BAC Information

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BAC

Clone NameB6Ng01-294H11
Chromosome8 (Build37)
Map Location 55,523,674 - 55,524,822
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294H11.bB6Ng01-294H11.g
ACCGA090584GA090585
length1,2101,149
definitionB6Ng01-294H11.b B6Ng01-294H11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttctggaatttttcccctgtgcccatatcttcaaggcttttccccaa
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatttttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctgttccattgg
tctacttgtctgtctctataccagtaccatgcagttttttatcacaattg
ctctgtagtaaagctttaggtcaggcatggtgattccacaagaggttctt
ttatccttgagaagagtttttgctatcctcggttttttgttattccagat
gaatttgcaaatttctccttctaaatcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagacttgaagtttttatcat
acagatatttcactttccttagttagagtcatgccgagatatttatatta
ttgtgactattgagaagggtggttgttcctaatttctttctcagcctgtt
tattcttggtggtaggagaaagggcaatggacttgttggagttattttat
atccagctaccttcaccgagcttgtttattcaggttaagggagtctcctg
ggtgagttttacggttcaataattatatactatccatatctactggcaag
tgattttgaacgtcctcttttccaattggatgtcccccttgagatactcc
tcattatgag
gaattctaagagttctaaggatttgatgaagaatacatgggaacacagta
gaactatatagagagccagtgagttcctacacttgaagtaagaagttaat
gtccaaactttccattctacacttccctatatttctcttttcctcactgt
tgatggttttgaggtggctgcaggcttccttttctatacctttgatattt
gtaaagaatttgaaatcctctctgttattaattttcaaaagttatatcaa
aatgtttcacacatataaaaaataaactaaggttttcaacaacacctgag
gggattcacaggctgtggctttacagagatgcagggttctgcttagctta
agaacaacttcattatttgtgccttttgtcaaatgcacttaaaaaaaatc
agactcatgcaatagcttgtacccactacctcaccattaacagctttgat
ccttataaaccaaatttcataattatttatttataaaggttgctaatatt
tttctttattatactttaagatgttcaaagcctagaaagtttgacatatt
ctggttcttctttattttcaggaattgcaattgaaccgtcatagaacaat
gattcatagccattttccattatatcttatcaaaatgtatctcaatatta
actatcattgagcataaacacaaatgtacatgaatggaaatagatctgaa
actatcatttttttcccttgtgcccacgtgctccagactcttccccactt
ttgtttctatcattttcagtgtatctggttttatgtggaggtacttgacc
tacttggacttgagctttgtacaaggagataagaatggatcaatttgcat
tcttctacatgctaactaccagttgagccagcaccatttcttgaaaatgc
tgccttttttacactggatggttttagctccttgtcaacgatctagtcca
ccatagtgtggtgggttcatttctgggtcttcaatctattccattgatct
acctgcatgtcactatataaataccatgcattttatcacaatgctctgta
gtacaagcttgagtcaggatgttgattcccaacagaaaggtttcctttat
ggtgaagaaatagttttgttaatcctaggttttggttatccaggaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55523674_55524822
seq2: B6Ng01-294H11.g_66_1214 (reverse)

seq1  TTCTTCTGGAATAACAAAAAACCTAGGATAACAAAAACTA-TTCTCAACA  49
      ||||||  | |||||  |||||||||||| |  ||||||| ||||  || 
seq2  TTCTTCCTGGATAAC-CAAAACCTAGGATTAACAAAACTATTTCTTCACC  49

seq1  ATAAAAGAACC---TCTGGT-GGAATCACCATCCCTGACCTCAAGC-TGT  94
      ||||| ||| |   |||| | ||||||| ||| ||||| ||||||| |||
seq2  ATAAAGGAAACCTTTCTGTTGGGAATCAACAT-CCTGA-CTCAAGCTTGT  97

seq1  ACTACAGAGCAATTGTGATAAAAATGCATGGTATTATAATAGTGACATGC  144
      |||||||||| |||||||| |||||||||||||||   ||||||||||||
seq2  ACTACAGAGC-ATTGTGAT-AAAATGCATGGTATTTATATAGTGACATGC  145

seq1  AGGTAGATCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC-  193
      ||||||||||||||||||| ||||||||||||||||||||||||| ||| 
seq2  AGGTAGATCAATGGAATAG-ATTGAAGACCCAGAAATGAACCCAC-CACA  193

seq1  CTATGGT-GACTAGATCGTTGACAAAGGAGCTAAAACCATCCAGTGTAAA  242
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CTATGGTGGACTAGATCGTTGAC-AAGGAGCTAAAACCATCCAGTGTAAA  242

seq1  AAAGGCAGCATTTTCAAGAAATGGTGCTGGCTCAACTGGTAGTTAGCATG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCATTTTCAAGAAATGGTGCTGGCTCAACTGGTAGTTAGCATG  292

seq1  TAGAAGAATGCAAATTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAATGCAAATTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGT  342

seq1  CCAAGTAGGTCAAGTACCTCCACATAAAACCAGATACACTGAAAATGATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGGTCAAGTACCTCCACATAAAACCAGATACACTGAAAATGATA  392

seq1  GAAACAAAAGTGGGGAAGAGTCTGGAGCACGTGGGCACAAGGGAAAAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAGTGGGGAAGAGTCTGGAGCACGTGGGCACAAGGGAAAAAAA  442

seq1  TGATAGTTTCAGATCTATTTCCATTCATGTACATTTGTGTTTATGCTCAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTTCAGATCTATTTCCATTCATGTACATTTGTGTTTATGCTCAA  492

seq1  TGATAGTTAATATTGAGATACATTTTGATAAGATATAATGGAAAATGGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTAATATTGAGATACATTTTGATAAGATATAATGGAAAATGGCT  542

seq1  ATGAATCATTGTTCTATGACGGTTCAATTGCAATTCCTGAAAATAAAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCATTGTTCTATGACGGTTCAATTGCAATTCCTGAAAATAAAGAA  592

seq1  GAACCAGAATATGTCAAACTTTCTAGGCTTTGAACATCTTAAAGTATAAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAATATGTCAAACTTTCTAGGCTTTGAACATCTTAAAGTATAAT  642

seq1  AAAGAAAAATATTAGCAACCTTTATAAATAAATAATTATGAAATTTGGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATATTAGCAACCTTTATAAATAAATAATTATGAAATTTGGTT  692

seq1  TATAAGGATCAAAGCTGTTAATGGTGAGGTAGTGGGTACAAGCTATTGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGATCAAAGCTGTTAATGGTGAGGTAGTGGGTACAAGCTATTGCA  742

seq1  TGAGTCTGATTTTTTTTAAGTGCATTTGACAAAAGGCACAAATAATGAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGATTTTTTTTAAGTGCATTTGACAAAAGGCACAAATAATGAAG  792

seq1  TTGTTCTTAAGCTAAGCAGAACCCTGCATCTCTGTAAAGCCACAGCCTGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTAAGCTAAGCAGAACCCTGCATCTCTGTAAAGCCACAGCCTGT  842

seq1  GAATCCCCTCAGGTGTTGTTGAAAACCTTAGTTTATTTTTTATATGTGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCCTCAGGTGTTGTTGAAAACCTTAGTTTATTTTTTATATGTGTG  892

seq1  AAACATTTTGATATAACTTTTGAAAATTAATAACAGAGAGGATTTCAAAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGATATAACTTTTGAAAATTAATAACAGAGAGGATTTCAAAT  942

seq1  TCTTTACAAATATCAAAGGTATAGAAAAGGAAGCCTGCAGCCACCTCAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAATATCAAAGGTATAGAAAAGGAAGCCTGCAGCCACCTCAAA  992

seq1  ACCATCAACAGTGAGGAAAAGAGAAATATAGGGAAGTGTAGAATGGAAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAACAGTGAGGAAAAGAGAAATATAGGGAAGTGTAGAATGGAAAG  1042

seq1  TTTGGACATTAACTTCTTACTTCAAGTGTAGGAACTCACTGGCTCTCTAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACATTAACTTCTTACTTCAAGTGTAGGAACTCACTGGCTCTCTAT  1092

seq1  ATAGTTCTACTGTGTTCCCATGTATTCTTCATCAAATCCTTAGAACTCTT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTACTGTGTTCCCATGTATTCTTCATCAAATCCTTAGAACTCTT  1142

seq1  AGAATTC  1149
      |||||||
seq2  AGAATTC  1149