BAC Information

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BAC

Clone NameB6Ng01-291C17
Chromosome8 (Build37)
Map Location 5,149,242 - 5,149,986
singlet/doubletsinglet
Overlap genenone
Upstream geneB130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291C17.bB6Ng01-291C17.g
ACCGA088129GA088130
length1,231981
definitionB6Ng01-291C17.b B6Ng01-291C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgatccccattttttaattggggttatttgat
tttctggagtccaccttcttgagttctttatatgatattggatattggtc
ccctatctgatttagtaaagatcctttcccaacctgttttggtggccttt
ttgttttattgacagtgtcttttgccttacagaagctttgcaattttatg
agaacccatttgtcaattctcgatcttacagcacaagccactgctgttct
attcaggaatttttcccttgtgcccttatcttcgaggcttttccccacat
tgtcttctataagtttcactgtctctggttttatgtggagttccttgatc
caattagatttgaccttagtacaaggagataggaatggatcaattcgcat
tcttctacatgataactgccagttgtgccagcacatggctgagaagcacc
tgaaaaaaaatgttcagcatccttaatcatcagggaaatgcaaatcaaaa
caaccctgagattccacctcacaccagtcagaatggctaagatcaaaaat
tcaggtgacagcagatgctgaaaaggatgtggagaaagaggaagactcct
ccattgttggtgggattgcaagcttttacgactactctggaaatcattct
ggtggttcctcagaaaatttgacatagtactacaggaggaccccacaata
cctctccttggcatatatccagaagatgttccaactggtaggaagaacac
atgttacactatgttcatagcagcctaattcataatagccagaagctgga
aagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtac
atttacacaatggagtactactcagctattaaaaagaatgaatttatgaa
attcctaggcaaatggatggacctggagggcatcatcctgaatgagtaac
ccatcacaaaagactcacatgatttgtactcactgataagtggatataag
cccagaaacttagatacccagatataagaatcatttgccaaacaccatgg
aaactccagagaccgaagacccagtatgggaccacttggcccctctttag
aatggacaaaaccccatgaagatttagagacaaagttggcttgaatgaag
gatgaccactccagagacatcctacgatctccatacgcctcaaatgcgta
cacattgccatacccttgacagaatttgcga
gaattccttacccaaacatatatgaaataataagtgcttattgagcaatt
aagtattgacactttgttattgaaacatggataataaatactatagaata
cagatacagtatatgtgtcagtttaaattaatttataggtttggaaggga
aattttgaatgttcaagaaaataattctagaaactaagcatgcataattt
tgctttattggtcaatatactatgaaagaagcaataataaaatagaaaaa
aaaaagcccaggaccagatggatttagtgcagagttctatcagaccttca
gagaagacctaataccaatatgcctcaaactattgcacaaaatagaaata
aaaggtactctacccaattcattctatgaagccacaattgctctgatacc
taaaccacacaaagactcaacaaagaaagagatcttcagacgaatttcca
tcatgaatatcaatgcaaaaatattcaataaaattcttgccaactaaatc
caaggatacattaaaacaaacatccatcatgatcaagtaagcttcattcc
agggtttcagggacggttcaatttatggaaagccatcaacataatccaat
ctataaactaattcaaagaaaaaaaaacacaggactatctcattagatgc
tgtgaaagcatttgacaaagtccaacaccctttcataaaaaaagtcttag
aaagatcaggaattcaaggcccaaacctaaacatactaaatgcaatatac
agcaaactagtagccaacatcaaactaaatggtgagatactgaaagcaat
cacactgaaatcatggactagacaaggctgcccactctctccctatctat
tcaatatagtacttgaaatcatgcccagagcaattagacaacaaaaggag
ataaaaggagtataatttgggaaaggaagaagtcaaaatatcactatttg
caaatgatatgatagtgtacataactgaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5149242_5149986
seq2: B6Ng01-291C17.g_67_811

seq1  GAATTCCTTACCCAAACATATATGAAATAATAAGTGCTTATTGAGCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCCAAACATATATGAAATAATAAGTGCTTATTGAGCAATT  50

seq1  AAGTATTGACACTTTGTTATTGAAACATGGATAATAAATACTATAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGACACTTTGTTATTGAAACATGGATAATAAATACTATAGAATA  100

seq1  CAGATACAGTATATGTGTCAGTTTAAATTAATTTATAGGTTTGGAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGTATATGTGTCAGTTTAAATTAATTTATAGGTTTGGAAGGGA  150

seq1  AATTTTGAATGTTCAAGAAAATAATTCTAGAAACTAAGCATGCATAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAATGTTCAAGAAAATAATTCTAGAAACTAAGCATGCATAATTT  200

seq1  TGCTTTATTGGTCAATATACTATGAAAGAAGCAATAATAAAATAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTGGTCAATATACTATGAAAGAAGCAATAATAAAATAGAAAAA  250

seq1  AAAAAGCCCAGGACCAGATGGATTTAGTGCAGAGTTCTATCAGACCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCCAGGACCAGATGGATTTAGTGCAGAGTTCTATCAGACCTTCA  300

seq1  GAGAAGACCTAATACCAATATGCCTCAAACTATTGCACAAAATAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACCTAATACCAATATGCCTCAAACTATTGCACAAAATAGAAATA  350

seq1  AAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTGCTCTGATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTGCTCTGATACC  400

seq1  TAAACCACACAAAGACTCAACAAAGAAAGAGATCTTCAGACGAATTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACACAAAGACTCAACAAAGAAAGAGATCTTCAGACGAATTTCCA  450

seq1  TCATGAATATCAATGCAAAAATATTCAATAAAATTCTTGCCAACTAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATATCAATGCAAAAATATTCAATAAAATTCTTGCCAACTAAATC  500

seq1  CAAGGATACATTAAAACAAACATCCATCATGATCAAGTAAGCTTCATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATACATTAAAACAAACATCCATCATGATCAAGTAAGCTTCATTCC  550

seq1  AGGGTTTCAGGGACGGTTCAATTTATGGAAAGCCATCAACATAATCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCAGGGACGGTTCAATTTATGGAAAGCCATCAACATAATCCAAT  600

seq1  CTATAAACTAATTCAAAGAAAAAAAAACACAGGACTATCTCATTAGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACTAATTCAAAGAAAAAAAAACACAGGACTATCTCATTAGATGC  650

seq1  TGTGAAAGCATTTGACAAAGTCCAACACCCTTTCATAAAAAAAGTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGCATTTGACAAAGTCCAACACCCTTTCATAAAAAAAGTCTTAG  700

seq1  AAAGATCAGGAATTCAAGGCCCAAACCTAAACATACTAAATGCAA  745
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAGGAATTCAAGGCCCAAACCTAAACATACTAAATGCAA  745