BAC Information

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BAC

Clone NameB6Ng01-280M09
Chromosome8 (Build37)
Map Location 24,270,495 - 24,271,526
singlet/doubletsinglet
Overlap genenone
Upstream geneNek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3
Downstream geneAgpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M09.bB6Ng01-280M09.g
ACCGA080417GA080418
length1,2581,040
definitionB6Ng01-280M09.b B6Ng01-280M09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgctgtacctctttcagcaaatataagatcagcaaagataaa
gatgtaagaccaacaaagtgttataaagttagctgtgctagcttgccacc
actgtccatggagtcctatttacattctctccaaaaaccacagatcctcc
cacaggtgccgcctcagcaaaacaacacaggagtcagcctcaccacttga
gcctgcatcatgtgacccgattagaaatttccacttcagactaaaactct
gaactgcaaggcagctccatttaaatattttcctttataagagtgtcaca
gtcataagtctcttcagagcaatagtaatcctaccatgagaacatcaaga
ggactatccaccatagtcaagttggcttcaccccagagatggaaggatag
cccaaaatatgtctatcggtaaacataatccatcacatagaaagactaac
ataaaggaatcacatgatcatctcattatgtccagaaaagggttttgaca
aaatccaaagtgcttttgtaataaatgacctggagaaattaggaatatga
gggacatacctcaacataataaaggcagtttacagaaagcccacagctaa
cataatcccaaacagaaagaaactcaagacggttccattaaaataaaaaa
acaacacaaggatgtccactccatgccagttcaatgtagtacttgaagtc
acagctagagcggtaagacacctgaaggagatacaaataagaatgggaga
agccaaagtatccttatttatagacaatatgattttatacataagagact
taaagactctaccaggaaaactttacagttgataaacacttttagcaaag
tggcaatgctataaaatagacacacaaaaatcagtagcctttctacatag
aaattacaaacatactgagaaagaaacaaagggaatatcttttgcagtag
tctcagaaataataccttgggagtaactcaaaccaagcaagtaaagagtt
gtatagtaaacactttaaccacattggaggaaaaagaaaaattggaggat
gaaaatgtcactcatgtttggtggaatcaatagggattggacattgtgga
aaacggacatcctaaccaacaacatctattaaattatgcaattccctcat
caagttcatacactcccttgcaggattggaaacaagtctttactttattg
aaatcctaaaaaggtccaggaatatagccaagagctcaactctggtagaa
tatattag
gaattccataaccctcctaagggacaagggacagggaagccagtggacgg
agctgcgccactctctgcacccttgggtgagctgctccaacttccgtgac
tcagttcactcatctgtcaatggaataataattatgtatgcatactttgt
aataagattgaacaagattaaaataatgaacatggcatgagggagcaggc
ctttaatcccagcactcaagaggaagagacaggtgaggccaaaggcagcc
tggttgacttaacagttctaggctagccaggcctccatcaaaaagagagg
caaacgctgagattccacatctggaagacagttagaccatgtcaaagaaa
aaagaaaaagaaaagaaatgaaatgaatgtagctggcagataccaacagg
aaataccattcttaaacactgagagccttgcttccaacacatgtctccca
caagattgctgggtagaaacttgactcccacaggactaaggagtgaagcc
tttggggaggtggtccgccctggaaaactccaccatcatgcactaggctg
gtgacccttaaaaggagttcacctcttttgggtccttctgtctcttcaaa
gtgaggacacagttcgagttacttagaatcagaaatgagtgctgaactgg
gtggtaccttagacttagtctccaagtactggaatcacagggctcaggct
catagcaggatggatgtgtgaaagacacaggccagtgtgtggctccccac
tttggcaagtggtagctggagcgttgggaccagtgcattcatttttcttt
aaggctggtaccctgactatagcctgaggctggaagacaagttctgtgag
atggatggggatccagtgaactgtgctctgagtccagaagggcatgggca
ctttaataccacacaccctactcttcctcttccggtcacactagtgtcaa
agctgggaaaacatagctactggtttcctttacgtgcccaccacccccca
ttgggcccagcctgctgcctggggttggggggggtggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24270495_24271526
seq2: B6Ng01-280M09.g_70_1109

seq1  GAATTCCATAACCCTCCTAAGGGACAAGGGACAGGGAAGCCAGTGGACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACCCTCCTAAGGGACAAGGGACAGGGAAGCCAGTGGACGG  50

seq1  AGCTGCGCCACTCTCTGCACCCTTGGGTGAGCTGCTCCAACTTCCGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGCCACTCTCTGCACCCTTGGGTGAGCTGCTCCAACTTCCGTGAC  100

seq1  TCAGTTCACTCATCTGTCAATGGAATAATAATTATGTATGCATACTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCACTCATCTGTCAATGGAATAATAATTATGTATGCATACTTTGT  150

seq1  AATAAGATTGAACAAGATTAAAATAATGAACATGGCATGAGGGAGCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTGAACAAGATTAAAATAATGAACATGGCATGAGGGAGCAGGC  200

seq1  CTTTAATCCCAGCACTCAAGAGGAAGAGACAGGTGAGGCCAAAGGCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTCAAGAGGAAGAGACAGGTGAGGCCAAAGGCAGCC  250

seq1  TGGTTGACTTAACAGTTCTAGGCTAGCCAGGCCTCCATCAAAAAGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACTTAACAGTTCTAGGCTAGCCAGGCCTCCATCAAAAAGAGAGG  300

seq1  CAAACGCTGAGATTCCACATCTGGAAGACAGTTAGACCATGTCAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCTGAGATTCCACATCTGGAAGACAGTTAGACCATGTCAAAGAAA  350

seq1  AAAGAAAAAGAAAAGAAATGAAATGAATGTAGCTGGCAGATACCAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAGAAATGAAATGAATGTAGCTGGCAGATACCAACAGG  400

seq1  AAATACCATTCTTAAACACTGAGAGCCTTGCTTCCAACACATGTCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATTCTTAAACACTGAGAGCCTTGCTTCCAACACATGTCTCCCA  450

seq1  CAAGATTGCTGGGTAGAAACTTGACTCCCACAGGACTAAGGAGTGAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGCTGGGTAGAAACTTGACTCCCACAGGACTAAGGAGTGAAGCC  500

seq1  TTTGGGGAGGTGGTCCGCCCTGGAAAACTCCACCATCATGCACTAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAGGTGGTCCGCCCTGGAAAACTCCACCATCATGCACTAGGCTG  550

seq1  GTGACCCTTAAAAGGAGTTCACCTCTTTTGGGTCCTTCTGTCTCTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTTAAAAGGAGTTCACCTCTTTTGGGTCCTTCTGTCTCTTCAAA  600

seq1  GTGAGGACACAGTTCGAGTTACTTAGAATCAGAAATGAGTGCTGAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACACAGTTCGAGTTACTTAGAATCAGAAATGAGTGCTGAACTGG  650

seq1  GTGGTACCTTAGACTTAGTCTCCAAGTACTGGAATCACAGGGCTCAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACCTTAGACTTAGTCTCCAAGTACTGGAATCACAGGGCTCAGGCT  700

seq1  CATAGCAGGATGGATGTGTGAAAGACACAGGCCAGTGTGTGGCTCCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGGATGGATGTGTGAAAGACACAGGCCAGTGTGTGGCTCCCCAC  750

seq1  TTTGGCAAGTGGTAGCTGGAGCGTTGGGACCAAGTGCATTCATTTTTCTT  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTGGCAAGTGGTAGCTGGAGCGTTGGGACC-AGTGCATTCATTTTTCTT  799

seq1  TAAGGCTGGTACCCTGACTATAGCCTGAGGCTGGAAGACAAGTTCTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTGGTACCCTGACTATAGCCTGAGGCTGGAAGACAAGTTCTGTGA  849

seq1  GATGGAT-GGGATCCAGTGAACTGTGCTCTGAGTCCAGAAGGGCATGGGC  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGGGATCCAGTGAACTGTGCTCTGAGTCCAGAAGGGCATGGGC  899

seq1  AC-TTAATACCACACACCCTACTCTTCCTCTTCCGGTTCACACTAGTGGT  948
      || ||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  ACTTTAATACCACACACCCTACTCTTCCTCTTCCGG-TCACACTAGT-GT  947

seq1  CAAGGCTGGG-ACACATAGCTACTGG-TTCCTTTACGTGCCCAC--ACCC  994
      ||| |||||| | ||||||||||||| |||||||||||||||||   |||
seq2  CAAAGCTGGGAAAACATAGCTACTGGTTTCCTTTACGTGCCCACCACCCC  997

seq1  CCAT--GGGCCAG-CTGCTGCCTGGGG--GTGGGGGGTGGGGC  1032
      ||||  || |||| |||||||||||||  | ||||||||||||
seq2  CCATTGGGCCCAGCCTGCTGCCTGGGGTTGGGGGGGGTGGGGC  1040