BAC Information

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BAC

Clone NameB6Ng01-290E09
Chromosome8 (Build37)
Map Location 39,960,496 - 40,166,856
singlet/doubletdoublet
Overlap geneTusc3
Upstream geneSgcz
Downstream geneLOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290E09.bB6Ng01-290E09.g
ACCGA087454GA087455
length2271,171
definitionB6Ng01-290E09.b B6Ng01-290E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,166,630 - 40,166,856)(39,960,496 - 39,961,671)
sequence
tacatttgctctttgggaaagatgaatcttttctcatttgactttcatgc
aaaatcaaatttatattttagtttctcagagaatatttagttctaataaa
gtttgacatattaaaatatattctcattttgtggttctataacaagagga
tttattttcaaggttttccctttcatttagagagtgaaacggggagggat
ggaagtggagagtgtgtgtgtatgtat

gaattccaataatgcaatccataataatctgctaattaaagactaagata
aagaaacaacaagaccccaaataactcaggagttattccttatactgttg
aagagcagattttcggctgagattatacaaaactgtaagtaaacagtaga
ctctggtcatctaataaaagctttttctttatatctttgaaggaaaatac
attatctctaatagttgtagtaaatatgtaaatgcattcctcctgggctt
gctcctactatctagtctttactcatgtctgccttgcattatcattgcca
cttataaatatctgttggctccaaatgcttgcagtcacttagttgattac
cagcaaaaagttatgctttgaatcataccagttttctgattagaaataat
gtaatggatattagcttcattcagtcatcatttattcatttatagttgtt
gaatgggtaatgataatctattgagtacctacagtgtatcacatgcacaa
acaagtaaatgtactcctgctccttgctctcataggactatgagataggc
tttcatctagcagtacatgtataccttactgttaaagtaaatgatatgaa
aaaaaaagaccatttaccttttgaggtagagattttagggactatttgct
taggaagttatgcttgacacttgaaagctaagcaaatataaccaagacca
ccaccacccccaaaaaagaaaaacagaaaaggagataaactgaagaactt
gatgcacagtggagagtgttgtcatgcaaagtcactgtggtcatagaaaa
caaggcatatctgctgaattaaaactgccatatgggggaagagaaaaaag
agtagacaaagcaagacatgcaaagcaaagactagacaatgcttgtagga
tctgtagaggatcttagtgtttctcccaagagcaacaggaagcaatggaa
attttaaagcaagagtgatatgatcaattttcattttaataaggatgttg
actggagatgtgactttgttagactacctgttctgcagcctggaaacctg
ggtttcaatctcagtacccctaaaaactgattacgcactcactctggtaa
ctcaacattggtgactgaactaacttcaaggtaaggaccttgtccgattg
ccagtcttgtgccccaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40166630_40166856
seq2: B6Ng01-290E09.b_48_274 (reverse)

seq1  ATACATACACACACACTCTCCACTTCCATCCCTCCCCGTTTCACTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACACACACTCTCCACTTCCATCCCTCCCCGTTTCACTCTCTA  50

seq1  AATGAAAGGGAAAACCTTGAAAATAAATCCTCTTGTTATAGAACCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGGAAAACCTTGAAAATAAATCCTCTTGTTATAGAACCACAAA  100

seq1  ATGAGAATATATTTTAATATGTCAAACTTTATTAGAACTAAATATTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATATATTTTAATATGTCAAACTTTATTAGAACTAAATATTCTCT  150

seq1  GAGAAACTAAAATATAAATTTGATTTTGCATGAAAGTCAAATGAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTAAAATATAAATTTGATTTTGCATGAAAGTCAAATGAGAAAAG  200

seq1  ATTCATCTTTCCCAAAGAGCAAATGTA  227
      |||||||||||||||||||||||||||
seq2  ATTCATCTTTCCCAAAGAGCAAATGTA  227


seq1: chr8_39960496_39961671
seq2: B6Ng01-290E09.g_69_1239

seq1  GAATTCCAATAATGCAATCCATAATAATCTGCTAATTAAAGACTAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAATGCAATCCATAATAATCTGCTAATTAAAGACTAAGATA  50

seq1  AAGAAACAACAAGACCCCAAATAACTCAGGAGTTATTCCTTATACTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAACAAGACCCCAAATAACTCAGGAGTTATTCCTTATACTGTTG  100

seq1  AAGAGCAGATTTTCGGCTGAGATTATACAAAACTGTAAGTAAACAGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGATTTTCGGCTGAGATTATACAAAACTGTAAGTAAACAGTAGA  150

seq1  CTCTGGTCATCTAATAAAAGCTTTTTCTTTATATCTTTGAAGGAAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCATCTAATAAAAGCTTTTTCTTTATATCTTTGAAGGAAAATAC  200

seq1  ATTATCTCTAATAGTTGTAGTAAATATGTAAATGCATTCCTCCTGGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTAATAGTTGTAGTAAATATGTAAATGCATTCCTCCTGGGCTT  250

seq1  GCTCCTACTATCTAGTCTTTACTCATGTCTGCCTTGCATTATCATTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTACTATCTAGTCTTTACTCATGTCTGCCTTGCATTATCATTGCCA  300

seq1  CTTATAAATATCTGTTGGCTCCAAATGCTTGCAGTCACTTAGTTGATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAATATCTGTTGGCTCCAAATGCTTGCAGTCACTTAGTTGATTAC  350

seq1  CAGCAAAAAGTTATGCTTTGAATCATACCAGTTTTCTGATTAGAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAAGTTATGCTTTGAATCATACCAGTTTTCTGATTAGAAATAAT  400

seq1  GTAATGGATATTAGCTTCATTCAGTCATCATTTATTCATTTATAGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGATATTAGCTTCATTCAGTCATCATTTATTCATTTATAGTTGTT  450

seq1  GAATGGGTAATGATAATCTATTGAGTACCTACAGTGTATCACATGCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGTAATGATAATCTATTGAGTACCTACAGTGTATCACATGCACAA  500

seq1  ACAAGTAAATGTACTCCTGCTCCTTGCTCTCATAGGACTATGAGATAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAATGTACTCCTGCTCCTTGCTCTCATAGGACTATGAGATAGGC  550

seq1  TTTCATCTAGCAGTACATGTATACCTTACTGTTAAAGTAAATGATATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTAGCAGTACATGTATACCTTACTGTTAAAGTAAATGATATGAA  600

seq1  AAAAAAAGACCATTTACCTTTTGAGGTAGAGATTTTAGGGACTATTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACCATTTACCTTTTGAGGTAGAGATTTTAGGGACTATTTGCT  650

seq1  TAGGAAGTTATGCTTGACACTTGAAAGCTAAGCAAATATAACCAAGACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTTATGCTTGACACTTGAAAGCTAAGCAAATATAACCAAGACCA  700

seq1  CCACCACCCCCAAAAAAGAAAAACAGAAAAGGAGATAAACTGAAGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCCCAAAAAAGAAAAACAGAAAAGGAGATAAACTGAAGAACTT  750

seq1  GATGCACAGTGGAGAGTGTTGTCATGCAAAGTCACTGTGGTCATAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACAGTGGAGAGTGTTGTCATGCAAAGTCACTGTGGTCATAGAAAA  800

seq1  CAAGGCATATCTGCTGAATTAAAACTGCCATATGGGGGAAGAGAAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATATCTGCTGAATTAAAACTGCCATATGGGGGAAGAGAAAAAAG  850

seq1  AGTAGACAAAGCAAGACATGCAAAGCAAAGACTAGACAATGCTTGTAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACAAAGCAAGACATGCAAAGCAAAGACTAGACAATGCTTGTAGGA  900

seq1  TCTGTAGAGGATCTTAGTGTTTCTCCCAAGAGCAACAGGAAGCAATGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGAGGATCTTAGTGTTTCTCCCAAGAGCAACAGGAAGCAATGGAA  950

seq1  ATTTTAAAGCAAGAAGTGATATGATCAATTTTCATTTTAATAAGGATGTT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCAAG-AGTGATATGATCAATTTTCATTTTAATAAGGATGTT  999

seq1  GACTGGAGATGTGACTTGGTAAGACTACCTGTTCTGCAAGCCTGGGAACC  1050
      ||||||||||||||||| || |||||||||||||||| ||||||| ||||
seq2  GACTGGAGATGTGACTTTGTTAGACTACCTGTTCTGC-AGCCTGGAAACC  1048

seq1  TGGGTTCAAATCTCAAGTACCCCTTAAAAAACTGATTACGGCACTCACTT  1100
      ||||||  |||||| |||||||||  ||||||||||||| ||||||||| 
seq2  TGGGTTTCAATCTC-AGTACCCCT--AAAAACTGATTAC-GCACTCACTC  1094

seq1  CTGTAACTCCAACATTGGTGAGTGGACATAATTTAAGGTGAAGGAGCTTG  1150
        |||||| |||||||||||| || ||  | || ||||| ||||| ||||
seq2  TGGTAACT-CAACATTGGTGACTGAACTAACTTCAAGGT-AAGGACCTTG  1142

seq1  CCCGATAGCCAGTCTTG---CCCAAACAG  1176
       ||||| ||||||||||   |||||||||
seq2  TCCGATTGCCAGTCTTGTGCCCCAAACAG  1171


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