BAC Information

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BAC

Clone NameB6Ng01-288C04
Chromosome8 (Build37)
Map Location 65,329,469 - 65,499,319
singlet/doubletdoublet
Overlap geneSpock3
Upstream genePalld, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288C04.bB6Ng01-288C04.g
ACCGA085879GA085880
length8811,116
definitionB6Ng01-288C04.b B6Ng01-288C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,329,469 - 65,329,991)(65,498,199 - 65,499,319)
sequence
gaattccttatgtgctgtaaaaatgccaatgtactcagagcagcctgcta
tctcagggagaccaccgttcttctgctgcttcttcccccatctatataag
actcaaaactgctgaatcacacaggctcagcttcccttccttcacatata
tttcctgtactctgagccaagctaccctgagcaacctgctagcttagaga
ggcctccattctcctgactcttgtccattcatcttcatcaaacttgaggc
tcctgaactatgcagaatagcaggaaacatacagtccaagaatatatatc
agaggcctgccacaccaggaccatgaaggttcacatgcctgctaatatca
actacaacaagaacatccaggtactaaaggcccttaaaagaacatgatca
acaaaagacacaacatatgacacccaaagtgtagcaactccattacagca
agcctgcaatatcctgacatataggaaaaataagaaaataaggataaatc
caatcataaaaggataatagagcccttaaagaagaaataaataaatccct
taaatataggaaaatactatcaatcagatagaggtctttaaagaagaaac
aaacaaatgctttaaagatgtacaatttaacaggtgaaagaaataaacta
tgcaagacctgaaagtggaaataaaagcattaaagacaacacaaactgag
gaaattttggagatggaaaacctagagaagagaacagggaaaagagatgt
agcaccaacaggatatagaagatgtaagagagaatctcagcataggagat
acaaaagaaggcattgatataccaatcaaagaatagggctaaagctaaaa
aattcctgggacaaaaacatccagaaatctg
gaattccctgtgtgctgctcatgctccatgtgtcctgctgccctgcagcc
attttggacatcctgtggtattctctcctggatacctctctaatctcaga
tcatatgcccacactagcatccacatagacatttaagcctatgtcttgac
ccacataagcattaaaacctagcatctttatacaaaagtaaacacgtagt
atgtgttgttctctgtgtgggttacttcacttaatgtagtatttctatga
gtttgtaaatatccctgcctgtctgaaataatctcatatattcaatgttg
ttttagttatatttatattggagcacattgaatatattaagccatgaata
cgttaagtcactttgctgtctttccttaaggtaatcccttttgatatctc
aatattttctgtagatttcttcattaaaaacaaaaatgttgtgttactaa
aataattaaaaagaattaagtcaagtatgttctattaactgtatctatgc
atctatctatatttatatagatataaatatctatatctatattgatataa
atataaatagaaagatgcatatatatatatatatatatatatatatagtt
cacaaatagtcacagtattgaaatttaatgtttttaaatatacaactggg
tgagtggatatttcagtaaatattcttgctgttgagaactgtttgaattt
tattatgcttcctttaacacctatcgttatcaattattaaatatgagata
aggtttgaaagcaaagtctctttctgcacctgctgtgttatcccacacaa
tttttctgatgtcaacccctaacttctgattaagacacttctttaaattt
gccttaaatcatcaaattagagagcactgaattttctactaccatgaaga
tgaaactaccaaatacaaataattaaatctcaatgtataggaattcaggt
caagaatatgaaacactattttctatagggatagtttagttaaataaatc
tatacagaggatcatttttatttgcttttaacattttagtggagaaatat
atagagtgatattgttcacctatcctgtaatttaatagaatatattaact
gaccaaaaaatagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65329469_65329991
seq2: B6Ng01-288C04.b_51_573

seq1  GAATTCCTTATGTGCTGTAAAAATGCCAATGTACTCAGAGCAGCCTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATGTGCTGTAAAAATGCCAATGTACTCAGAGCAGCCTGCTA  50

seq1  TCTCAGGGAGACCACCGTTCTTCTGCTGCTTCTTCCCCCATCTATATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGAGACCACCGTTCTTCTGCTGCTTCTTCCCCCATCTATATAAG  100

seq1  ACTCAAAACTGCTGAATCACACAGGCTCAGCTTCCCTTCCTTCACATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAACTGCTGAATCACACAGGCTCAGCTTCCCTTCCTTCACATATA  150

seq1  TTTCCTGTACTCTGAGCCAAGCTACCCTGAGCAACCTGCTAGCTTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTACTCTGAGCCAAGCTACCCTGAGCAACCTGCTAGCTTAGAGA  200

seq1  GGCCTCCATTCTCCTGACTCTTGTCCATTCATCTTCATCAAACTTGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCATTCTCCTGACTCTTGTCCATTCATCTTCATCAAACTTGAGGC  250

seq1  TCCTGAACTATGCAGAATAGCAGGAAACATACAGTCCAAGAATATATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACTATGCAGAATAGCAGGAAACATACAGTCCAAGAATATATATC  300

seq1  AGAGGCCTGCCACACCAGGACCATGAAGGTTCACATGCCTGCTAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTGCCACACCAGGACCATGAAGGTTCACATGCCTGCTAATATCA  350

seq1  ACTACAACAAGAACATCCAGGTACTAAAGGCCCTTAAAAGAACATGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACAAGAACATCCAGGTACTAAAGGCCCTTAAAAGAACATGATCA  400

seq1  ACAAAAGACACAACATATGACACCCAAAGTGTAGCAACTCCATTACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGACACAACATATGACACCCAAAGTGTAGCAACTCCATTACAGCA  450

seq1  AGCCTGCAATATCCTGACATATAGGAAAAATAAGAAAATAAGGATAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAATATCCTGACATATAGGAAAAATAAGAAAATAAGGATAAATC  500

seq1  CAATCATAAAAGGATAATAGAGC  523
      |||||||||||||||||||||||
seq2  CAATCATAAAAGGATAATAGAGC  523

seq1: chr8_65498199_65499319
seq2: B6Ng01-288C04.g_66_1181 (reverse)

seq1  AGTCTA-TTTTTGGTCAGTTAAATATATTCTATTAAATTACAGGATAGTG  49
      |||||| ||||||||||||| |||||||||||||||||||||||||||  
seq2  AGTCTATTTTTTGGTCAGTT-AATATATTCTATTAAATTACAGGATAGGT  49

seq1  AAACAAATATCACTCTATAATATTTCCTCACTAAAATGTTAAAAGCAAAT  99
       ||| ||||||||||||| |||||||  ||||||||||||||||||||||
seq2  GAAC-AATATCACTCTAT-ATATTTCTCCACTAAAATGTTAAAAGCAAAT  97

seq1  -AAAATGATCTTCTGTTATTAGATTTAATTTAACTAAACTATCCCTATTA  148
       ||||||||| |||||   ||||||| |||||||||||||||||||| ||
seq2  AAAAATGATCCTCTGT--ATAGATTT-ATTTAACTAAACTATCCCTA-TA  143

seq1  GAAAATAGTGTTTCATATTTCTTGACCTGAATTCCTATACATTGAGATTT  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAAATAGTGTTTCATA-TTCTTGACCTGAATTCCTATACATTGAGATTT  192

seq1  AATTATTTGTATTTGGTAGTTTCATCTTCATGGTAGTAGAAAATTCAGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGTATTTGGTAGTTTCATCTTCATGGTAGTAGAAAATTCAGTG  242

seq1  CTCTCTAATTTGATGATTTAAGGCAAATTTAAAGAAGTGTCTTAATCAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAATTTGATGATTTAAGGCAAATTTAAAGAAGTGTCTTAATCAGA  292

seq1  AGTTAGGGGTTGACATCAG-AAAATTGTGTGGGATAACACAGCAGGTGCA  347
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTTAGGGGTTGACATCAGAAAAATTGTGTGGGATAACACAGCAGGTGCA  342

seq1  GAAAGAGACTTTGCTTTCAAACCTTATCTCATATTTAATAATTGATAACG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGACTTTGCTTTCAAACCTTATCTCATATTTAATAATTGATAACG  392

seq1  ATAGGTGTTAAAGGAAGCATAATAAAATTCAAACAGTTCTCAACAGCAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTTAAAGGAAGCATAATAAAATTCAAACAGTTCTCAACAGCAAG  442

seq1  AATATTTACTGAAATATCCACTCACCCAGTTGTATATTTAAAAACATTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACTGAAATATCCACTCACCCAGTTGTATATTTAAAAACATTAA  492

seq1  ATTTCAATACTGTGACTATTTGTGAACTATATATATATATATATATATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATACTGTGACTATTTGTGAACTATATATATATATATATATATAT  542

seq1  ATATATGCATCTTTCTATTTATATTTATATCAATATAGATATAGATATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCATCTTTCTATTTATATTTATATCAATATAGATATAGATATTT  592

seq1  ATATCTATATAAATATAGATAGATGCATAGATACAGTTAATAGAACATAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATATAAATATAGATAGATGCATAGATACAGTTAATAGAACATAC  642

seq1  TTGACTTAATTCTTTTTAATTATTTTAGTAACACAACATTTTTGTTTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAATTCTTTTTAATTATTTTAGTAACACAACATTTTTGTTTTTA  692

seq1  ATGAAGAAATCTACAGAAAATATTGAGATATCAAAAGGGATTACCTTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAATCTACAGAAAATATTGAGATATCAAAAGGGATTACCTTAAG  742

seq1  GAAAGACAGCAAAGTGACTTAACGTATTCATGGCTTAATATATTCAATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGCAAAGTGACTTAACGTATTCATGGCTTAATATATTCAATGT  792

seq1  GCTCCAATATAAATATAACTAAAACAACATTGAATATATGAGATTATTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATATAAATATAACTAAAACAACATTGAATATATGAGATTATTTC  842

seq1  AGACAGGCAGGGATATTTACAAACTCATAGAAATACTACATTAAGTGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAGGGATATTTACAAACTCATAGAAATACTACATTAAGTGAAG  892

seq1  TAACCCACACAGAGAACAACACATACTACGTGTTTACTTTTGTATAAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACACAGAGAACAACACATACTACGTGTTTACTTTTGTATAAAGA  942

seq1  TGCTAGGTTTTAATGCTTATGTGGGTCAAGACATAGGCTTAAATGTCTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGTTTTAATGCTTATGTGGGTCAAGACATAGGCTTAAATGTCTAT  992

seq1  GTGGATGCTAGTGTGGGCATATGATCTGAGATTAGAGAGGTATCCAGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTAGTGTGGGCATATGATCTGAGATTAGAGAGGTATCCAGGAG  1042

seq1  AGAATACCACAGGATGTCCAAAATGGCTGCAGGGCAGCAGGACACATGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCACAGGATGTCCAAAATGGCTGCAGGGCAGCAGGACACATGGA  1092

seq1  GCATGAGCAGCACACAGGGAATTC  1121
      ||||||||||||||||||||||||
seq2  GCATGAGCAGCACACAGGGAATTC  1116