BAC Information

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BAC

Clone NameB6Ng01-279N01
Chromosome8 (Build37)
Map Location 8,451,285 - 8,611,231
singlet/doubletdoublet
Overlap geneLOC100039836
Upstream genenone
Downstream geneEfnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N01.bB6Ng01-279N01.g
ACCGA079697GA079698
length1,1751,139
definitionB6Ng01-279N01.b B6Ng01-279N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,451,285 - 8,452,454)(8,610,118 - 8,611,231)
sequence
gaattccagaggccaggaagttgcacgattccaaacagctatagtgaaca
cacaagacatcaacttgagcactttgcaattaatttatttcagccactta
attttatccatcatctccaaaaagttatgattcacataaataacctcaaa
atggagaaagctattatataattcacagctttcctcccatttgtgcatgg
ttaaacatgacgcaaacaattgctcttcggtataaatccatcagagggac
ttgataattacatatgcttattttatataaaatgagggtgactaattaaa
gtctgagaaaatttgatgctaaaatgttgaggccttcaatgcaaggtgat
tatacctttctgtctttttttccccactatattaaacaattaactcatct
aatacccccattagccataactgcctaattttagagatggaagagtgaaa
ttgttcatggttcgacatcaacctggccagagaatgtcattttactagtg
aagacagagggcatctggttttcagtttggggttgaagcatatcttgaca
caaatgcatatcattttggaaattgttctggcgcactgaattaaatgatc
taatcgcacttttgtcattattatgaagaactcacacttgtcaggtaatg
gaattaaattcaaatagaaatgctcatatatttaatggctaattgggaag
aataaggttttaaaattcaaaattcatttaacaaagacccactgagcaat
tatgctcatgaatatagcacttgaaactgaaaaacataaggggatttgaa
atgttgaagattggagacacacactggaaagatcggtctgccttcctaca
cctacccaccatttgctcggtttccatcccaattttgctacaagcttgtt
gtcccgttcactcctctctttccggctactaaacccagggagagtcctgt
cttggtcctatgctggtttcctcggttcttgcatcagctacaggggagcc
tctggctgctctgcctttcctagagctgaacttcttctcttgcagtgttg
aggaggcggggcttacgagatgctgaattcttgttttgttttcatgttgt
gggacagaagtgaatgaaaaatccaaagctctccatgcttcctgtatcct
gggctcaggcagcaggcactgtggg

gaattccaggcaaccaagttctgctaagtgaaggagaaccagtctttccc
agggattatctaataccaaatggtcagccccgaatcctatatatacaagt
aacactaaacatattcagcacatctgtggaaactccacccttgaggaccc
acatctggaaccagaaaaaggagattaacggctagacacataagtttaga
ggtacacacatggccacatggctctaattgtatgttcactgtatgtgtct
ctctatgttcctctgccacatacacatggtcatatggttttactgtatct
tcactgggtgtctctctctctcttccactcacttcaagaagcatagaata
agttttagggacacaggcagagctgatctgtaagcaggatcatgctatac
agcgtgagggatattttctaaaaggaatatgcatctagaatcattctgcc
gtttggatttaaaaacagggattcacactgaaggaagcccagggtgactt
agcgcttactgtgtagtccaggctgatctcgaacttgtgcaatccccctg
cctcagcttcttgagtactgactaagattataggtacaagccatcaagcc
taaattttctttattaaataaatgactgagaactataaactgagatctat
aaaagcagttctattaactagagagagacagagacgggagagacagagag
acacacagagagattcctgtacttgaagccaggccctggtttcagtaggt
ctgggagtggcagcgcatttcccccccagcaaccgtataaaccacccata
acagtttggagagttttctcccatgagaatggtttcctttttaataaagc
tcaatctcttcaattaaaggattaaagaagctagcataattcctctttag
cacctaggaagatgagcacgggcttaaagatacatgtgtttgtacatccc
accaggtctttcccatgtattcagatctgaggactgaacttgaatttcct
ccccttcttagacactgcttctgcaacccacgccaccccacttttggcga
ggggttttaaaatcgggcttagtctcaaaccgatttggccacaagcctta
ctctctgagattctttcactgtactctgggctctgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_8451285_8452454
seq2: B6Ng01-279N01.b_43_1217

seq1  GAATTCCAGAGGCCAGGAAGTTGCACGATTCCAAACAGCTATAGTGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGCCAGGAAGTTGCACGATTCCAAACAGCTATAGTGAACA  50

seq1  CACAAGACATCAACTTGAGCACTTTGCAATTAATTTATTTCAGCCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACATCAACTTGAGCACTTTGCAATTAATTTATTTCAGCCACTTA  100

seq1  ATTTTATCCATCATCTCCAAAAAGTTATGATTCACATAAATAACCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCCATCATCTCCAAAAAGTTATGATTCACATAAATAACCTCAAA  150

seq1  ATGGAGAAAGCTATTATATAATTCACAGCTTTCCTCCCATTTGTGCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAGCTATTATATAATTCACAGCTTTCCTCCCATTTGTGCATGG  200

seq1  TTAAACATGACGCAAACAATTGCTCTTCGGTATAAATCCATCAGAGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATGACGCAAACAATTGCTCTTCGGTATAAATCCATCAGAGGGAC  250

seq1  TTGATAATTACATATGCTTATTTTATATAAAATGAGGGTGACTAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATTACATATGCTTATTTTATATAAAATGAGGGTGACTAATTAAA  300

seq1  GTCTGAGAAAATTTGATGCTAAAATGTTGAGGCCTTCAATGCAAGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGAAAATTTGATGCTAAAATGTTGAGGCCTTCAATGCAAGGTGAT  350

seq1  TATACCTTTCTGTCTTTTTTTCCCCACTATATTAAACAATTAACTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTTCTGTCTTTTTTTCCCCACTATATTAAACAATTAACTCATCT  400

seq1  AATACCCCCATTAGCCATAACTGCCTAATTTTAGAGATGGAAGAGTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCCCATTAGCCATAACTGCCTAATTTTAGAGATGGAAGAGTGAAA  450

seq1  TTGTTCATGGTTCGACATCAACCTGGCCAGAGAATGTCATTTTACTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATGGTTCGACATCAACCTGGCCAGAGAATGTCATTTTACTAGTG  500

seq1  AAGACAGAGGGCATCTGGTTTTCAGTTTGGGGTTGAAGCATATCTTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGGGCATCTGGTTTTCAGTTTGGGGTTGAAGCATATCTTGACA  550

seq1  CAAATGCATATCATTTTGGAAATTGTTCTGGCGCACTGAATTAAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCATATCATTTTGGAAATTGTTCTGGCGCACTGAATTAAATGATC  600

seq1  TAATCGCACTTTTGTCATTATTATGAAGAACTCACACTTGTCAGGTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGCACTTTTGTCATTATTATGAAGAACTCACACTTGTCAGGTAATG  650

seq1  GAATTAAATTCAAATAGAAATGCTCATATATTTAATGGCTAATTGGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATTCAAATAGAAATGCTCATATATTTAATGGCTAATTGGGAAG  700

seq1  AATAAGGTTTTAAAATTCAAAATTCATTTAACAAAGACCCACTGAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTTTTAAAATTCAAAATTCATTTAACAAAGACCCACTGAGCAAT  750

seq1  TATGCTCATGAATATAGCACTTGAAACTGAAAAACATAAGGGGATTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCATGAATATAGCACTTGAAACTGAAAAACATAAGGGGATTTGAA  800

seq1  ATGTTGAAGATTGGAGACACACACTGGAAAGATCGGTCTGCCTTCCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAGATTGGAGACACACACTGGAAAGATCGGTCTGCCTTCCTACA  850

seq1  CCTACCCACCATTTGCTCGGTTTCCATCCCAATTTTGCTACAAGCTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCACCATTTGCTCGGTTTCCATCCCAATTTTGCTACAAGCTTGTT  900

seq1  GTCCCGTTCACTCCTCTCTTTCCGGCTACTAAACCCAGGGAGAGTCCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCCCGTTCACTCCTCTCTTTCCGGCTACTAAACCCAGGGAGAGT-CCTG  949

seq1  TCTTGGTCCTATGCTGG-TTCCTCGGTTCTTGCATCAGCTACAGGGGAGC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTGGTCCTATGCTGGTTTCCTCGGTTCTTGCATCAGCTACAGGGGAGC  999

seq1  CTCTGGCTGCTCTGCC-TTCCTAGAGCCTGAACTTCCTTCCTCTTGCAGT  1048
      |||||||||||||||| ||||||||| |||||||||  | ||||||||||
seq2  CTCTGGCTGCTCTGCCTTTCCTAGAG-CTGAACTTC--TTCTCTTGCAGT  1046

seq1  G-TGA-GAGGCGGGGCTTACGAAGATGCTGAAT--CTGTTT--GTTTCGT  1092
      | ||| ||||||||||||||| |||||||||||   |||||   |||| |
seq2  GTTGAGGAGGCGGGGCTTACG-AGATGCTGAATTCTTGTTTTGTTTTCAT  1095

seq1  GTTGTGGGACAGGAAGTG-ATGAAAA--TCAAAGCTCTTCATGCTT-CTG  1138
      ||||||||||| |||||| |||||||   ||||||||| ||||||| |||
seq2  GTTGTGGGACA-GAAGTGAATGAAAAATCCAAAGCTCTCCATGCTTCCTG  1144

seq1  TATCGTGGGGTCAGGCAGCAGGGCACTGTGGG  1170
      |||| |||| |||||||||| |||||||||||
seq2  TATCCTGGGCTCAGGCAGCA-GGCACTGTGGG  1175


seq1: chr8_8610118_8611231
seq2: B6Ng01-279N01.g_66_1204 (reverse)

seq1  AAATCAGACCCAGGAGGACAGTGAA--GATC----AGAGTAAGTGCTTGT  44
      |||||||| ||  ||| ||||||||   |||    |||||||| ||||||
seq2  AAATCAGAGCCCAGAGTACAGTGAAAGAATCTCAGAGAGTAAG-GCTTGT  49

seq1  -GCAAAATC-GTTTGAGACT-AGCCCGTTTTTAAAA-CCCTGGC--AAAG  88
       || ||||| |||||||||| |||||| |||||||| |||| ||  ||||
seq2  GGCCAAATCGGTTTGAGACTAAGCCCGATTTTAAAACCCCTCGCCAAAAG  99

seq1  T-GGGTGG-GTGGG-TGCAG-AGCAGTGTCTAAGAAGGG--AGAAATTCA  132
      | |||||| ||||| ||||| ||||||||||||||||||   ||||||||
seq2  TGGGGTGGCGTGGGTTGCAGAAGCAGTGTCTAAGAAGGGGAGGAAATTCA  149

seq1  AGTTCAGTCCTCAGATCTGAATTACAT-GGAAAGA-CTGGTGGGATGTAC  180
      ||||||||||||||||||||| ||||| ||||||| ||||||||||||||
seq2  AGTTCAGTCCTCAGATCTGAA-TACATGGGAAAGACCTGGTGGGATGTAC  198

seq1  AAACACATGTATCTTT-AGCCC-TGCTCATCCTCCTAGCTGCT-AAGAGG  227
      |||||||||||||||| ||||| |||||||| |||||| |||| ||||||
seq2  AAACACATGTATCTTTAAGCCCGTGCTCATCTTCCTAGGTGCTAAAGAGG  248

seq1  AATTATGCTAGC-TCTTTAATCCTTTAATTGAAGAGATTGAGCCTTATTA  276
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  AATTATGCTAGCTTCTTTAATCCTTTAATTGAAGAGATTGAGCTTTATTA  298

seq1  AAAAGGAAACCATTCTCATGGGAGAAAACTCTCCAAACTGTTATGGGTGG  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAACCATTCTCATGGGAGAAAACTCTCCAAACTGTTATGGGTGG  348

seq1  TTTATACGGTTGCTGGGGGGGAAATGCGCTGCCACTCCCAGACCTACTG-  375
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTATACGGTTGCTGGGGGGGAAATGCGCTGCCACTCCCAGACCTACTGA  398

seq1  AACCAGGGCCTGGCTTCAAGTACAGGAATCTCTCTGTGTGTCTCTCTGTC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGCCTGGCTTCAAGTACAGGAATCTCTCTGTGTGTCTCTCTGTC  448

seq1  TCT-CCGTCTCTGTCTCTCTCTAGTTAATAGAACTGCTTTTATAGATCTC  474
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGTCTCTGTCTCTCTCTAGTTAATAGAACTGCTTTTATAGATCTC  498

seq1  AG-TTATAGTTCTCAGTCATTTATTTAATAAAGAAAATTTAGGCTTGATG  523
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAGTTCTCAGTCATTTATTTAATAAAGAAAATTTAGGCTTGATG  548

seq1  GCTTGTACCTATAATCTTAGTCAGTACTCAAGAAGCTGAGGCAGGGGGAT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTACCTATAATCTTAGTCAGTACTCAAGAAGCTGAGGCAGGGGGAT  598

seq1  TGCACAAGTTCGAGATCAGCCTGGACTACACAGTAAGCGCTAAGTCACCC  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGTTCGAGATCAGCCTGGACTACACAGTAAGCGCTAAGTCACCC  648

seq1  TGGGCTTCCTTCAGTGTGAATCCCTGTTTTTAAATCCAAACGGCAGAATG  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCCTTCAGTGTGAATCCCTGTTTTTAAATCCAAACGGCAGAATG  698

seq1  ATTCTAGATGCATATTCCTTTTAGAAAATATCCCTCACGCTGTATAGCAT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATGCATATTCCTTTTAGAAAATATCCCTCACGCTGTATAGCAT  748

seq1  GATCCTGCTTACAGATCAGCTCTGCCTGTGTCCCTAAAACTTATTCTATG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCTTACAGATCAGCTCTGCCTGTGTCCCTAAAACTTATTCTATG  798

seq1  CTTCTTGAAGTGAGTGGAAGAGAGAGAGAGACACCCAGTGAAGATACAGT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAAGTGAGTGGAAGAGAGAGAGAGACACCCAGTGAAGATACAGT  848

seq1  AAAACCATATGACCATGTGTATGTGGCAGAGGAACATAGAGAGACACATA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATATGACCATGTGTATGTGGCAGAGGAACATAGAGAGACACATA  898

seq1  CAGTGAACATACAATTAGAGCCATGTGGCCATGTGTGTACCTCTAAACTT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACATACAATTAGAGCCATGTGGCCATGTGTGTACCTCTAAACTT  948

seq1  ATGTGTCTAGCCGTTAATCTCCTTTTTCTGGTTCCAGATGTGGGTCCTCA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTAGCCGTTAATCTCCTTTTTCTGGTTCCAGATGTGGGTCCTCA  998

seq1  AGGGTGGAGTTTCCACAGATGTGCTGAATATGTTTAGTGTTACTTGTATA  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGAGTTTCCACAGATGTGCTGAATATGTTTAGTGTTACTTGTATA  1048

seq1  TATAGGATTCGGGGCTGACCATTTGGTATTAGATAATCCCTGGGAAAGAC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATTCGGGGCTGACCATTTGGTATTAGATAATCCCTGGGAAAGAC  1098

seq1  TGGTTCTCCTTCACTTAGCAGAACTTGGTTGCCTGGAATTC  1114
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCCTTCACTTAGCAGAACTTGGTTGCCTGGAATTC  1139


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