BAC Information

Click to search

BAC

Clone NameB6Ng01-293N07
Chromosome8 (Build37)
Map Location 23,746,236 - 23,866,410
singlet/doubletdoublet
Overlap genePolb, Ikbkb
Upstream geneDefcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4
Downstream genePlat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293N07.bB6Ng01-293N07.g
ACCGA090114GA090115
length1,1191,097
definitionB6Ng01-293N07.b B6Ng01-293N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,865,283 - 23,866,410)(23,746,236 - 23,747,342)
sequence
gaattcactgtttagttctccaggctagacccatggaattgtttcctttg
tctgttctcagtctagagttaacagacgttcgctcatatccgcttagaag
tagtaaaggcagcatatactgtccaggccttcatctgcactggagactta
cactggctagctggaccaggtgggtgaattgcaggctcatgcactccctg
aggaaaaaaatggataggacaaagcaaagtcctcttggagatggtgatag
ctatgaagaatcgcttaccagactgtacaagagggatttgcactattcta
acaaatcgttcgaagtgatgaaaatgaaaagttaaaaatcaggcaattct
cctggagcagacttctgaaattttaacctaataacaataagttttaaaat
tccacacatgattataaaaccttgggttctgtttgtttgtttgtttgctt
gcttgcttgttttggaactatgtaactcaggctgaccttgaactccaaga
atgcaccatccagaagcctggtctaaaccattgttttgatcatgtgacac
tgaagataatttagatgctcaaaaatagaggagtattggcattcgacata
tcagcatagtacagtattgtatggtctgaggatgattgataccacagtta
tatagacataccaaaattaggaatatcaccttgcccctaagtgtgatgta
aattctataaaccccacaaggatgagtagataaagattaaaacacagcat
tagggctcgattgctgtagcaacggatggatttttcttttcagtttcttt
catggtacctgcataccactctgagaaaaagaaagtgacttcataccaga
tgcaggcacatctggatatgcccagctcatgaatcttacaccagcatgag
gaagcagcagctgtccatacaggcaggttccaatgacagaaatgtgcttt
tagtgacttaccatggtcttgctccggaatctattcaacttcttttcaaa
cagattgtattttcagtcagtcttggtggtagaatcaagtttcctttagt
tgatctgtttgaatcctcaactagattctttctttggaccactgccacct
cattgagcttccatccagc
gaattctcagcagccatgaagatctggatacgagagcgggccatcactat
tctgtcctcaagggaggatgggcttacaagaccccacctctccctgagga
tttacaggttgctagtgaagagaagctgaagagggatcatgtaattcctc
cttaggatctacatgatattaatggtggtgaaaggggactctcttttctt
tagtggtttagacactgctcagtggcccaggcatgtataaatgaccctcc
ccgagtccggggctcaggaaatcaccattgatctactttaccatgatgca
ctttgtctttctcagtcattgccttgcacctcagctaacaggcgttcctc
tcagtcatgtgacacgggaaagtgcacatggagaaaaacaaacccaaatg
aagtcaccagaagaaaggcaagccaaggaaaaacgtgagattttgattgt
cattagctttcctgctctcttatgcagagagacttatctgtttttaatat
atttgccaccttttttttttttttgagatacggtctgactctgtggcctg
gtgtgacctgaaattcactacgtagtccgggcagggcttgaactcatggc
aaccttcctgcttcaacctgagtgctgggttaacatctcaggccaaaggc
cacagaactctgacagttgagcagagtggattttataaagtctctgcaag
tgcccttttgtaggctcccagcacaaggttttccccagtgtgtcctgtca
tgaacctaactaaatcccctttctcccttctgtaaccgatgtaacagatt
actaatcaggcttggcgatgcttttcttatttttcttttccttcctttct
ttttttctttttttttttttttttttgagatgggttttcccacctggaac
tcattaaggcatttcgaaacctcactcattaaaaagtcttctgagtcaga
agaatatggaaactacttgatattttagaaagaatttactttcgagctgt
tattataatagtttaaagagccaaatttctgctatatttgttgattcaaa
tataacaatggtacagaaatctttagtactatctgaagtagctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_23865283_23866410
seq2: B6Ng01-293N07.b_47_1165 (reverse)

seq1  GCTGGATTGGAAGCTCAATGAGGTGGCAGTGGGCCCAAAGAAAGGAAATC  50
      |||||| ||||||||||||||||||||||| || ||||||||||  ||| 
seq2  GCTGGA-TGGAAGCTCAATGAGGTGGCAGT-GGTCCAAAGAAAG--AAT-  45

seq1  CTAGTTTGAAGATTCAAAACAGATCAACCTAAGG-AACTTGATTCCTACC  99
      |||| |||| ||||| ||||||||||||  |||| ||||||||| |||||
seq2  CTAG-TTGAGGATTC-AAACAGATCAACTAAAGGAAACTTGATT-CTACC  92

seq1  ACCAAGGAACTGACTGAAAATACAATCTGTTTGGAAAGAAGTTGAATAGA  149
      ||||||  ||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCAAG--ACTGACTGAAAATACAATCTGTTTGAAAAGAAGTTGAATAGA  140

seq1  TTCCGGAGCAAGACCATGGTAAGTCACTAAAAGCACATTTCTGTCATTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGAGCAAGACCATGGTAAGTCACTAAAAGCACATTTCTGTCATTGG  190

seq1  AACCTGCCTGTATGGACAGCTGCTGCTTCCTCATGCTGGTGTAAGATTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTGTATGGACAGCTGCTGCTTCCTCATGCTGGTGTAAGATTCA  240

seq1  TGAGCTGGGCATATCCAGATGTGCCTGCATCTGGTATGAAGTCACTTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGGCATATCCAGATGTGCCTGCATCTGGTATGAAGTCACTTTCT  290

seq1  TTTTCTCAGAGTGGTATGCAGGTACCATGAAAGAAACTGAAAAGAAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGAGTGGTATGCAGGTACCATGAAAGAAACTGAAAAGAAAAAT  340

seq1  CCATCCGTTGCTACAGCAATCGAGCCCTAATGCTGTGTTTTAATCTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGTTGCTACAGCAATCGAGCCCTAATGCTGTGTTTTAATCTTTAT  390

seq1  CTACTCATCCTTGTGGGGTTTATAGAATTTACATCACACTTAGGGGCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATCCTTGTGGGGTTTATAGAATTTACATCACACTTAGGGGCAAG  440

seq1  GTGATATTCCTAATTTTGGTATGTCTATATAACTGTGGTATCAATCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTCCTAATTTTGGTATGTCTATATAACTGTGGTATCAATCATCC  490

seq1  TCAGACCATACAATACTGTACTATGCTGATATGTCGAATGCCAATACTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCATACAATACTGTACTATGCTGATATGTCGAATGCCAATACTCC  540

seq1  TCTATTTTTGAGCATCTAAATTATCTTCAGTGTCACATGATCAAAACAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTGAGCATCTAAATTATCTTCAGTGTCACATGATCAAAACAAT  590

seq1  GGTTTAGACCAGGCTTCTGGATGGTGCATTCTTGGAGTTCAAGGTCAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGACCAGGCTTCTGGATGGTGCATTCTTGGAGTTCAAGGTCAGCC  640

seq1  TGAGTTACATAGTTCCAAAACAAGCAAGCAAGCAAACAAACAAACAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACATAGTTCCAAAACAAGCAAGCAAGCAAACAAACAAACAAACA  690

seq1  GAACCCAAGGTTTTATAATCATGTGTGGAATTTTAAAACTTATTGTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAGGTTTTATAATCATGTGTGGAATTTTAAAACTTATTGTTATT  740

seq1  AGGTTAAAATTTCAGAAGTCTGCTCCAGGAGAATTGCCTGATTTTTAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAATTTCAGAAGTCTGCTCCAGGAGAATTGCCTGATTTTTAACT  790

seq1  TTTCATTTTCATCACTTCGAACGATTTGTTAGAATAGTGCAAATCCCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTCATCACTTCGAACGATTTGTTAGAATAGTGCAAATCCCTCT  840

seq1  TGTACAGTCTGGTAAGCGATTCTTCATAGCTATCACCATCTCCAAGAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCTGGTAAGCGATTCTTCATAGCTATCACCATCTCCAAGAGGA  890

seq1  CTTTGCTTTGTCCTATCCATTTTTTTCCTCAGGGAGTGCATGAGCCTGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTGTCCTATCCATTTTTTTCCTCAGGGAGTGCATGAGCCTGCA  940

seq1  ATTCACCCACCTGGTCCAGCTAGCCAGTGTAAGTCTCCAGTGCAGATGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCCACCTGGTCCAGCTAGCCAGTGTAAGTCTCCAGTGCAGATGAA  990

seq1  GGCCTGGACAGTATATGCTGCCTTTACTACTTCTAAGCGGATATGAGCGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGACAGTATATGCTGCCTTTACTACTTCTAAGCGGATATGAGCGA  1040

seq1  ACGTCTGTTAACTCTAGACTGAGAACAGACAAAGGAAACAATTCCATGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTTAACTCTAGACTGAGAACAGACAAAGGAAACAATTCCATGGG  1090

seq1  TCTAGCCTGGAGAACTAAACAGTGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  TCTAGCCTGGAGAACTAAACAGTGAATTC  1119

seq1: chr8_23746236_23747342
seq2: B6Ng01-293N07.g_68_1164

seq1  GAATTCTCAGCAGCCATGAAGATCTGGATACGAGAGCGGGCCATCACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGCCATGAAGATCTGGATACGAGAGCGGGCCATCACTAT  50

seq1  TCTGTCCTCAAGGGAGGATGGGCTTACAAGACCCCACCTCTCCCTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCAAGGGAGGATGGGCTTACAAGACCCCACCTCTCCCTGAGGA  100

seq1  TTTACAGGTTGCTAGTGAAGAGAAGCTGAAGAGGGATCATGTAATTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTTGCTAGTGAAGAGAAGCTGAAGAGGGATCATGTAATTCCTC  150

seq1  CTTAGGATCTACATGATATTAATGGTGGTGAAAGGGGACTCTCTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATCTACATGATATTAATGGTGGTGAAAGGGGACTCTCTTTTCTT  200

seq1  TAGTGGTTTAGACACTGCTCAGTGGCCCAGGCATGTATAAATGACCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTTAGACACTGCTCAGTGGCCCAGGCATGTATAAATGACCCTCC  250

seq1  CCGAGTCCGGGGCTCAGGAAATCACCATTGATCTACTTTACCATGATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCCGGGGCTCAGGAAATCACCATTGATCTACTTTACCATGATGCA  300

seq1  CTTTGTCTTTCTCAGTCATTGCCTTGCACCTCAGCTAACAGGCGTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTTCTCAGTCATTGCCTTGCACCTCAGCTAACAGGCGTTCCTC  350

seq1  TCAGTCATGTGACACGGGAAAGTGCACATGGAGAAAAACAAACCCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATGTGACACGGGAAAGTGCACATGGAGAAAAACAAACCCAAATG  400

seq1  AAGTCACCAGAAGAAAGGCAAGCCAAGGAAAAACGTGAGATTTTGATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCAGAAGAAAGGCAAGCCAAGGAAAAACGTGAGATTTTGATTGT  450

seq1  CATTAGCTTTCCTGCTCTCTTATGCAGAGAGACTTATCTGTTTTTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTTCCTGCTCTCTTATGCAGAGAGACTTATCTGTTTTTAATAT  500

seq1  ATTTGCCACCTTTTTTTTTTTTTTGAGATACGGTCTGACTCTGTGGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCACCTTTTTTTTTTTTTTGAGATACGGTCTGACTCTGTGGCCTG  550

seq1  GTGTGACCTGAAATTCACTACGTAGTCCGGGCAGGGCTTGAACTCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACCTGAAATTCACTACGTAGTCCGGGCAGGGCTTGAACTCATGGC  600

seq1  AACCTTCCTGCTTCAACCTGAGTGCTGGGTTAACATCTCAGGCCAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCTGCTTCAACCTGAGTGCTGGGTTAACATCTCAGGCCAAAGGC  650

seq1  CACAGAACTCTGACAGTTGAGCAGAGTGGATTTTATAAAGTCTCTGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACTCTGACAGTTGAGCAGAGTGGATTTTATAAAGTCTCTGCAAG  700

seq1  TGCCCTTTTGTAGGCTCCCAGCACAAGGTTTTCCCCAGTGTGTCCTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTGTAGGCTCCCAGCACAAGGTTTTCCCCAGTGTGTCCTGTCA  750

seq1  TGAACCTAACTAAATCCCCTTTCTCCCTTCTGTAACCGATGTAACAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTAACTAAATCCCCTTTCTCCCTTCTGTAACCGATGTAACAGATT  800

seq1  ACTAATCAGGCTTGGCGATGCTTTTCTTATTTTTCTTTTCCTTCCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCAGGCTTGGCGATGCTTTTCTTATTTTTCTTTTCCTTCCTTTCT  850

seq1  TTTTTTC--TTTTTTTTTTTTTTTTTGAGATGGGTTTTCCCACCTGGAAC  898
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTTTTTTTTTTTTTTTTGAGATGGGTTTTCCCACCTGGAAC  900

seq1  TCATT-AGGCATTTCG-AACCTCACTCATT-AAAAGTCTTCTGAGTCAG-  944
      ||||| |||||||||| ||||||||||||| |||||||||||||||||| 
seq2  TCATTAAGGCATTTCGAAACCTCACTCATTAAAAAGTCTTCTGAGTCAGA  950

seq1  AGAATAT-GAAACCACTTGATATTTTAGGAAAGAATTTAC-TTCGAGCCT  992
      ||||||| ||||| ||||||||||||| |||||||||||| |||||| ||
seq2  AGAATATGGAAACTACTTGATATTTTA-GAAAGAATTTACTTTCGAG-CT  998

seq1  GTTATTATTAATAGTTTTAAAGAGC--AAATTCTGCCTAATTAT-TTTGG  1039
      ||||||| |||||| ||||||||||  || ||||||     ||| |||| 
seq2  GTTATTA-TAATAG-TTTAAAGAGCCAAATTTCTGC-----TATATTTGT  1041

seq1  TGATTCAAATTATTAACAAAGTGTTTACAAGAAAATCTTTTAGTAAACTA  1089
      ||||||||||   |||||| |    ||||   ||||| ||||||  ||||
seq2  TGATTCAAAT--ATAACAATG---GTACA--GAAATC-TTTAGT--ACTA  1081

seq1  TTCTGAGGGTAGCTCTGC  1107
       |||||  ||||||||||
seq2  -TCTGA-AGTAGCTCTGC  1097