BAC Information

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BAC

Clone NameB6Ng01-281M04
Chromosome8 (Build37)
Map Location 89,891,505 - 89,992,314
singlet/doubletdoublet
Overlap genenone
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
Downstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M04.bB6Ng01-281M04.g
ACCGA081154GA081155
length1,1041,080
definitionB6Ng01-281M04.b B6Ng01-281M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,891,505 - 89,892,610)(89,991,221 - 89,992,314)
sequence
gaattccatccttagtttgtaaaatgctacaaaatagttaatgcacccaa
tttcatgcatgggccttagtttgccaatttctgccctagaattaacttaa
ttgttcattctttcctctcttccttccctccccctctctctgttttatga
tgacctcatcaactccaggttgttcttaggttttccattactttcaggat
ttggacaaacacacaggatatacaaatgccactggagagagaatgtcttc
agcaaatttcatcttccctctacactagaggcaagatacagcatcggcaa
gcatcttgagagccagggggaaggttgtagagcttaaacccacctaatag
aactgaaaagatcccacagtcctgatgccagagttctgtaaatctgcctg
gccacaccctggaaggcctctcgtacagctcttagtgtacaactctgcct
gcagtgtggacaaagactgccatcccatttgtgcagctggaaatcactgc
tgagaaaggttaaataactttctcccaggctcagcacgccaaggacagaa
agcaagttggatctgcaattttttcctctcctagggctgaagagttagaa
gttcgtccaagaatgcaagcaattaagtcaggtttcatttgctgagtgtg
gggcagagtctactctgctgggtagcacttctatcctcacgtctcctccc
tggggttatgttttggcatttctcttggccttcagaacacagcctcacat
actcttgtgccacagaatagtctcaagcactaatcgaaccatcagtggta
ttgtgacggactgccatgatggagacagatggtgtttgccttcccagctc
tggtcttcatgatgaaacccaccaggttccttttgggaggaataaccccc
ttcttgtgtagcctgttagttcatgaaactaactctgtgactcagtccta
gctagtcataacattgcattagccctaggtctggagatgtgctctagagt
gactttggggttagtaattgggcaaatccagaagtgggaaccattggcaa
agaaaatgtctgtactttggttacttagctaggacaacatgagctagtat
ttcc
gaattcttttccttttcctttcctttccttttttttttttttttttcttt
ttgataagagctttgtcttcggtctttattctgggaaagacaggtcaagg
acaagagagtcttcgctcgggaactaccttgatcaacaactcagctgcct
gagcctgccattctaagtgtagctccactgtccaaggcttacagccagtg
cagtcaaggctaagtgcctgctactaatgcaaatgttcccagaacacctt
ggaactcggaggactttctgaatgctgtccattccttttcctaagtgcag
aactatcccaggtctagtgtccaggggctctggtcctggggaaccaccaa
gctgggttccacctgggtgacttgggcaagtctccctgccctcaggctac
ccctctgtctaaaggcaggaaggaatctaaacatctctaagagtccctcc
tgttctggggacccagccattctggaaacaggggcatacaggttccattg
cactacacactggattgaagggcaggggttgtgggttcccactgggccca
gatcagaatcccaacaaaggaagaaatgccagtgggcccagagaaagaag
aggaaaagttcttcctgattctctcgcgctctgcatggcccctggtagga
ctgggtcgctgcttctgaggatgccattgaaaacccattttcacctgggt
ccccacctctttcctctgcctgtcagccttttcctgtgcctcctgtgttg
atctctctgtgtacctacatatgccaccccagccttgaaattgaagctac
actttccctttctttctttctttctttcttctttcttcttttctttcttc
ttcttttttcttcaaaatcacattggacagtggacctaagttcagctaga
aggccaccttctccttgggagctgtcccaactcacagagcagctaatgct
ctccctaggagccctactgcctgtttagctcctttgccttcaggagggac
cagtctggtgctggcaagtaggagtcatttggggctggatgtctcctttt
gctttggttcacatagatgccacccacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_89891505_89892610
seq2: B6Ng01-281M04.b_43_1146

seq1  GAATTCCATCCTTAGTTTGTAAAATGCTACAAAATAGTTAATGCACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTTAGTTTGTAAAATGCTACAAAATAGTTAATGCACCCAA  50

seq1  TTTCATGCATGGGCCTTAGTTTGCCAATTTCTGCCCTAGAATTAACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCATGGGCCTTAGTTTGCCAATTTCTGCCCTAGAATTAACTTAA  100

seq1  TTGTTCATTCTTTCCTCTCTTCCTTCCCTCCCCCTCTCTCTGTTTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTCTTTCCTCTCTTCCTTCCCTCCCCCTCTCTCTGTTTTATGA  150

seq1  TGACCTCATCAACTCCAGGTTGTTCTTAGGTTTTCCATTACTTTCAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATCAACTCCAGGTTGTTCTTAGGTTTTCCATTACTTTCAGGAT  200

seq1  TTGGACAAACACACAGGATATACAAATGCCACTGGAGAGAGAATGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAACACACAGGATATACAAATGCCACTGGAGAGAGAATGTCTTC  250

seq1  AGCAAATTTCATCTTCCCTCTACACTAGAGGCAAGATACAGCATCGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTCATCTTCCCTCTACACTAGAGGCAAGATACAGCATCGGCAA  300

seq1  GCATCTTGAGAGCCAGGGGGAAGGTTGTAGAGCTTAAACCCACCTAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGAGAGCCAGGGGGAAGGTTGTAGAGCTTAAACCCACCTAATAG  350

seq1  AACTGAAAAGATCCCACAGTCCTGATGCCAGAGTTCTGTAAATCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAGATCCCACAGTCCTGATGCCAGAGTTCTGTAAATCTGCCTG  400

seq1  GCCACACCCTGGAAGGCCTCTCGTACAGCTCTTAGTGTACAACTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCTGGAAGGCCTCTCGTACAGCTCTTAGTGTACAACTCTGCCT  450

seq1  GCAGTGTGGACAAAGACTGCCATCCCATTTGTGCAGCTGGAAATCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGGACAAAGACTGCCATCCCATTTGTGCAGCTGGAAATCACTGC  500

seq1  TGAGAAAGGTTAAATAACTTTCTCCCAGGCTCAGCACGCCAAGGACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGTTAAATAACTTTCTCCCAGGCTCAGCACGCCAAGGACAGAA  550

seq1  AGCAAGTTGGATCTGCAATTTTTTCCTCTCCTAGGGCTGAAGAGTTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTGGATCTGCAATTTTTTCCTCTCCTAGGGCTGAAGAGTTAGAA  600

seq1  GTTCGTCCAAGAATGCAAGCAATTAAGTCAGGTTTCATTTGCTGAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTCCAAGAATGCAAGCAATTAAGTCAGGTTTCATTTGCTGAGTGTG  650

seq1  GGGCAGAGTCTACTCTGCTGGGTAGCACTTCTATCCTCACGTCTCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGTCTACTCTGCTGGGTAGCACTTCTATCCTCACGTCTCCTCCC  700

seq1  TGGGGTTATGTTTTGGCATTTCTCTTGGCCTTCAGAACACAGCCTCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTATGTTTTGGCATTTCTCTTGGCCTTCAGAACACAGCCTCACAT  750

seq1  ACTCTTGTGCCACAGAATAGTCTCAAGCACTAATCGAACCATCAGTGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTGCCACAGAATAGTCTCAAGCACTAATCGAACCATCAGTGGTA  800

seq1  TTGTGACGGACTGCCATGATGGAGACAGATGGTGTTTGCCTTCCCAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACGGACTGCCATGATGGAGACAGATGGTGTTTGCCTTCCCAGCTC  850

seq1  TGGTCTTCATGATGAAACCCACCAGGTTCC-TTTGGGAGGAATAACCCCC  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGTCTTCATGATGAAACCCACCAGGTTCCTTTTGGGAGGAATAACCCCC  900

seq1  TTCTTGTGTAGCCTGTTAGTTCATGAAACTAACTCTGTGACTCAGTCCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGTAGCCTGTTAGTTCATGAAACTAACTCTGTGACTCAGTCCTA  950

seq1  GCTAGTCATAACATTGCA-TAGCCCTAGGTCTGGAGATGTGCTCTAGAAG  998
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GCTAGTCATAACATTGCATTAGCCCTAGGTCTGGAGATGTGCTCTAG-AG  999

seq1  TGACTTTGGGGTAGGTAAATGGGCAAAATCCAGAAGTGGGAACCATTGGC  1048
      ||||||||||||  |||| ||||| |||||||||||||||||||||||||
seq2  TGACTTTGGGGTTAGTAATTGGGC-AAATCCAGAAGTGGGAACCATTGGC  1048

seq1  AAAGAAAAATGTCTGTACTTTGGTTACTTAGCTAGGACAACATGAGGCTA  1098
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAG-AAAATGTCTGTACTTTGGTTACTTAGCTAGGACAACATGA-GCTA  1096

seq1  GTATTTCC  1106
      ||||||||
seq2  GTATTTCC  1104

seq1: chr8_89991221_89992314
seq2: B6Ng01-281M04.g_67_1146 (reverse)

seq1  AATGTGGGTGGCCATTCTATGTGAAACCCAAAGCAAAAAAGGGAGACAAT  50
      ||||||||||||   ||||||||||  |||||||||||   |||||||  
seq2  AATGTGGGTGGC--ATCTATGTGAA--CCAAAGCAAAA---GGAGACA--  41

seq1  CCCAGCCCCAAATGACTCCTTCCCTGCCAGCACCAGACTGGGCCCTCCCT  100
       |||||||||||||||||| | | ||||||||||||||||| ||||||  
seq2  TCCAGCCCCAAATGACTCC-TACTTGCCAGCACCAGACTGGTCCCTCC--  88

seq1  GGAAGGC-AAGGAGCT-AACAGGCAGTAGGCCTCCTAGGGAGAGCATTAG  148
       |||||| |||||||| ||||||||||||| |||||||||||||||||||
seq2  TGAAGGCAAAGGAGCTAAACAGGCAGTAGGGCTCCTAGGGAGAGCATTAG  138

seq1  CTGCTCTGTGAGTTGGGACAGCTCCCAAGGAG-AGGTGGCCTTCTAGCTG  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCTCTGTGAGTTGGGACAGCTCCCAAGGAGAAGGTGGCCTTCTAGCTG  188

seq1  AACTTAGGTCCACTGTCCAATGTGATTTTGAAAGAAAAAAAGAAAGAAAG  247
      ||||||||||||||||||||||||||||||||   |||||||||   |||
seq2  AACTTAGGTCCACTGTCCAATGTGATTTTGAA--GAAAAAAGAA--GAAG  234

seq1  AAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAAAGTG  297
      ||||||||   ||||||| |||||||||||||||||||||||||||||||
seq2  AAAGAAAA--GAAGAAAG-AAGAAAGAAAGAAAGAAAGAAAGGGAAAGTG  281

seq1  TAGCTTCAATTTCAAGGCTGGGGTGGCATATGTAGGTACACAGAGAGATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCAATTTCAAGGCTGGGGTGGCATATGTAGGTACACAGAGAGATC  331

seq1  AACACAGGAGGCACAGGAAAAGGCTGACAGGCAGAGG-AAGAGGTGGGGA  396
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACACAGGAGGCACAGGAAAAGGCTGACAGGCAGAGGAAAGAGGTGGGGA  381

seq1  CCCAGGTGAAAATGGG-TTTCAATGGCATCCTCAGAAGCAGCGACCCAGT  445
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCAGGTGAAAATGGGTTTTCAATGGCATCCTCAGAAGCAGCGACCCAGT  431

seq1  CCTACCAGGGGCCATGCAGAGCGCGAGAGAATCAGGAAGAACTTTTCCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGGGGCCATGCAGAGCGCGAGAGAATCAGGAAGAACTTTTCCTC  481

seq1  TTCTTTCTCTGGGCCCACTGGCATTTCTTCCTTTGTTGGGATTCTGATCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTGGGCCCACTGGCATTTCTTCCTTTGTTGGGATTCTGATCT  531

seq1  GGGCCCAGTGGGAACCCACAACCCCTGCCCTTCAATCCAGTGTGTAGTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGTGGGAACCCACAACCCCTGCCCTTCAATCCAGTGTGTAGTGC  581

seq1  AATGGAACCTGTATGCCCCTGTTTCCAGAATGGCTGGGTCCCCAGAACAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACCTGTATGCCCCTGTTTCCAGAATGGCTGGGTCCCCAGAACAG  631

seq1  GAGGGACTCTTAGAGATGTTTAGATTCCTTCCTGCCTTTAGACAGAGGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACTCTTAGAGATGTTTAGATTCCTTCCTGCCTTTAGACAGAGGGG  681

seq1  TAGCCTGAGGGCAGGGAGACTTGCCCAAGTCACCCAGGTGGAACCCAGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAGGGCAGGGAGACTTGCCCAAGTCACCCAGGTGGAACCCAGCT  731

seq1  TGGTGGTTCCCCAGGACCAGAGCCCCTGGACACTAGACCTGGGATAGTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTCCCCAGGACCAGAGCCCCTGGACACTAGACCTGGGATAGTTC  781

seq1  TGCACTTAGGAAAAGGAATGGACAGCATTCAGAAAGTCCTCCGAGTTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTAGGAAAAGGAATGGACAGCATTCAGAAAGTCCTCCGAGTTCCA  831

seq1  AGGTGTTCTGGGAACATTTGCATTAGTAGCAGGCACTTAGCCTTGACTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCTGGGAACATTTGCATTAGTAGCAGGCACTTAGCCTTGACTGC  881

seq1  ACTGGCTGTAAGCCTTGGACAGTGGAGCTACACTTAGAATGGCAGGCTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTAAGCCTTGGACAGTGGAGCTACACTTAGAATGGCAGGCTCA  931

seq1  GGCAGCTGAGTTGTTGATCAAGGTAGTTCCCGAGCGAAGACTCTCTTGTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGAGTTGTTGATCAAGGTAGTTCCCGAGCGAAGACTCTCTTGTC  981

seq1  CTTGACCTGTCTTTCCCAGAATAAAGACCGAAGACAAAGCTCTTATCAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCTGTCTTTCCCAGAATAAAGACCGAAGACAAAGCTCTTATCAAA  1031

seq1  AAGAAAAAAAAAAAAAAAAAAGGAAAGGAAAGGAAAAGGAAAAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAAAAAAAAAAGGAAAGGAAAGGAAAAGGAAAAGAATTC  1080