BAC Information

Click to search

BAC

Clone NameB6Ng01-294C06
Chromosome8 (Build37)
Map Location 38,191,843 - 38,300,015
singlet/doubletdoublet
Overlap geneLOC641121
Upstream geneD8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik
Downstream geneLOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294C06.bB6Ng01-294C06.g
ACCGA090345GA090346
length1,1261,197
definitionB6Ng01-294C06.b B6Ng01-294C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,191,843 - 38,192,973)(38,298,805 - 38,300,015)
sequence
gaattcacagaggcagtagagaagtattggatagatttgagtgaatgagt
taggacaggcattcatccagagtaatagaagagcacggaagcgtttagat
agagttagagggctctaggtgtgataataagactttgcagtgttcgctga
ttgcttcaggtttcttgacttagatgaattgcaagtaaggttacagagat
ggaggacagaaaagtggcagatacttgcggacagtgttgaaatccaaatg
cagtgtagtttatgttggcttttttttttaatggataaactttctttgct
aaaacaactcatttgctttgtacctcttatactgaaacagagttttggtg
agccactgaatttcactcaataaaattcatttatttaagatctactttag
cattttgattttctaggcttatatttcaatacagagacatgtccaccttt
ctttagaaaggtcttggggcagtggttctcaacttttcttatgctgccac
ccattaatacagtcctgatgttgtggtgactccaccaaccataaaaatat
tttttattgctacttcatagctctaagtttgatcctggtatgggccaaca
gtgtaaatatctgtggtttctggtggtattagattatccgtgtgaaagag
ttatgagcaaagatggagaatcactcctttagggagtcattctatgtcaa
gctatagcaaacccaaaacataaatgtaaagttctgcataccttctagct
tactctgtaggctcgacatctgcaaaggacaggggctgctgtcctttctt
cttgcttcacacttaccccttgcacagtcagtgatctactgagctctaat
ggaacagacttggagtacagctgtgtaccacagctactggaacaggtaaa
cacaaactgcctttaaaagcaaatgtattcacacaattctagaaacagaa
atctagatcaaaatgttagcagagttgtctttctgggagctatggggagt
ccagcccatgtagaggtttgctgcaaactccatcatttcctgattctgta
gaatctaacagtatgtgaccggatatccagctggtagctctggcctttat
tatggctatatttttattttttatga

gaattccttacttttcaagcttcccaaacattgtgggtaaaacaaacaaa
caaacaaacaaacaaacgaacaaaaacaaaaacaaacaaacaaaaaaaaa
gcatttttcctttaaaatcaacattctaatttataaaagagtcccaggcc
ttttctagggctgctaagtcaggctacaacatatacacatttagggatga
gaaattttgaaggcactacttgccctgcgttgtctcttgcccttcggaat
tatccttgggatgcaatctgagccatcagtaagatgccagcagacaagag
tgaacttggctctcttgtgtccttttccttcttccagcagtcaagtacac
atctttctgaaactgcagaagctttctcaagcatataatttgtggcttcc
agtgagtttgaacttcatgcttgaattgatacacgaataactgatttaat
tcatgcacctgtatctggacgttttccagacataatgaaatggataacta
cttcagagtttctctaatatatatttcagcaagacatcagaaagggactg
atgacatatttgggcaggagagagagcaccctgttaccaaaagtgctgtg
atagacatctgggctccacccttgagacaaaaaacagcattttctggctc
cagaggccaagccctttggcttcagagactttcaattttctcattacaaa
cactatggtacccaaaggaattcctgtcggctttctaattattttctcag
tttgaaataagaccttgtctttaataagagagagagatttctgtcacagg
attgttttcagtgtgaacacaacaatgcaaagaaagagttcatgaagaga
acagccacaagatctcaaaaacggagggaggtgttttgtataaatctccc
tataaattagcaaaatataacatcctgcagtaaatgctatcatcttcaga
gagacagattttaaagagaaatgaaagaaatactttcaccttcttttgga
tggtagtatttcatatactatcagaaggtcacacaattgctgcagcagtc
aatactccctaacaagcatcaaggtttagagcatggtatttgttatattt
ctttctagctattttaagagcacttcacgaatatgtgcaatgcctgagat
gttttgtcattttggaaaccacgagagagaacgtgaccatattaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38191843_38192973
seq2: B6Ng01-294C06.b_46_1171

seq1  GAATTCACAGAGGCAGTAGAGAAGTATTGGATAGATTTGAGTGAATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGGCAGTAGAGAAGTATTGGATAGATTTGAGTGAATGAGT  50

seq1  TAGGACAGGCATTCATCCAGAGTAATAGAAGAGCACGGAAGCGTTTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGGCATTCATCCAGAGTAATAGAAGAGCACGGAAGCGTTTAGAT  100

seq1  AGAGTTAGAGGGCTCTAGGTGTGATAATAAGACTTTGCAGTGTTCGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGAGGGCTCTAGGTGTGATAATAAGACTTTGCAGTGTTCGCTGA  150

seq1  TTGCTTCAGGTTTCTTGACTTAGATGAATTGCAAGTAAGGTTACAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGGTTTCTTGACTTAGATGAATTGCAAGTAAGGTTACAGAGAT  200

seq1  GGAGGACAGAAAAGTGGCAGATACTTGCGGACAGTGTTGAAATCCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACAGAAAAGTGGCAGATACTTGCGGACAGTGTTGAAATCCAAATG  250

seq1  CAGTGTAGTTTATGTTGGCTTTTTTTTTTAATGGATAAACTTTCTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGTTTATGTTGGCTTTTTTTTTTAATGGATAAACTTTCTTTGCT  300

seq1  AAAACAACTCATTTGCTTTGTACCTCTTATACTGAAACAGAGTTTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTCATTTGCTTTGTACCTCTTATACTGAAACAGAGTTTTGGTG  350

seq1  AGCCACTGAATTTCACTCAATAAAATTCATTTATTTAAGATCTACTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGAATTTCACTCAATAAAATTCATTTATTTAAGATCTACTTTAG  400

seq1  CATTTTGATTTTCTAGGCTTATATTTCAATACAGAGACATGTCCACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATTTTCTAGGCTTATATTTCAATACAGAGACATGTCCACCTTT  450

seq1  CTTTAGAAAGGTCTTGGGGCAGTGGTTCTCAACTTTTCTTATGCTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAGGTCTTGGGGCAGTGGTTCTCAACTTTTCTTATGCTGCCAC  500

seq1  CCATTAATACAGTCCTGATGTTGTGGTGACTCCACCAACCATAAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATACAGTCCTGATGTTGTGGTGACTCCACCAACCATAAAAATAT  550

seq1  TTTTTATTGCTACTTCATAGCTCTAAGTTTGATCCTGGTATGGGCCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGCTACTTCATAGCTCTAAGTTTGATCCTGGTATGGGCCAACA  600

seq1  GTGTAAATATCTGTGGTTTCTGGTGGTATTAGATTATCCGTGTGAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATATCTGTGGTTTCTGGTGGTATTAGATTATCCGTGTGAAAGAG  650

seq1  TTATGAGCAAAGATGGAGAATCACTCCTTTAGGGAGTCATTCTATGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAAAGATGGAGAATCACTCCTTTAGGGAGTCATTCTATGTCAA  700

seq1  GCTATAGCAAACCCAAAACATAAATGTAAAGTTCTGCATACCTTCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCAAACCCAAAACATAAATGTAAAGTTCTGCATACCTTCTAGCT  750

seq1  TACTCTGTAGGCTCGACATCTGCAAAGGACAGGGGCTGCTGTCCTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTAGGCTCGACATCTGCAAAGGACAGGGGCTGCTGTCCTTTCTT  800

seq1  CTTGCTTCACACTTACCCCTTGCACAGTCAGTGATCTACTGAGCTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCACACTTACCCCTTGCACAGTCAGTGATCTACTGAGCTCTAAT  850

seq1  GGAACAGACTTGGAGTACAGCTGTGTACCACAGCTACTGGAACAGGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGACTTGGAGTACAGCTGTGTACCACAGCTACTGGAACAGGTAAA  900

seq1  CACAAACTGCCTTTAAAAGCAAATGTATTCACACAATTCTAGAAACAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTGCCTTTAAAAGCAAATGTATTCACACAATTCTAGAAACAGAA  950

seq1  ATCTAAGATCAAAATGTTAGCAGAGTTGTC-TTCTGGGAGCTATGGGGGA  999
      |||| ||||||||||||||||||||||||| ||||||||||||| |||||
seq2  ATCT-AGATCAAAATGTTAGCAGAGTTGTCTTTCTGGGAGCTAT-GGGGA  998

seq1  GTCCAGCCCATGTAGAGGTTTGCTGCAAACTCCATCATTTCCTTGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  GTCCAGCCCATGTAGAGGTTTGCTGCAAACTCCATCATTTCCT--GATTC  1046

seq1  TGTAGAATCTAACAGTATGTTGAACCGGATATCCCAGCTGGTAGCTCTGG  1099
      ||||||||||||||||||||   ||||||||| |||||||||||||||||
seq2  TGTAGAATCTAACAGTATGT--GACCGGATAT-CCAGCTGGTAGCTCTGG  1093

seq1  CTTTTATTATGGGCTATATTTT--ATTTTTATGA  1131
      | |||||||| |||||||||||   |||||||||
seq2  CCTTTATTAT-GGCTATATTTTTATTTTTTATGA  1126


seq1: chr8_38298805_38300015
seq2: B6Ng01-294C06.g_68_1264 (reverse)

seq1  AGTT-ATATGGTCA--GTCTCTCT-GTGGTTTCCAAAATG-CAAAACATC  45
      |||| |||||||||   ||||||| ||||||||||||||| |||||||||
seq2  AGTTAATATGGTCACGTTCTCTCTCGTGGTTTCCAAAATGACAAAACATC  50

seq1  TTTCCAGCAATGCATATATTTTCTTTGTATGTGCTCTTTAAAAATAGCTA  95
        ||  ||| |||| |||  ||| |   | ||||||||  ||||||||||
seq2  --TCAGGCATTGCACATA--TTCGT--GAAGTGCTCTT--AAAATAGCTA  92

seq1  GAAAGAAATATAACAAATACCATGCTCTAAA-CTTGATGCCTTTGTTAGG  144
      ||||||||||||||||||||||||||||||| ||||||||  ||||||||
seq2  GAAAGAAATATAACAAATACCATGCTCTAAACCTTGATGC--TTGTTAGG  140

seq1  GAGTATTTGACTGCTGCAGCAATTGTGTGACCTTCTGAATAGTAATTATG  194
      ||||| ||||||||||||||||||||||||||||||| ||||||  ||||
seq2  GAGTA-TTGACTGCTGCAGCAATTGTGTGACCTTCTG-ATAGTA--TATG  186

seq1  AAAATACTACCATCCAAAAAGAAGGTGAAAGTATTTTCTTTCATTTTCTC  244
       |||||||||||||| ||||||||||||||||| ||||||||| ||||||
seq2  -AAATACTACCATCC-AAAAGAAGGTGAAAGTA-TTTCTTTCA-TTTCTC  232

seq1  TTTTAAAATCTGTCTCTCTGAAGATGATAGCATTTTACTGCAGGATGTTA  294
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  -TTTAAAATCTGTCTCTCTGAAGATGATAGCA-TTTACTGCAGGATGTTA  280

seq1  TATTTTGCTAATTTATAGGGAGATTTATACAAAACACCTCCCTCCGTTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTAATTTATAGGGAGATTTATACAAAACACCTCCCTCCGTTTT  330

seq1  TGAGATCTTGTGGCTGTTCTCTTCATGAACTCTTTCTTTGCATTGTTGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTTGTGGCTGTTCTCTTCATGAACTCTTTCTTTGCATTGTTGTG  380

seq1  TTCACACTGAAAACAATCCTGTGACAGAAATCTCTCTCTCTTATTAAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTGAAAACAATCCTGTGACAGAAATCTCTCTCTCTTATTAAAGA  430

seq1  CAAGGTCTTATTTCAAACTGAGAAAATAATTAGAAAGCCGACAGGAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTTATTTCAAACTGAGAAAATAATTAGAAAGCCGACAGGAATTC  480

seq1  CTTTGGGTACCATAGTGTTTGTAATGAGAAAATTGAAAGTCTCTGAAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTACCATAGTGTTTGTAATGAGAAAATTGAAAGTCTCTGAAGCC  530

seq1  AAAGGGCTTGGCCTCTGGAGCCAGAAAATGCTGTTTTTTGTCTCAAGGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTTGGCCTCTGGAGCCAGAAAATGCTGTTTTTTGTCTCAAGGGT  580

seq1  GGAGCCCAGATGTCTATCACAGCACTTTTGGTAACAGGGTGCTCTCTCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGATGTCTATCACAGCACTTTTGGTAACAGGGTGCTCTCTCTC  630

seq1  CTGCCCAAATATGTCATCAGTCCCTTTCTGATGTCTTGCTGAAATATATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAAATATGTCATCAGTCCCTTTCTGATGTCTTGCTGAAATATATA  680

seq1  TTAGAGAAACTCTGAAGTAGTTATCCATTTCATTATGTCTGGAAAACGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAACTCTGAAGTAGTTATCCATTTCATTATGTCTGGAAAACGTC  730

seq1  CAGATACAGGTGCATGAATTAAATCAGTTATTCGTGTATCAATTCAAGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGGTGCATGAATTAAATCAGTTATTCGTGTATCAATTCAAGCA  780

seq1  TGAAGTTCAAACTCACTGGAAGCCACAAATTATATGCTTGAGAAAGCTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCAAACTCACTGGAAGCCACAAATTATATGCTTGAGAAAGCTTC  830

seq1  TGCAGTTTCAGAAAGATGTGTACTTGACTGCTGGAAGAAGGAAAAGGACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTCAGAAAGATGTGTACTTGACTGCTGGAAGAAGGAAAAGGACA  880

seq1  CAAGAGAGCCAAGTTCACTCTTGTCTGCTGGCATCTTACTGATGGCTCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGCCAAGTTCACTCTTGTCTGCTGGCATCTTACTGATGGCTCAG  930

seq1  ATTGCATCCCAAGGATAATTCCGAAGGGCAAGAGACAACGCAGGGCAAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCCCAAGGATAATTCCGAAGGGCAAGAGACAACGCAGGGCAAGT  980

seq1  AGTGCCTTCAAAATTTCTCATCCCTAAATGTGTATATGTTGTAGCCTGAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTCAAAATTTCTCATCCCTAAATGTGTATATGTTGTAGCCTGAC  1030

seq1  TTAGCAGCCCTAGAAAAGGCCTGGGACTCTTTTATAAATTAGAATGTTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCCCTAGAAAAGGCCTGGGACTCTTTTATAAATTAGAATGTTGA  1080

seq1  TTTTAAAGGAAAAATGCTTTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGAAAAATGCTTTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTC  1130

seq1  GTTTGTTTGTTTGTTTGTTTGTTTGTTTTACCCACAATGTTTGGGAAGCT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTGTTTGTTTTACCCACAATGTTTGGGAAGCT  1180

seq1  TGAAAAGTAAGGAATTC  1211
      |||||||||||||||||
seq2  TGAAAAGTAAGGAATTC  1197


| Home | SequenceCutter | Blast | Download |