BAC Information

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BAC

Clone NameB6Ng01-281N10
Chromosome8 (Build37)
Map Location 127,148,461 - 127,149,620
singlet/doubletsinglet
Overlap genenone
Upstream geneRhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9
Downstream gene2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281N10.bB6Ng01-281N10.g
ACCGA081210GA081211
length1,1921,146
definitionB6Ng01-281N10.b B6Ng01-281N10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagaatgttacctattcagtaacattcaaatttacttctag
tagaggtggtgaaactaattaggcattacaaagaacagagctagctattg
ctcactgctggtctgcagagtgattacttaggacagtagccagtctcacc
caaacaagggaatacacaatggcctagcgaataggtgggtttaccatgag
atagagctagggaatcccactgagacagagatcttctctacagccaggta
tatcaggctacattgcatattagaagcaagttggtgaattcttctgacaa
atggagattctccacagatacttaaaagaatatccaagttacactcatac
aagaatttatcagggcctaggaaataggggggatgtggtattgcattatt
catgaggtctgctagagcagaaccccctggtgctagctttcacaaggctc
aaaggagtagcacaaattgtgactagggtgtgaaatccttacctgtcatt
agctgactctatgcagggctgttttatctttactgtaaatattacctggt
tcctgtaagtccttttgaagtcattcctttgttttgtgtcaggtaacttc
aatgtactttgcctgctgtgacttcctacccctctgtattatataagact
ggtgttcactttgtgactatacattcacattctacacaacctcttgtgtt
gattttgtctgtcattcgcagactccttgtccacctgcaactagagaccc
attctacgcagacagggaccaaaaagggtttgcagcaaaggctttactgg
gaaacttacaccatagtggggagtcagaagtggaggcccctggtttatct
ttcaaaaacagccctcttatggttcgcctggtggtctcagtaaaggtaga
ccatactgttcagctgtggtctctctcagtccctccccacccccagccca
aattagattctcatttggaagtgtgtgtgtttccagacaaatgtgtataa
catgttatatacaggattgtgtattgaaagtgtggtggaaggccagagtt
caacacttgggtgtccttctttgacctatgctccacattgtctgaattaa
ctgtttgactaagccttaactgggcatccagcctagacctcaatcgtacc
tttcaatggcagaagaaatccaagtgttctgtacgtgcctgc
gaattctgagaggggctcagtatcctctctgaggcagcaccccaccccca
cggcacagtccctatggcaaagcctgggagtctgctgggctgtctttacc
tcccagctgagctccatccctcctgggccttgttttcgtgccctgagatt
gctaatgccagactctactccagaggggagacacatggctgtcagtgcaa
ggtctcccttctagacccttatttataagatttttgtttttccaaactaa
aagttttcctgagctaaatcaaacccagacacatgtggcttgttgtattt
ttattatcattgtgctgaaaggaacgtgtagagatttattggcatgcaca
tgtgactcgggatgatctatacgattgcacggagtaaactcacttagaag
gaagctagggcaccacgtgtccatgaaattatggaaaatgaaatgttgca
tttttgagaaaaagcctttcaccaagacaaatgagatcatgtcctagaaa
atgctgtaccagggctagaaggaggtccaggctcttcctgccactctgtg
tgatgctgtgaaagggcccaaaggtccctcaccaagggtatagagttggc
accaccctccaacagaaagagaaaagcacaggacatttatctcttggtct
gtcctgcttcctctcctcatagcttaactatctagacaagaatgtagcta
gacaaaaactaaccagggttttatgtcgtttctctgcaagtctggtaatt
cttgagacagataggaacatcactggagactaataaccagctagctgctc
aaagcttgaaagacaggattcaggaggggagagttgtggggaatggagac
agcattcacagaccagcatcctaggaaggtggatggactgtgatctcaga
gctctatgttgtggagagcgggcttctaagatgcactctcctcaccccac
tttagctgggacattgcagctgcttgacttctggatctatttctcgattg
ctgaatcaacatatgcttctctctctcttctctctcttctctctcattaa
ttacaggttctagaagagaattgtctcaagtggcttaaaagcactggatg
ctctaagaagaccaggtcagttcggtatccaatggacattctcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_127148461_127149620
seq2: B6Ng01-281N10.g_67_1212

seq1  GAATTCTGAGAGGGGCTCAGTATCCTCTCTGAGGCAGCACCCCACCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAGGGGCTCAGTATCCTCTCTGAGGCAGCACCCCACCCCCA  50

seq1  CGGCACAGTCCCTATGGCAAAGCCTGGGAGTCTGCTGGGCTGTCTTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACAGTCCCTATGGCAAAGCCTGGGAGTCTGCTGGGCTGTCTTTACC  100

seq1  TCCCAGCTGAGCTCCATCCCTCCTGGGCCTTGTTTTCGTGCCCTGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTGAGCTCCATCCCTCCTGGGCCTTGTTTTCGTGCCCTGAGATT  150

seq1  GCTAATGCCAGACTCTACTCCAGAGGGGAGACACATGGCTGTCAGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCCAGACTCTACTCCAGAGGGGAGACACATGGCTGTCAGTGCAA  200

seq1  GGTCTCCCTTCTAGACCCTTATTTATAAGATTTTTGTTTTTCCAAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCTTCTAGACCCTTATTTATAAGATTTTTGTTTTTCCAAACTAA  250

seq1  AAGTTTTCCTGAGCTAAATCAAACCCAGACACATGTGGCTTGTTGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCCTGAGCTAAATCAAACCCAGACACATGTGGCTTGTTGTATTT  300

seq1  TTATTATCATTGTGCTGAAAGGAACGTGTAGAGATTTATTGGCATGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCATTGTGCTGAAAGGAACGTGTAGAGATTTATTGGCATGCACA  350

seq1  TGTGACTCGGGATGATCTATACGATTGCACGGAGTAAACTCACTTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCGGGATGATCTATACGATTGCACGGAGTAAACTCACTTAGAAG  400

seq1  GAAGCTAGGGCACCACGTGTCCATGAAATTATGGAAAATGAAATGTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGGGCACCACGTGTCCATGAAATTATGGAAAATGAAATGTTGCA  450

seq1  TTTTTGAGAAAAAGCCTTTCACCAAGACAAATGAGATCATGTCCTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGAAAAAGCCTTTCACCAAGACAAATGAGATCATGTCCTAGAAA  500

seq1  ATGCTGTACCAGGGCTAGAAGGAGGTCCAGGCTCTTCCTGCCACTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTACCAGGGCTAGAAGGAGGTCCAGGCTCTTCCTGCCACTCTGTG  550

seq1  TGATGCTGTGAAAGGGCCCAAAGGTCCCTCACCAAGGGTATAGAGTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGTGAAAGGGCCCAAAGGTCCCTCACCAAGGGTATAGAGTTGGC  600

seq1  ACCACCCTCCAACAGAAAGAGAAAAGCACAGGACATTTATCTCTTGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTCCAACAGAAAGAGAAAAGCACAGGACATTTATCTCTTGGTCT  650

seq1  GTCCTGCTTCCTCTCCTCATAGCTTAACTATCTAGACAAGAATGTAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTCCTCTCCTCATAGCTTAACTATCTAGACAAGAATGTAGCTA  700

seq1  GACAAAAACTAACCAGGGTTTTATGTCGTTTCTCTGCAAGTCTGGTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACTAACCAGGGTTTTATGTCGTTTCTCTGCAAGTCTGGTAATT  750

seq1  CTTGAGACAGATAGGAACATCACTGGAGACTAATAACCAGCTAGCTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACAGATAGGAACATCACTGGAGACTAATAACCAGCTAGCTGCTC  800

seq1  AAAGCTTGAAAGACAGGATTCAGGAGGGGAGAGTTGTGGGGAATGGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGAAAGACAGGATTCAGGAGGGGAGAGTTGTGGGGAATGGAGAC  850

seq1  AGCATTCACAGACCAGCATCCTAGGAAGGTGGATGGACTGTTGATCTCAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCATTCACAGACCAGCATCCTAGGAAGGTGGATGGACTG-TGATCTCAG  899

seq1  AGCTCTATGTTGTGGAGAGCGGGCTTCTAAAGATGCACCTCTCCTCACCC  950
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  AGCTCTATGTTGTGGAGAGCGGGCTTCT-AAGATGCA-CTCTCCTCACCC  947

seq1  CACTTTAGCTGGGACATTGCAGCTGGCTTTGACTTCTTGGATCTATTTCC  1000
      |||||||||||||||||||||||||   |||||||| ||||||||||| |
seq2  CACTTTAGCTGGGACATTGCAGCTG--CTTGACTTC-TGGATCTATTT-C  993

seq1  TCGATTTGCTGAAATCCAACATATTGCTTCTCTCTCTCTCTCTCTCTCTC  1050
      |||| ||||||||   ||||||| ||||||||||||||| ||||||||| 
seq2  TCGA-TTGCTGAA--TCAACATA-TGCTTCTCTCTCTCT-TCTCTCTCT-  1037

seq1  TCTCTCTCCATTTATTTACA-GTTCTAG-AGAGA--TGTCTC-AGTGG-T  1094
      ||||||||   ||| ||||| ||||||| |||||  |||||| ||||| |
seq2  TCTCTCTC--ATTAATTACAGGTTCTAGAAGAGAATTGTCTCAAGTGGCT  1085

seq1  TAAGAGCACTTGTTGCTCTTATAGAGGACCAGGGTTCAGTTCCCAGTATC  1144
      ||| |||||| | ||||||   ||| |||||||  ||||||  | |||||
seq2  TAAAAGCACTGGATGCTCT--AAGAAGACCAGG--TCAGTT--CGGTATC  1129

seq1  CACATGACA-TCTCACA  1160
      ||   |||| |||||||
seq2  CAATGGACATTCTCACA  1146