BAC Information

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BAC

Clone NameB6Ng01-283I02
Chromosome8 (Build37)
Map Location 92,334,330 - 92,406,388
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283I02.bB6Ng01-283I02.g
ACCGA082449GA082450
length1,1531,158
definitionB6Ng01-283I02.b B6Ng01-283I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,334,330 - 92,335,818)(92,405,240 - 92,406,388)
sequence
gaattctcaggtcttaggaaagataaggtaaaaactgaagtatcctggga
gagagactgccctgttctctgaggatgaggaaggagcatcaagtgggagg
tgttactgtgctgatcggcttactaagaggctcagttatcagccatggca
ttgcaaggaagaaaattgtgtaaaggattgctaggaggaagtagacctaa
cacagactatactggttacttttcattgctgtgaccaaaatatatgacat
caacaactaaagagaggagggctcatggtttaaaagggtccagaaaagga
caagtagggacaggaaatagactctaaagacccaccctcctctctaagtt
agttcttccaggctggcccaatttcctaaagctttcaaacctcttagagt
agtaccaacaattattcaacatatgaaaacagggggttcgttagtttcaa
accatgacacagatccaaaaagagaccctgaaccaaactcagctttgagc
tttggggtgccagagaataggtatttccaagatgccctagaaaactgagg
catttccccacatttcttgacccattctaggcgaagcttaggcgcctctg
aggagcagaaactgggacactcagcactgtgtcctctaacgcacagtaca
gagtatctgaccaatatgcataagacaagtgtttatgtattgaaggaatt
cacaaatgtgccagagattgggaagttgggcggtggaatctctgagtact
actaggcaatgaaaacggagaatgtgtgtctagagcctgtatctggatta
ctcatagtgtactaggctgcccacaatgaaccatgctgtgttttgcttca
ctgtttctactgttcctgcagccacccactgtagccacccaccgcatggc
cctccaaacactcagtgttcagaatcagagaccaaaagagatgtcaggct
tagggacaaggggcacaggatgaggtgaaagttaatacctcccagcctca
ggccatagcttttcttctctgtcctattgctgcagggagattcactctac
tggagttccaggtgtcaaatcacttacactgagtctactgagtccacatg
aaggtcaatcaagcgggcctttttgagacgaacatcagatgagggagttt
ggg

gaattcaaagcacgagcacacagagacctggaaaaggaagctggaataag
ctagctaggtcagatacaaaaccagatcttaccatgggaaaaaaatccca
caaactctaacagaaaaggatgctttccaagatgcctcactagctttggg
acagagcagagaattcttcagttaccattctcttatggccacacacattt
tgaaaacgatttccaccctatggatcttcctgacgttatcaactatattt
tgttcccattcactatagagaagcccttcctttcaaagacagttttcatc
ctttctttactgtaatgagaaagaagactcggcagtttacaaaagccatt
ggcaggtgggccgatgttcctaaataagaaggttcaaaacaactcttttc
agggtttcactgttttcagtccaagctgccatatcagggtattgcttcat
ctcaaggtattgtttcctgagtggttttaattctataatgagcaatattg
atggtttgggaaagtggtgtggacacctcagctctccctagggacctatt
cttaagaagtcatcacttctcaattttcttccctgaacactctttgattg
tcaactggagagcctgtgataaagaatatcttccccagcatccttttgga
tatgaagccgatggatgtgggaaaacagcatcatgagatcttgggttcaa
gatgagattccaagttagttggtatgagttaagacttaagcacaaataga
atagtcactgaaccttgccaactgagacaaagcaagagacatttgtttta
tgttcccatgaggtaagaagaaagacaataaagagctgagtggagacatg
gtgggggagaagagcttgattattaccagagaaagagtcaggataaatgt
tcacagggagagggctccaaggatgtgagagaaccagtggtcaatcctgg
ccatcactgtggcattgaaccttcatctccttgcatccccatgccccatg
ctttcagtgaagttagtttcacaacacacacacatgacaacattcatcag
tacacacacatacacaacttgtctaagaacaaattacatggtcattgttg
tagttctatgaaaagccaggctggaattctaatatcctaaagtttccaag
tgaacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92334330_92335818
seq2: B6Ng01-283I02.b_46_1198

seq1  GAATTCTCAGGTCTTAGGAAAGATAAGGTAAAAACTGAAGTATCCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTCTTAGGAAAGATAAGGTAAAAACTGAAGTATCCTGGGA  50

seq1  GAGAGACTGCCCTGTTCTCTGAGGATGAGGAAGGAGCATCAAGTGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTGCCCTGTTCTCTGAGGATGAGGAAGGAGCATCAAGTGGGAGG  100

seq1  TGTTACTGTGCTGATCGGCTTACTAAGAGGCTCAGTTATCAGCCATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTGCTGATCGGCTTACTAAGAGGCTCAGTTATCAGCCATGGCA  150

seq1  TTGCAAGGAAGAAAATTGTGTAAAGGATTGCTAGGAGGAAGTAGACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGAAGAAAATTGTGTAAAGGATTGCTAGGAGGAAGTAGACCTAA  200

seq1  CACAGACTATACTGGTTACTTTTCATTGCTGTGACCAAAATATATGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTATACTGGTTACTTTTCATTGCTGTGACCAAAATATATGACAT  250

seq1  CAACAACTAAAGAGAGGAGGGCTCATGGTTTAAAAGGGTCCAGAAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACTAAAGAGAGGAGGGCTCATGGTTTAAAAGGGTCCAGAAAAGGA  300

seq1  CAAGTAGGGACAGGAAATAGACTCTAAAGACCCACCCTCCTCTCTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGGACAGGAAATAGACTCTAAAGACCCACCCTCCTCTCTAAGTT  350

seq1  AGTTCTTCCAGGCTGGCCCAATTTCCTAAAGCTTTCAAACCTCTTAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCAGGCTGGCCCAATTTCCTAAAGCTTTCAAACCTCTTAGAGT  400

seq1  AGTACCAACAATTATTCAACATATGAAAACAGGGGGTTCGTTAGTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAACAATTATTCAACATATGAAAACAGGGGGTTCGTTAGTTTCAA  450

seq1  ACCATGACACAGATCCAAAAAGAGACCCTGAACCAAACTCAGCTTTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACACAGATCCAAAAAGAGACCCTGAACCAAACTCAGCTTTGAGC  500

seq1  TTTGGGGTGCCAGAGAATAGGTATTTCCAAGATGCCCTAGAAAACTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTGCCAGAGAATAGGTATTTCCAAGATGCCCTAGAAAACTGAGG  550

seq1  CATTTCCCCACATTTCTTGACCCATTCTAGGCGAAGCTTAGGCGCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCCACATTTCTTGACCCATTCTAGGCGAAGCTTAGGCGCCTCTG  600

seq1  AGGAGCAGAAACTGGGACACTCAGCACTGTGTCCTCTAACGCACAGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGAAACTGGGACACTCAGCACTGTGTCCTCTAACGCACAGTACA  650

seq1  GAGTATCTGACCAATATGCATAAGACAAGTGTTTATGTATTGAAGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTGACCAATATGCATAAGACAAGTGTTTATGTATTGAAGGAATT  700

seq1  CACAAATGTGCCAGAGATTGGGAAGTTGGGCGGTGGAATCTCTGAGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTGCCAGAGATTGGGAAGTTGGGCGGTGGAATCTCTGAGTACT  750

seq1  ACTAGGCAATGAAAACGGAGAATGTGTGTCTAGAGCCTGTATCTGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAATGAAAACGGAGAATGTGTGTCTAGAGCCTGTATCTGGATTA  800

seq1  CTCATAGTGTACTAGGCTGCCCACAATGAACCATGCTGTGTTTTGCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTGTACTAGGCTGCCCACAATGAACCATGCTGTGTTTTGCTTCA  850

seq1  CTGTTTCTACTGTTCCTGCAGCCACCCACTGTAGCCACCCACCGCATGG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGTTTCTACTGTTCCTGCAGCCACCCACTGTAGCCACCCACCGCATGGC  900

seq1  CCTCCAAACACTCAGGTGTTCAGAATCAGAGACCAAAAGAGATGTCAGGC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACACTCA-GTGTTCAGAATCAGAGACCAAAAGAGATGTCAGGC  949

seq1  TTAGGGACAAGGGGCACAGGATGAGGTGAAAGTTAATACCTCCCAGCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACAAGGGGCACAGGATGAGGTGAAAGTTAATACCTCCCAGCCTC  999

seq1  AAGCCATAGC-TTTCTTCTCTGTCCCTATTGCTGCAGGGAGAATTCAACT  1048
      | |||||||| |||||||||||| ||||||||||||||||| |||| |||
seq2  AGGCCATAGCTTTTCTTCTCTGT-CCTATTGCTGCAGGGAG-ATTC-ACT  1046

seq1  CTACTGGAGTTCCAGGTGTCAAATCACCTTACACTGAAGTCTACTGAAGT  1098
      |||||||||||||||||||||||||| ||||||||| ||||||||| |||
seq2  CTACTGGAGTTCCAGGTGTCAAATCA-CTTACACTG-AGTCTACTG-AGT  1093

seq1  CAACATGGAAAGTCAATCAAAGCGGGCCTTTTTGAGGACAGAACATCAAG  1148
      | |||| ||| ||||||| |||||||||||||||| ||| ||||||| ||
seq2  CCACAT-GAAGGTCAATC-AAGCGGGCCTTTTTGA-GAC-GAACATC-AG  1138

seq1  ATGA-GGAGTTT-TGAGACAGGCTTCTAGCCTCCTGAGAGGCCATCTTCC  1196
      |||| |||||||  |                                   
seq2  ATGAGGGAGTTTGGG-----------------------------------  1153

seq1  AGATGTGTCCCCAGATGCCCTGGGATGCACTTCCTCCCCACCATTCCCAT  1246
                                                        
seq2  --------------------------------------------------  1153

seq1  CAGGCTTTGGTTCAGTAAATTCCCGTTTGTGTGGAAGTACGCTTGGCTGC  1296
                                                        
seq2  --------------------------------------------------  1153

seq1  CACAGACACACCTCTTCTTGTTCATCTGGGTAATTACACAGTGCCTCTTG  1346
                                                        
seq2  --------------------------------------------------  1153

seq1  TGAGCTAGATCTTTTCTCCTTGAGGGAAAGAACAGTCTCAGCCTCAAAGG  1396
                                                        
seq2  --------------------------------------------------  1153

seq1  TATTTCCTCCCACACTGTGTCCACATGATCTGCCATTTAGAAGCATTTGA  1446
                                                        
seq2  --------------------------------------------------  1153

seq1  ACAAATCATTTTATCCATCCCCCTCCTTTTCAGGGAGTTTGGG  1489
                                                 
seq2  -------------------------------------------  1153


seq1: chr8_92405240_92406388
seq2: B6Ng01-283I02.g_67_1224 (reverse)

seq1  TATGTTCACCTTGTGACCTTTAG--TATTAGAATTCCAGGCT-GCTTTTC  47
      |||||||| ||||  | ||||||  |||||||||||||| || |||||||
seq2  TATGTTCA-CTTGGAAACTTTAGGATATTAGAATTCCAGCCTGGCTTTTC  49

seq1  ATAG-ACTACA--CATGAACATGT-ATTTG-TCTTAGACAGGTGTGTGTG  92
      |||| ||||||   |||| ||||| ||||| ||||||||| || ||||| 
seq2  ATAGAACTACAACAATGACCATGTAATTTGTTCTTAGACAAGT-TGTGTA  98

seq1  TGTGTGTGTGTGTGTGTGTGTGTGT-GTGTGTGTGTGTGTGTGAGACTAA  141
      |||||||||     ||  ||| |||  ||||||||||| ||||| |||||
seq2  TGTGTGTGTACTGATGAATGT-TGTCATGTGTGTGTGT-TGTGAAACTAA  146

seq1  CTTCACTGAAAGCATGGGGCATGGGGATGCAAGGAGATG-AGGTTC-ATG  189
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CTTCACTGAAAGCATGGGGCATGGGGATGCAAGGAGATGAAGGTTCAATG  196

seq1  CCACAGTGATGG-CAGGATTGACCACTGGTTCTCTCACATCCTTGGAGCC  238
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGATGGCCAGGATTGACCACTGGTTCTCTCACATCCTTGGAGCC  246

seq1  CTCTCCCTGTGAACATTTATCCTGACTCTTTCTCTGGT-ATAATCAAGCT  287
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTCCCTGTGAACATTTATCCTGACTCTTTCTCTGGTAATAATCAAGCT  296

seq1  CTTCTCCCCCACCATGTCTCCACTCAGCTCTTTATTGTCTTTCTTCTTAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCCACCATGTCTCCACTCAGCTCTTTATTGTCTTTCTTCTTAC  346

seq1  CTCATGGGAACATAAAACAAATGTCTCTTGCTTTGTCTCAGTTGGCAAGG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGGAACATAAAACAAATGTCTCTTGCTTTGTCTCAGTTGGCAAGG  396

seq1  TTCAGTGACTATTCTATTTGTGCTTAAGTCTTAACTCATACCAACTAACT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACTATTCTATTTGTGCTTAAGTCTTAACTCATACCAACTAACT  446

seq1  TGGAATCTCATCTTGAACCCAAGATCTCATGATGCTGTTTTCCCACATCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTCATCTTGAACCCAAGATCTCATGATGCTGTTTTCCCACATCC  496

seq1  ATCGGCTTCATATCCAAAAGGATGCTGGGGAAGATATTCTTTATCACAGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTTCATATCCAAAAGGATGCTGGGGAAGATATTCTTTATCACAGG  546

seq1  CTCTCCAGTTGACAATCAAAGAGTGTTCAGGGAAGAAAATTGAGAAGTGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGTTGACAATCAAAGAGTGTTCAGGGAAGAAAATTGAGAAGTGA  596

seq1  TGACTTCTTAAGAATAGGTCCCTAGGGAGAGCTGAGGTGTCCACACCACT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTTAAGAATAGGTCCCTAGGGAGAGCTGAGGTGTCCACACCACT  646

seq1  TTCCCAAACCATCAATATTGCTCATTATAGAATTAAAACCACTCAGGAAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACCATCAATATTGCTCATTATAGAATTAAAACCACTCAGGAAA  696

seq1  CAATACCTTGAGATGAAGCAATACCCTGATATGGCAGCTTGGACTGAAAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTTGAGATGAAGCAATACCCTGATATGGCAGCTTGGACTGAAAA  746

seq1  CAGTGAAACCCTGAAAAGAGTTGTTTTGAACCTTCTTATTTAGGAACATC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACCCTGAAAAGAGTTGTTTTGAACCTTCTTATTTAGGAACATC  796

seq1  GGCCCACCTGCCAATGGCTTTTGTAAACTGCCGAGTCTTCTTTCTCATTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACCTGCCAATGGCTTTTGTAAACTGCCGAGTCTTCTTTCTCATTA  846

seq1  CAGTAAAGAAAGGATGAAAACTGTCTTTGAAAGGAAGGGCTTCTCTATAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGAAAGGATGAAAACTGTCTTTGAAAGGAAGGGCTTCTCTATAG  896

seq1  TGAATGGGAACAAAATATAGTTGATAACGTCAGGAAGATCCATAGGGTGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGAACAAAATATAGTTGATAACGTCAGGAAGATCCATAGGGTGG  946

seq1  AAATCGTTTTCAAAATGTGTGTGGCCATAAGAGAATGGTAACTGAAGAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTTTTCAAAATGTGTGTGGCCATAAGAGAATGGTAACTGAAGAAT  996

seq1  TCTCTGCTCTGTCCCAAAGCTAGTGAGGCATCTTGGAAAGCATCCTTTTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCTGTCCCAAAGCTAGTGAGGCATCTTGGAAAGCATCCTTTTC  1046

seq1  TGTTAGAGTTTGTGGGATTTTTTTCCCATGGTAAGATCTGGTTTTGTATC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGTTTGTGGGATTTTTTTCCCATGGTAAGATCTGGTTTTGTATC  1096

seq1  TGACCTAGCTAGCTTATTCCAGCTTCCTTTTCCAGGTCTCTGTGTGCTCG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGCTAGCTTATTCCAGCTTCCTTTTCCAGGTCTCTGTGTGCTCG  1146

seq1  TGCTTTGAATTC  1149
      ||||||||||||
seq2  TGCTTTGAATTC  1158


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