BAC Information

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BAC

Clone NameB6Ng01-288N11
Chromosome8 (Build37)
Map Location 131,045,498 - 131,171,166
singlet/doubletdoublet
Overlap geneLOC668494
Upstream genePard3, EG628847, Nrp1
Downstream geneItgb1, LOC100042659, LOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288N11.bB6Ng01-288N11.g
ACCGA086402GA086403
length1,1771,129
definitionB6Ng01-288N11.b B6Ng01-288N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,170,001 - 131,171,166)(131,045,498 - 131,046,613)
sequence
gaattctctggattcacataaaactgagctcttgctaaacaccatagtca
gggaaacagctatagaaatcacatggggaccacccatctcaggcccgggt
cctgttcctaaagtgctcttcctgtccttatttcctactaggtctgattt
ttcatgtggaagaatgtcaatcagttgcatctaggcttgtttccagggag
cacagagctcagacccactacatgcctcctaaacaaatatatgtatatac
agaataagtcaggttaaagtcaggcaaacacctcagacaccacatcatag
gtttgaaagaggaagaataaagtgagtcatgacaggccgaaacctcgact
ccatcagaaccccctccatgcctggtcctgagtttgaaatccagcatttg
tcttaatcaaatttagacatagtcatgcattcttacttcctagatgtcag
ttcttttcctagggctgggaaattggaagggattcctgaggacatgtatt
gggataaatgtcttctcctggaagcaggactgaacccatagagattgcct
caaggcctggttccatgcagctggcctgtactctgaaggaagtggtcagc
caggggtggaatgacgtcagggacagctgagtgtctgccaccaacgagct
taggagagtttagtatgagggtgtgagcttagctcaagaggaaagtgagc
aagtggtattggtgtttatccgccgaacactgcgtctcaatgtcttgtta
gcccctacctgttttctgagaactttcccactcagtagattacctgctag
cttaaatgctatagcagaaaaatcccatgcccagcttctcagcaaggaaa
gctccctcactaatctccgggtcactgtccaattgttatgggtacacagt
ctcctatgaagtgactctgggacctggaaattcttccaccttgggctttg
ccagcctttgggggtctgggaggctctccagtagatgatcttagaagggg
tatccatttcacttagaaatatctcattggaacctccaggatgaagcttc
attgtagtttgagtggcaaggcattgtgtctttctgagtgccaatgaaga
aagaacatacctggcttggaggaacagcttaagtaaggcacactgtgggt
tatcacatccaagtgagaagtccagga
gaattcactaacgccaacctctgaaggctgactgtgtctcttctgagggc
tgattatgtgaagccatgctcagaacttaagccaaccaagactggagatt
ttactccacagatattaagacccccagaaatcaggtttttactgttgcct
ctttccagagcctagttgtacaaaatgtaccagtgtaaccaccaaaaggg
tgagaactcttctttgccgtctttgacccgaaaaattagatttgtcagct
tgtttacataaaggatattggaagccacaggcagtgcagggtatctcact
aagagtcaggatcaaagtgtgggagtttggaagagagcagaaggatgttt
aagagagggcagggaactggggaaagtgttcaatgtgtaaagcgcttgct
ttgcaaacataaagacttgagttagatcccagaacctgtgtataaagctg
agtatggtggcactcacttgtaatactagaacctgggaggtgtcactggg
gattgccagccagccaacgtaacctaataagtgaactccacattcagagt
tacacacacacgcacacacacacacacacacacacacacacacacacaca
caaccaaggaagaggaacaatctatgttagacactggcgcagagcagagg
caacttggaaactgacccagagtaagcattacgcagtggaagaagagaaa
agtgggctgcagggagtcattgaaaaggaagttttcattaggaaagcaag
caatagccactcagaaggacagaggcagccatcattttgaagctatgggg
tgacactagaaggcagaatgtttatgggtcttggccatgtaccatcagaa
gcctttttaatttccaggagtatcacagcctgattaccagcaggtagatc
ttaaggagggacttgggagtcctgtttcctttggaaactgcaaagtgaag
ccaactgtgaaagccttgcaacaaaatcctcatcaccttgttttgggaag
ctgaaagctcttccccatgaacaaaagtggaaccaggaggctcaggtcct
caaggcaaagcattgcaacatccaatttctaacggaagcaattcaaaaca
ctttagtgttcatagtggttggatctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_131170001_131171166
seq2: B6Ng01-288N11.b_51_1227 (reverse)

seq1  TCCTGG-CTTCTCACTTGGATGGTGTTTACCCCCCCATGTGCTTTCCTTA  49
      |||||| |||||||||||||| |||  || ||| |  ||||| || ||||
seq2  TCCTGGACTTCTCACTTGGAT-GTG-ATAACCCACAGTGTGCCTTACTTA  48

seq1  A-CTGTTTCTTCAAACCA-GTTTGT--CTTCCTCTTGGGCACCCAGAAAG  95
      | ||||| || ||| ||| || |||   ||| || | ||||| |||||||
seq2  AGCTGTTCCTCCAAGCCAGGTATGTTCTTTCTTCATTGGCACTCAGAAAG  98

seq1  ACCACAATGCCT--GCACTCTAACTAC-ATGAAGCTTCATCCCTGA-GTT  141
      | ||||||||||   ||||| |||||| ||||||||||||||  || |||
seq2  A-CACAATGCCTTGCCACTCAAACTACAATGAAGCTTCATCCTGGAGGTT  147

seq1  CCAATGAGATATTTCT-AGTGAAATGGATACCCCTTCTAGAATCATCTAC  190
      |||||||||||||||| ||||||||||||||||||||||  |||||||||
seq2  CCAATGAGATATTTCTAAGTGAAATGGATACCCCTTCTAAGATCATCTAC  197

seq1  TGGAGAGCCT-CCAGACCCC--AAAGCTGGCAAAGCCCAAGGTGGAAGAA  237
      |||||||||| |||||||||  || |||||||||||||||||||||||||
seq2  TGGAGAGCCTCCCAGACCCCCAAAGGCTGGCAAAGCCCAAGGTGGAAGAA  247

seq1  -TTCCAGGTCCCAGAGTCACTTCATAGGAGACTGTGTACCCATAACAATT  286
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTCCCAGAGTCACTTCATAGGAGACTGTGTACCCATAACAATT  297

seq1  GGACAGTGACCCGGAGATTAGTGAGGGAGCTTTCCTTGCTGAGAAGCTGG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGACCCGGAGATTAGTGAGGGAGCTTTCCTTGCTGAGAAGCTGG  347

seq1  GCATGGGATTTTTCTGCTATAGCATTTAAGCTAGCAGGTAATCTACTGAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGATTTTTCTGCTATAGCATTTAAGCTAGCAGGTAATCTACTGAG  397

seq1  TGGGAAAGTTCTCAGAAAACAGGTAGGGGCTAACAAGACATTGAGACGCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTTCTCAGAAAACAGGTAGGGGCTAACAAGACATTGAGACGCA  447

seq1  GTGTTCGGCGGATAAACACCAATACCACTTGCTCACTTTCCTCTTGAGCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGGCGGATAAACACCAATACCACTTGCTCACTTTCCTCTTGAGCT  497

seq1  AAGCTCACACCCTCATACTAAACTCTCCTAAGCTCGTTGGTGGCAGACAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACACCCTCATACTAAACTCTCCTAAGCTCGTTGGTGGCAGACAC  547

seq1  TCAGCTGTCCCTGACGTCATTCCACCCCTGGCTGACCACTTCCTTCAGAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTCCCTGACGTCATTCCACCCCTGGCTGACCACTTCCTTCAGAG  597

seq1  TACAGGCCAGCTGCATGGAACCAGGCCTTGAGGCAATCTCTATGGGTTCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCAGCTGCATGGAACCAGGCCTTGAGGCAATCTCTATGGGTTCA  647

seq1  GTCCTGCTTCCAGGAGAAGACATTTATCCCAATACATGTCCTCAGGAATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTCCAGGAGAAGACATTTATCCCAATACATGTCCTCAGGAATC  697

seq1  CCTTCCAATTTCCCAGCCCTAGGAAAAGAACTGACATCTAGGAAGTAAGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATTTCCCAGCCCTAGGAAAAGAACTGACATCTAGGAAGTAAGA  747

seq1  ATGCATGACTATGTCTAAATTTGATTAAGACAAATGCTGGATTTCAAACT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGACTATGTCTAAATTTGATTAAGACAAATGCTGGATTTCAAACT  797

seq1  CAGGACCAGGCATGGAGGGGGTTCTGATGGAGTCGAGGTTTCGGCCTGTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGGCATGGAGGGGGTTCTGATGGAGTCGAGGTTTCGGCCTGTC  847

seq1  ATGACTCACTTTATTCTTCCTCTTTCAAACCTATGATGTGGTGTCTGAGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCACTTTATTCTTCCTCTTTCAAACCTATGATGTGGTGTCTGAGG  897

seq1  TGTTTGCCTGACTTTAACCTGACTTATTCTGTATATACATATATTTGTTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTGACTTTAACCTGACTTATTCTGTATATACATATATTTGTTT  947

seq1  AGGAGGCATGTAGTGGGTCTGAGCTCTGTGCTCCCTGGAAACAAGCCTAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCATGTAGTGGGTCTGAGCTCTGTGCTCCCTGGAAACAAGCCTAG  997

seq1  ATGCAACTGATTGACATTCTTCCACATGAAAAATCAGACCTAGTAGGAAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTGATTGACATTCTTCCACATGAAAAATCAGACCTAGTAGGAAA  1047

seq1  TAAGGACAGGAAGAGCACTTTAGGAACAGGACCCGGGCCTGAGATGGGTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAGGAAGAGCACTTTAGGAACAGGACCCGGGCCTGAGATGGGTG  1097

seq1  GTCCCCATGTGATTTCTATAGCTGTTTCCCTGACTATGGTGTTTAGCAAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATGTGATTTCTATAGCTGTTTCCCTGACTATGGTGTTTAGCAAG  1147

seq1  AGCTCAGTTTTATGTGAATCCAGAGAATTC  1166
      ||||||||||||||||||||||||||||||
seq2  AGCTCAGTTTTATGTGAATCCAGAGAATTC  1177

seq1: chr8_131045498_131046613
seq2: B6Ng01-288N11.g_69_1197

seq1  GAATTCACTAACGCCAACCTCTGAAGGCTGACTGTGTCTCTTCTGAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACGCCAACCTCTGAAGGCTGACTGTGTCTCTTCTGAGGGC  50

seq1  TGATTATGTGAAGCCATGCTCAGAACTTAAGCCAACCAAGACTGGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGTGAAGCCATGCTCAGAACTTAAGCCAACCAAGACTGGAGATT  100

seq1  TTACTCCACAGATATTAAGACCCCCAGAAATCAGGTTTTTACTGTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCACAGATATTAAGACCCCCAGAAATCAGGTTTTTACTGTTGCCT  150

seq1  CTTTCCAGAGCCTAGTTGTACAAAATGTACCAGTGTAACCACCAAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAGCCTAGTTGTACAAAATGTACCAGTGTAACCACCAAAAGGG  200

seq1  TGAGAACTCTTCTTTGCCGTCTTTGACCCGAAAAATTAGATTTGTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCTTCTTTGCCGTCTTTGACCCGAAAAATTAGATTTGTCAGCT  250

seq1  TGTTTACATAAAGGATATTGGAAGCCACAGGCAGTGCAGGGTATCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATAAAGGATATTGGAAGCCACAGGCAGTGCAGGGTATCTCACT  300

seq1  AAGAGTCAGGATCAAAGTGTGGGAGTTTGGAAGAGAGCAGAAGGATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGGATCAAAGTGTGGGAGTTTGGAAGAGAGCAGAAGGATGTTT  350

seq1  AAGAGAGGGCAGGGAACTGGGGAAAGTGTTCAATGTGTAAAGCGCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGCAGGGAACTGGGGAAAGTGTTCAATGTGTAAAGCGCTTGCT  400

seq1  TTGCAAACATAAAGACTTGAGTTAGATCCCAGAACCTGTGTATAAAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACATAAAGACTTGAGTTAGATCCCAGAACCTGTGTATAAAGCTG  450

seq1  AGTATGGTGGCACTCACTTGTAATACTAGAACCTGGGAGGTGTCACTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGTGGCACTCACTTGTAATACTAGAACCTGGGAGGTGTCACTGGG  500

seq1  GATTGCCAGCCAGCCAACGTAACCTAATAAGTGAACTCCACATTCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAGCCAGCCAACGTAACCTAATAAGTGAACTCCACATTCAGAGT  550

seq1  TACACACACACGCACACACACACACACACACACACACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACGCACACACACACACACACACACACACACACACACACACA  600

seq1  CAACCAAGGAAGAGGAACAATCTATGTTAGACACTGGCGCAGAGCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAGGAAGAGGAACAATCTATGTTAGACACTGGCGCAGAGCAGAGG  650

seq1  CAACTTGGAAACTGACCCAGAGTAAGCATTACGCAGTGGAAGAAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGAAACTGACCCAGAGTAAGCATTACGCAGTGGAAGAAGAGAAA  700

seq1  AGTGGGCTGCAGGGAGTCATTGAAAAGGAAGTTTTCATTAGGAAAGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCTGCAGGGAGTCATTGAAAAGGAAGTTTTCATTAGGAAAGCAAG  750

seq1  CAATAGCCACTCAGAAGGACAGAGGCAGCCATCATTTTGAAGCTATGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCACTCAGAAGGACAGAGGCAGCCATCATTTTGAAGCTATGGGG  800

seq1  TGACACTAGAAGGCAGAATGTTTATGGGTCTTGGCCATGTACCATCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTAGAAGGCAGAATGTTTATGGGTCTTGGCCATGTACCATCAGAA  850

seq1  GCCTTTTTAATTTCCAGGAGTATCACAGCCTGATTACCAGCAGGTAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTAATTTCCAGGAGTATCACAGCCTGATTACCAGCAGGTAGATC  900

seq1  -TAAGGAGGGACTT-GGAGTCCTGTTTCC-TTGGAAACTGCAAAGTGAAG  947
       ||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TTAAGGAGGGACTTGGGAGTCCTGTTTCCTTTGGAAACTGCAAAGTGAAG  950

seq1  CCAACTGTGAAAAGCCTTGC-ACAAATCCCTCATCACC-TGTTTT-GGAA  994
      ||||||||| |||||||||| |||||  |||||||||| |||||| ||||
seq2  CCAACTGTG-AAAGCCTTGCAACAAAATCCTCATCACCTTGTTTTGGGAA  999

seq1  GCTGAAGCCTCTTCCCCATGA--CAAAGT-GACCCAGGAGGCTCAGGTCC  1041
      ||||||  |||||||||||||   ||||| || |||||||||||||||||
seq2  GCTGAAAGCTCTTCCCCATGAACAAAAGTGGAACCAGGAGGCTCAGGTCC  1049

seq1  TC-AGGC-AAGCATGGC-ACATCC-ATTTCT-ACCGAAGCAAATCAAACA  1086
      || |||| |||||| || |||||| |||||| || ||||||| |||||  
seq2  TCAAGGCAAAGCATTGCAACATCCAATTTCTAACGGAAGCAATTCAAAAC  1099

seq1  ACCTTAGTGTTTCATAGT-GTTGGATCTGAG  1116
      || |||||| |||||||| ||||||||||||
seq2  ACTTTAGTG-TTCATAGTGGTTGGATCTGAG  1129