAATAGAACA  450

seq1  AGAGACCAAGTCCTTATGATGGCACAAAGGTGTGATTTTTTTCCTTCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAAGTCCTTATGATGGCACAAAGGTGTGATTTTTTTCCTTCTTG  500

seq1  TTTCTTTCCATTGAGTACATTTTGTATTATCTAACTACTCTTGGAAGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCATTGAGTACATTTTGTATTATCTAACTACTCTTGGAAGTGA  550

seq1  GGCATCCTTAGCACATAGTTGACTTACCAAGGGCTACACCTTTAAACACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTTAGCACATAGTTGACTTACCAAGGGCTACACCTTTAAACACA  600

seq1  TCTGACCCTCCAACTCCCAGCAGTTAGCAAATGAAAATAGCACCCCATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCTCCAACTCCCAGCAGTTAGCAAATGAAAATAGCACCCCATTC  650

seq1  ACTGGAATTC  659
      ||||||||||
seq2  ACTGGAATTC  660


seq1: chr8_54079054_54079974
seq2: B6Ng01-278N19.g_66_986

seq1  GAATTCTCTTTGATTTGCAATGGGCATTCCTAGGCTTCCTGAAGCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGATTTGCAATGGGCATTCCTAGGCTTCCTGAAGCTGTGT  50

seq1  AGAATTATTTTTATCCAAACCCTTATGAACATTGCTTTCTGCACTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTTTTATCCAAACCCTTATGAACATTGCTTTCTGCACTAAATT  100

seq1  ATTGTAGGTGTTTTGTAAAAGAACTCTTTTTTTTAACACGAAATTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGTGTTTTGTAAAAGAACTCTTTTTTTTAACACGAAATTTTTAA  150

seq1  AGTTTTTCTTAAGCTCACTTGCTTTGTAAGTTGAGGGCTACCACATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCTTAAGCTCACTTGCTTTGTAAGTTGAGGGCTACCACATATAA  200

seq1  TAAATTATATTTACTATAATAAATGTAATATAATGTCTTCCTGCTAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATATTTACTATAATAAATGTAATATAATGTCTTCCTGCTAAAAT  250

seq1  ACCTCATATAATACTCCTGGGGGTTATATATTATTTAACTTGATAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATATAATACTCCTGGGGGTTATATATTATTTAACTTGATAATAAA  300

seq1  ATATGGTTATTTGATTTCACACATAAATATGTGTGAGATTCTTGAATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTATTTGATTTCACACATAAATATGTGTGAGATTCTTGAATGCC  350

seq1  TGTCAGCTGGCATATTAATATGACTTGCTATTTTTCTTGGAATCCAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTGGCATATTAATATGACTTGCTATTTTTCTTGGAATCCAAGTA  400

seq1  AATTTAGCAACAACTTAGATCTCAGAAGAAAAGTAGTTGAGTCTGTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCAACAACTTAGATCTCAGAAGAAAAGTAGTTGAGTCTGTTTAC  450

seq1  CTGTAAAAAGATCTGAGCACAATAACAGTATTTTTGATCATGAATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAAGATCTGAGCACAATAACAGTATTTTTGATCATGAATATTTT  500

seq1  CCCTTAATTTACTTAAACTTTACTCAATTACAATTGTAGGAATAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATTTACTTAAACTTTACTCAATTACAATTGTAGGAATAAATAAT  550

seq1  TATGCTGGACAGTCAATGCAATAATAGTAAATATATTCAAACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGACAGTCAATGCAATAATAGTAAATATATTCAAACACACACAC  600

seq1  ACAAAAAAAAATTCCAGCAGATATGAAGACGCTGAAGGGGATTGCAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAATTCCAGCAGATATGAAGACGCTGAAGGGGATTGCAACCT  650

seq1  CATAGGAAGAACAATATCAACTAACCAGACCACCCAGCACTCCCTAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAGAACAATATCAACTAACCAGACCACCCAGCACTCCCTAAAAC  700

seq1  ACCAACCAAAGAGTATACATGTAGGGAATCCATGGACCCAGCTACACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAAGAGTATACATGTAGGGAATCCATGGACCCAGCTACACATG  750

seq1  CAGCAGAAAATGGCCTTATCTGGCATCAGTGGGAGGATAAAACCTTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAAATGGCCTTATCTGGCATCAGTGGGAGGATAAAACCTTGGTC  800

seq1  ATGTGGAGGTTTGATGCCCCATCAGAGCAGTGTGGCAGGACTGGGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGGTTTGATGCCCCATCAGAGCAGTGTGGCAGGACTGGGTGAGT  850

seq1  GGGTAAAGAAGCA-CCCCCATAGAGGCAAAGGGGTGGCAGAAGAGGAGGG  899
      ||||||||||||| |||||||||||||||| ||||||||| |||||||||
seq2  GGGTAAAGAAGCACCCCCCATAGAGGCAAA-GGGTGGCAG-AGAGGAGGG  898

seq1  ATGGG-ATTGGGGTTTGTGGGGG  921
      ||||| |||||||||||||||||
seq2  ATGGGAATTGGGGTTTGTGGGGG  921


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