BAC Information

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BAC

Clone NameB6Ng01-290B04
Chromosome8 (Build37)
Map Location 120,438,563 - 120,630,175
singlet/doubletdoublet
Overlap genenone
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290B04.bB6Ng01-290B04.g
ACCGA087304GA087305
length1,087962
definitionB6Ng01-290B04.b B6Ng01-290B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,438,563 - 120,439,636)(120,629,215 - 120,630,175)
sequence
gaattctctgtgccagaacaccctgggacactggtttctgttttctcttg
ttagtatgtatcagtgacaagcaggcacttctatcaggcaattctgctat
agacgcacacgtgctgaagctaggtggaagggaccctgatgctgggcatt
cgatctgggatttcctgtcaggtagacagatcaaaatgatgggctgaaac
gaaaggaccaaggggaacaggaagaaacttgcagcccaggatggacactg
agaagtcctttgcagaagtgagggattgcagggaccttgttgaacagcac
agagccaattagggccaattctgtgatatgttgactcataaagctacaag
tctgagctgaggtaacagaagccctctgttaagatcaagggagatccttg
tccccttgtcttctgacattttatcaggcctcagctacatagtatatctg
agtatatgtatcagagacaggcactttcctagttagataaactggtatga
ggcacaaaaagttctctatcctgccacacagaaggctcacacactgggtg
ctagacaaatgttagggtctcaaagtggcccaacggcctaacgtatacct
gatttctaaccccaagcatcttacaggtgggtgggtttggtttgcttttc
ctgcctcagcactcctttttaattaaactaaattaaatttatttatttag
aaacaaggcctcactatgtagaccaggctggcttcaagcccatggagagc
ttcctgcctctaccctctgacttctgagatgaaaagcaggcaccaccgca
gcattcttttggtgtctttttggatgttgtcatgggtctgcctgcttccg
tttgcctttctgtcttcttttctcgccggagtgatggcatttattctctt
tccactgcaaagcatctaccatatttctgtggaaaatgatggggggcaca
ttctcaaaaccttttcatctgtctgatatgttaaagttcccctctcctgg
tgttcattgaatcagacgaaactgggtggaactttggttttagtcatttt
ggtttacttctgacgggctactttgtgggtaaatggt
gaattccttggacagacctataaaatgcggtattaggcagccacagtggt
agacgcaacacgaggaaccctgagaacatctacagacagtgtaaagagac
aatcacaaaaaggttgtatattgttcaatttatatgaaatttccatatag
gctaagcaagcaagctagcaagcaagctgacttctggaggctgagaacat
ggatgatggttgatcatgaacaggcttctttgtgcatgatgaaattgttc
tgaaagcaactgcaggaatggttattcaattctacattaaaaaaaaaatc
ctactcgagtattcttttaaatgctcacactgtatagtgtgtgagttaga
cgtcaataaagcaattaccaagggtaggagaagtccaagcaggagcaaaa
gaaaccaccacagtgaagctcagagcgagaggcaggggtgagctggtgct
ggctgcaaggcagcttgggcttgactggttcttgcaaccaggcgttgatg
agccaaagattctcatcaaaactgattgctatgctcctgtgggagacttg
cttccccccattctcaggcatttgaaaaactgaagtcagtggctcagaga
ccccaaccagctgtgagatctcctctgggaccccaggattctgttggttc
cgtgtttgcagcaaatcagccctggatgggtgagaaacggctccagatgg
agctgcccagatgtgcgttcttgcatggctgtcctctgtctcctctgcaa
tgagcctcacaggctgccacttaggcaggaacttgggctgtggcagccgt
gaggaaagaggcagggggtggcattgctttgataacttagaaaggttttc
aagcagtcacttctctggctgctgtgaaagtaatgttttaggagcaaaat
gaggacaatgaggaagggtcagagagaagcagggtggtgggggcagggaa
tatggtgaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120438563_120439636
seq2: B6Ng01-290B04.b_47_1133

seq1  GAATTCTCTGTGCCAGAACACCCTGGGACACTGGTTTCTGTTTTCTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCCAGAACACCCTGGGACACTGGTTTCTGTTTTCTCTTG  50

seq1  TTAGTATGTATCAGTGACAAGCAGGCACTTCTATCAGGCAATTCTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGTATCAGTGACAAGCAGGCACTTCTATCAGGCAATTCTGCTAT  100

seq1  AGACGCACACGTGCTGAAGCTAGGTGGAAGGGACCCTGATGCTGGGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCACACGTGCTGAAGCTAGGTGGAAGGGACCCTGATGCTGGGCATT  150

seq1  CGATCTGGGATTTCCTGTCAGGTAGACAGATCAAAATGATGGGCTGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTGGGATTTCCTGTCAGGTAGACAGATCAAAATGATGGGCTGAAAC  200

seq1  GAAAGGACCAAGGGGAACAGGAAGAAACTTGCAGCCCAGGATGGACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACCAAGGGGAACAGGAAGAAACTTGCAGCCCAGGATGGACACTG  250

seq1  AGAAGTCCTTTGCAGAAGTGAGGGATTGCAGGGACCTTGTTGAACAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCTTTGCAGAAGTGAGGGATTGCAGGGACCTTGTTGAACAGCAC  300

seq1  AGAGCCAATTAGGGCCAATTCTGTGATATGTTGACTCATAAAGCTACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAATTAGGGCCAATTCTGTGATATGTTGACTCATAAAGCTACAAG  350

seq1  TCTGAGCTGAGGTAACAGAAGCCCTCTGTTAAGATCAAGGGAGATCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTGAGGTAACAGAAGCCCTCTGTTAAGATCAAGGGAGATCCTTG  400

seq1  TCCCCTTGTCTTCTGACATTTTATCAGGCCTCAGCTACATAGTATATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGTCTTCTGACATTTTATCAGGCCTCAGCTACATAGTATATCTG  450

seq1  AGTATATGTATCAGAGACAGGCACTTTCCTAGTTAGATAAACTGGTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGTATCAGAGACAGGCACTTTCCTAGTTAGATAAACTGGTATGA  500

seq1  GGCACAAAAAGTTCTCTATCCTGCCACACAGAAGGCTCACACACTGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAAAGTTCTCTATCCTGCCACACAGAAGGCTCACACACTGGGTG  550

seq1  CTAGACAAATGTTAGGGTCTCAAAGTGGCCCAACGGCCTAACGTATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAAATGTTAGGGTCTCAAAGTGGCCCAACGGCCTAACGTATACCT  600

seq1  GATTTCTAACCCCAAGCATCTTACAGGTGGGTGGGTTTGGTTTGCTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTAACCCCAAGCATCTTACAGGTGGGTGGGTTTGGTTTGCTTTTC  650

seq1  CTGCCTCAGCACTCCTTTTTAATTAAACTAAATTAAATTTATTTATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGCACTCCTTTTTAATTAAACTAAATTAAATTTATTTATTTAG  700

seq1  AAACAAGGCCTCACTATGTAGACCAGGCTGGCTTCAAGCCCATGGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGCCTCACTATGTAGACCAGGCTGGCTTCAAGCCCATGGAGAGC  750

seq1  TTCCTGCCTCTACCCTCTGACTTCTGAGATGAAAAGCAGGCACCACCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTCTACCCTCTGACTTCTGAGATGAAAAGCAGGCACCACCGCA  800

seq1  GCATTCTTTTGGTGTCTTTTTGGATGTTGTCATGGGTCTGCCTGCTTCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTTGGTGTCTTTTTGGATGTTGTCATGGGTCTGCCTGCTTCCG  850

seq1  TTTGCCTTTCTGTCTTCTTTTCTCGCCGGAGTGATGGCA-TTATTCTC-T  898
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TTTGCCTTTCTGTCTTCTTTTCTCGCCGGAGTGATGGCATTTATTCTCTT  900

seq1  TCCACTGCAAAGCATCTACCATATTTCTGTGGAAAATGAT-GGGGGCACA  947
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCACTGCAAAGCATCTACCATATTTCTGTGGAAAATGATGGGGGGCACA  950

seq1  -TCTCAAAACCTTTTCATCTGTCTGATATGTTAAAGT--CCCTCTCCTGG  994
       ||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TTCTCAAAACCTTTTCATCTGTCTGATATGTTAAAGTTCCCCTCTCCTGG  1000

seq1  TGTTCATTG-ATCAGACGAAACT-GGTGGA--CTTGGTTTTAGTCATTT-  1039
      ||||||||| ||||||||||||| ||||||   |||||||||||||||| 
seq2  TGTTCATTGAATCAGACGAAACTGGGTGGAACTTTGGTTTTAGTCATTTT  1050

seq1  -GGTTACTCTTGACGGGGCTAC-TTGTGGGT-AATGGT  1074
       | |||||  |||| ||||||| |||||||| ||||||
seq2  GGTTTACTTCTGAC-GGGCTACTTTGTGGGTAAATGGT  1087

seq1: chr8_120629215_120630175
seq2: B6Ng01-290B04.g_67_1028 (reverse)

seq1  CTCTTCACCAT-TTCCCTGCCCCCCCACCCCTGCTTCTCTCTGACCCTTC  49
      ||||||||||| |||||||||||| |  ||||||||||||||||||||||
seq2  CTCTTCACCATATTCCCTGCCCCCACCACCCTGCTTCTCTCTGACCCTTC  50

seq1  CTCATTGTCCTCATTTTGCTCCTAAAACATTACTTTCACAGCAGCCAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTCCTCATTTTGCTCCTAAAACATTACTTTCACAGCAGCCAGAG  100

seq1  AAGTGACTGCTTGAAAACCTTTCTAAGTTATCAAAGCAATGCCACCCCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGCTTGAAAACCTTTCTAAGTTATCAAAGCAATGCCACCCCCT  150

seq1  GCCTCTTTCCTCACGGCTGCCACAGCCCAAGTTCCTGCCTAAGTGGCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTCCTCACGGCTGCCACAGCCCAAGTTCCTGCCTAAGTGGCAGC  200

seq1  CTGTGAGGCTCATTGCAGAGGAGACAGAGGACAGCCATGCAAGAACGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGCTCATTGCAGAGGAGACAGAGGACAGCCATGCAAGAACGCAC  250

seq1  ATCTGGGCAGCTCCATCTGGAGCCGTTTCTCACCCATCCAGGGCTGATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCAGCTCCATCTGGAGCCGTTTCTCACCCATCCAGGGCTGATTT  300

seq1  GCTGCAAACACGGAACCAACAGAATCCTGGGGTCCCAGAGGAGATCTCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAACACGGAACCAACAGAATCCTGGGGTCCCAGAGGAGATCTCAC  350

seq1  AGCTGGTTGGGGTCTCTGAGCCACTGACTTCAGTTTTTCAAATGCCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTGGGGTCTCTGAGCCACTGACTTCAGTTTTTCAAATGCCTGAG  400

seq1  AATGGGGGGAAGCAAGTCTCCCACAGGAGCATAGCAATCAGTTTTGATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGAAGCAAGTCTCCCACAGGAGCATAGCAATCAGTTTTGATGA  450

seq1  GAATCTTTGGCTCATCAACGCCTGGTTGCAAGAACCAGTCAAGCCCAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTGGCTCATCAACGCCTGGTTGCAAGAACCAGTCAAGCCCAAGC  500

seq1  TGCCTTGCAGCCAGCACCAGCTCACCCCTGCCTCTCGCTCTGAGCTTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCAGCCAGCACCAGCTCACCCCTGCCTCTCGCTCTGAGCTTCAC  550

seq1  TGTGGTGGTTTCTTTTGCTCCTGCTTGGACTTCTCCTACCCTTGGTAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTTTCTTTTGCTCCTGCTTGGACTTCTCCTACCCTTGGTAATT  600

seq1  GCTTTATTGACGTCTAACTCACACACTATACAGTGTGAGCATTTAAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGACGTCTAACTCACACACTATACAGTGTGAGCATTTAAAAGA  650

seq1  ATACTCGAGTAGGATTTTTTTTTTAATGTAGAATTGAATAACCATTCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCGAGTAGGATTTTTTTTTTAATGTAGAATTGAATAACCATTCCTG  700

seq1  CAGTTGCTTTCAGAACAATTTCATCATGCACAAAGAAGCCTGTTCATGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTTTCAGAACAATTTCATCATGCACAAAGAAGCCTGTTCATGAT  750

seq1  CAACCATCATCCATGTTCTCAGCCTCCAGAAGTCAGCTTGCTTGCTAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCATCCATGTTCTCAGCCTCCAGAAGTCAGCTTGCTTGCTAGCT  800

seq1  TGCTTGCTTAGCCTATATGGAAATTTCATATAAATTGAACAATATACAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTAGCCTATATGGAAATTTCATATAAATTGAACAATATACAAC  850

seq1  CTTTTTGTGATTGTCTCTTTACACTGTCTGTAGATGTTCTCAGGGTTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTGATTGTCTCTTTACACTGTCTGTAGATGTTCTCAGGGTTCCT  900

seq1  CGTGTTGCGTCTACCACTGTGGCTGCCTAATACCGCATTTTATAGGTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTGCGTCTACCACTGTGGCTGCCTAATACCGCATTTTATAGGTCTG  950

seq1  TCCAAGGAATTC  961
      ||||||||||||
seq2  TCCAAGGAATTC  962