This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-283I02
Chromosome
8 (Build37)
Map Location
92,334,330 - 92,406,388
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Sall1
,
LOC100041089
,
EG625801
,
EG384862
Downstream gene
Tox3
,
LOC100041133
,
Chd9
Link
Open Mouse BAC browser
Click to get alignment info.
name
Sall1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:58198
MGI:1889585
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100041089
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041089
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
EG625801
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:625801
MGI:3647663
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 149 ESTs, 4 Proteins
pseudo
: _no_value
name
EG384862
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:384862
MGI:3643649
definition
note
: predicted gene, EG384862
pseudo
: _no_value
name
Tox3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:244579
MGI:3039593
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100041133
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100041133
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
Chd9
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:109151
MGI:1924001
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Sall1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:45598370
GeneID:58198
MGI:1889585
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sal-like 1 (Drosophila)
transcript_id
: NM_021390.2
name
LOC100041089
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149258989
GeneID:100041089
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: hypothetical protein LOC100041089
transcript_id
: XM_001476646.1
name
Tox3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142343779
GeneID:244579
MGI:3039593
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: TOX high mobility group box family member 3
transcript_id
: NM_172913.2
name
LOC100041133
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149258992
GeneID:100041133
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: hypothetical protein LOC100041133
transcript_id
: XM_001476681.1
name
Chd9
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:77404416
GeneID:109151
MGI:1924001
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: chromodomain helicase DNA binding protein 9
transcript_id
: NM_177224.1
name
Sall1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:11496251
GeneID:58198
MGI:1889585
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0031129 - inductive cell-cell signaling [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0001657 - ureteric bud development [Evidence IMP]
codon_start
: 1
exception
: unclassified translation discrepancy
function
: zinc finger transcription factor
product
: sal-like 1
protein_id
: NP_067365.1
name
LOC100041089
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149258990
GeneID:100041089
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001476696.1
name
Tox3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370402
CCDS:CCDS22516.1
GeneID:244579
MGI:3039593
definition
GO_component
: GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]
GO_process
: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: trinucleotide repeat containing 9
protein_id
: NP_766501.1
name
LOC100041133
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149258993
GeneID:100041133
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001476731.1
name
EG625801
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149258977
GeneID:625801
MGI:3647663
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 149 ESTs, 4 Proteins
product
: predicted gene, EG625801
pseudo
: _no_value
transcript_id
: XR_031896.1
clone name
MSMg01-333C03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-150N15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-518B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125H07
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-538G22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461H08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080L10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-067F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-069E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-531L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-370L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-087I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268D24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-342K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-464M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-299K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-427D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-366G07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-169D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-190M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178E19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-079E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-038N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-335K22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-022F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-169C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-185A06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-125J24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-237A10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-107G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-146N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-279F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-012B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-198F17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-172M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-095G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-042C22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-180M22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-327O09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126J13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-032D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143G09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-178F03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-229H02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-094J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315O07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-298B14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-155M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-061I24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-068H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021E10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-059H17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-258K02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-317N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-277N20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054B03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242O17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-153C06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-320P12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265K04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-059E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-014D21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-254E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046C11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-185P22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321B18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-143G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-334E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-136H08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-032C02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-177L23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-086L01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-087O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-073L23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-345D20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-271I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-113M02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192J23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-233A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281J06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-156O04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235G14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-277B24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-283I02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-048E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-139J18
singlet/doublet
doublet
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clone name
B6Ng01-034M15
singlet/doublet
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clone name
B6Ng01-032P18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228F04
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clone name
B6Ng01-240L13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-231O21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-236E07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078B12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-208H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-041L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008O01
singlet/doublet
doublet
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unique
clone name
B6Ng01-044M17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-218D21
singlet/doublet
doublet
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unique
clone name
B6Ng01-135I17
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unique
clone name
B6Ng01-146I10
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unique
clone name
B6Ng01-138I20
singlet/doublet
doublet
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unique
clone name
B6Ng01-246C07
singlet/doublet
doublet
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unique
clone name
B6Ng01-307H23
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doublet
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clone name
B6Ng01-240K20
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doublet
plural/unique
unique
clone name
B6Ng01-273A18
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singlet
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unique
clone name
B6Ng01-268D09
singlet/doublet
doublet
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clone name
B6Ng01-201O19
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doublet
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clone name
B6Ng01-262I14
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clone name
B6Ng01-175D23
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B6Ng01-337K03
singlet/doublet
doublet
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unique
clone name
B6Ng01-028O21
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clone name
B6Ng01-283P04
singlet/doublet
doublet
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clone name
B6Ng01-086E24
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B6Ng01-202B06
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doublet
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clone name
B6Ng01-223P04
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doublet
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B6Ng01-016H08
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B6Ng01-120D21
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B6Ng01-295D15
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B6Ng01-340A24
singlet/doublet
doublet
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unique
clone name
B6Ng01-243F04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-042E05
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B6Ng01-137C16
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B6Ng01-205C22
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B6Ng01-105K18
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doublet
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clone name
B6Ng01-138A03
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B6Ng01-116D01
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clone name
B6Ng01-173L23
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B6Ng01-180P06
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B6Ng01-138N24
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B6Ng01-239P08
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doublet
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clone name
B6Ng01-150O14
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B6Ng01-159B22
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clone name
B6Ng01-213D07
singlet/doublet
doublet
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