BAC Information

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BAC

Clone NameB6Ng01-295C16
Chromosome8 (Build37)
Map Location 108,537,003 - 108,670,876
singlet/doubletdoublet
Overlap geneDus2l, Nfatc3, Rbm35b
Upstream geneEG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28
Downstream geneLypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295C16.bB6Ng01-295C16.g
ACCGA091105GA091106
length1,148851
definitionB6Ng01-295C16.b B6Ng01-295C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,669,720 - 108,670,876)(108,537,003 - 108,537,847)
sequence
gaattcagtttgtagaccaggctggcctcgaactcagaaatctgcctgcc
tctgcctcccaagagctgggattaaagtagtgcgccaccactgccggact
atctcttcagtctttgtccacagacttgacactatcctaaactctgcaca
cctaaaatgataatacatatatgataaatacacatatatggtagatacag
atatgtgtgcttaagactcttaaaaggatttatttattttatgtatatga
gcacactgttgctgtctttaaagagttatttactatttatgctgtcttca
gatacaccaaagagagcatcagcttccattacagatggttgtgagccacc
atgtggttgctggggattgaacttgggccctctggaagagcagtcagtgc
tcttaactgctgagccatcatctctccagcctgttcgtggttttatgaga
tggggtctctctatgttatagtgtttgtcctagagtccctatgtagacca
ctgggctgacctcaaacccagagatcccctgcctctgcctccccaggttt
ggtattaaaagtgtgtggcaccacaccgagcttggttttattattttaaa
tgtcatggagtaggggaggtatgtggccatgaacaagaatacccttggag
gccagagttattggatcctatggacttgagttgcaggcagttgtaagcca
tccactatggttgctggaaagcaaacttgggtcttctgtaaaaaccgcat
gctcttaaccactgagccaatctccagcaccaacttcctgtttttctaac
ctacaatcttaggatagtcaataatttctttctaacctacaatattagtc
aataattcttgcctgcttttactcttgcaaagccaaactaccctcgtccc
acagcacctctgctgctggctttccactttatcccctaattctggaggaa
tgcactccgtgtgccagtggacaccatgaatcattagttaggccccacca
ctcatctccttctgtggtggctattcctggttgtctacttgactacatct
ggaatgagcacatacatccagaaatgaaagccgctttgtgatcagatctg
agttctggaagacatagaacctctgaccgatctgacatggataacaca
gaattccagcacttaaaattcagaggcgccgggcgtggtggcgcacgcct
ttaatcccagcacttgggaggcagaggcaggtggatttctgagtttgtgg
ccagcctggtctacaaagtgagctccaggacagccagggctacacagaga
aaccctgtctcaaccgccccccccctccaaaaaaaaaaaaaaaaagtcag
aggcaggtagatctctgagttggaggccggcctggtctgtatagcatgtt
ccagtcaacctgtactgtaatagcaagacccaccttaaaaaaaaaacaaa
cataggacataggttatttaattttatttttcttctttattgtagtgagg
atgcaggccagggcctgtgcattggtaatagtcaagtgccttactagtaa
gctacagtcctgatgcttgattgttgcccccgaccctgtgctttctttct
tcatggacccctggctagcttagagctcaccatgcccagccccaggccca
gccccagccccaacccctgactttttatttatttatttatttatttattt
atatgtaaatacactgtagctgacttcagacactccagaaaagggcgtca
gatctcatttacagatggtttgtgagccaccatatggttgctgggatttg
gaacccatgacccttttggaagagcagtcagtgctcttacctgctgagtc
atctcaccagcccaacccctgacttttcttttttgttttccacagtctcc
ctctttcgaaatatttctagaactgcttaccaacctcgtgaatcgctgta
atctctcaggttgattacggagtcgcctttgagttgtctccctgctgtct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108669720_108670876
seq2: B6Ng01-295C16.b_44_1191 (reverse)

seq1  TGTGTTATCCCATGTCAAGATCCGGGTCAGA-GTCCTATGTCTTCCAG-A  48
      |||||||| ||||||| |||||  ||||||| || ||||||||||||| |
seq2  TGTGTTAT-CCATGTC-AGATC--GGTCAGAGGTTCTATGTCTTCCAGAA  46

seq1  CTCAAGATCTGGATCACAAAGCCCGCCTTCCATTTCTGGATTGTATGTTG  98
      ||| |||||| ||||||||||  || ||| |||||||||| |||||| ||
seq2  CTC-AGATCT-GATCACAAAG--CGGCTTTCATTTCTGGA-TGTATG-TG  90

seq1  CTCATTCCAGATGTAGTCAAGTAGACAACCAGGAATAGCCACCACAGAAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCAGATGTAGTCAAGTAGACAACCAGGAATAGCCACCACAGAAG  140

seq1  GAGAATGAGTGGTGGGGCCTAACTTAATGATTCATGGTGTCCACTGGCAC  198
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAG-ATGAGTGGTGGGGCCTAAC-TAATGATTCATGGTGTCCACTGGCAC  188

seq1  ACGGAGTGCATTCCTCCAGAATTAGGGGATAAAGTGGAAAGCCAGCAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTGCATTCCTCCAGAATTAGGGGATAAAGTGGAAAGCCAGCAGCA  238

seq1  GAGGTGCTGTGGGACGAGGGTAGTTTGGCTTTGCAAGAGTAAAAGCAGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGTGGGACGAGGGTAGTTTGGCTTTGCAAGAGTAAAAGCAGGC  288

seq1  AAGAATTATTGACTAATATTGTAGGTTAGAAAG-AATTATTGACTATCCT  347
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAATTATTGACTAATATTGTAGGTTAGAAAGAAATTATTGACTATCCT  338

seq1  AAGATTGTAGGTTAGAAAAACAGGAAGTTGGTGCTGGAGATTGGCTCAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTAGGTTAGAAAAACAGGAAGTTGGTGCTGGAGATTGGCTCAGT  388

seq1  GGTTAAGAGCATGCGGTTTTTACAGAAGACCCAAGTTTGCTTTCCAGCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCATGCGGTTTTTACAGAAGACCCAAGTTTGCTTTCCAGCAA  438

seq1  CCATAGTGGATGGCTTACAACTGCCTGCAACTCAAGTCCATAGGATCCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTGGATGGCTTACAACTGCCTGCAACTCAAGTCCATAGGATCCAA  488

seq1  TAACTCTGGCCTCCAAGGGTATTCTTGTTCATGGCCACATACCTCCCCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGGCCTCCAAGGGTATTCTTGTTCATGGCCACATACCTCCCCTA  538

seq1  CTCCATGACATTTAAAATAATAAAACCAAGCTCGGTGTGGTGCCACACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGACATTTAAAATAATAAAACCAAGCTCGGTGTGGTGCCACACAC  588

seq1  TTTTAATACCAAACCTGGGGAGGCAGAGGCAGGGGATCTCTGGGTTTGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACCAAACCTGGGGAGGCAGAGGCAGGGGATCTCTGGGTTTGAG  638

seq1  GTCAGCCCAGTGGTCTACATAGGGACTCTAGGACAAACACTATAACATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCCAGTGGTCTACATAGGGACTCTAGGACAAACACTATAACATAG  688

seq1  AGAGACCCCATCTCATAAAACCACGAACAGGCTGGAGAGATGATGGCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCCATCTCATAAAACCACGAACAGGCTGGAGAGATGATGGCTCA  738

seq1  GCAGTTAAGAGCACTGACTGCTCTTCCAGAGGGCCCAAGTTCAATCCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGAGCACTGACTGCTCTTCCAGAGGGCCCAAGTTCAATCCCCA  788

seq1  GCAACCACATGGTGGCTCACAACCATCTGTAATGGAAGCTGATGCTCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGGCTCACAACCATCTGTAATGGAAGCTGATGCTCTCT  838

seq1  TTGGTGTATCTGAAGACAGCATAAATAGTAAATAACTCTTTAAAGACAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTATCTGAAGACAGCATAAATAGTAAATAACTCTTTAAAGACAGC  888

seq1  AACAGTGTGCTCATATACATAAAATAAATAAATCCTTTTAAGAGTCTTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTGCTCATATACATAAAATAAATAAATCCTTTTAAGAGTCTTAA  938

seq1  GCACACATATCTGTATCTACCATATATGTGTATTTATCATATATGTATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATATCTGTATCTACCATATATGTGTATTTATCATATATGTATTA  988

seq1  TCATTTTAGGTGTGCAGAGTTTAGGATAGTGTCAAGTCTGTGGACAAAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGGTGTGCAGAGTTTAGGATAGTGTCAAGTCTGTGGACAAAGA  1038

seq1  CTGAAGAGATAGTCCGGCAGTGGTGGCGCACTACTTTAATCCCAGCTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGATAGTCCGGCAGTGGTGGCGCACTACTTTAATCCCAGCTCTT  1088

seq1  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  1138

seq1  AACTGAATTC  1157
      ||||||||||
seq2  AACTGAATTC  1148

seq1: chr8_108537003_108537847
seq2: B6Ng01-295C16.g_69_919

seq1  GAATTCCAGCACTTAAAATTCAGAGGCGCCGGGCGTGGTGGCGCACGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTTAAAATTCAGAGGCGCCGGGCGTGGTGGCGCACGCCT  50

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGTGG  100

seq1  CCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTACACAGAGA  150

seq1  AACCCTGTCTCAACCGCCCCCCCCCTCCAAAAAAAAAAAAAAAAAGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAACCGCCCCCCCCCTCCAAAAAAAAAAAAAAAAAGTCAG  200

seq1  AGGCAGGTAGATCTCTGAGTTGGAGGCCGGCCTGGTCTGTATAGCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTAGATCTCTGAGTTGGAGGCCGGCCTGGTCTGTATAGCATGTT  250

seq1  CCAGTCAACCTGTACTGTAATAGCAAGACCCACCTTAAAAAAAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAACCTGTACTGTAATAGCAAGACCCACCTTAAAAAAAAAACAAA  300

seq1  CATAGGACATAGGTTATTTAATTTTATTTTTCTTCTTTATTGTAGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACATAGGTTATTTAATTTTATTTTTCTTCTTTATTGTAGTGAGG  350

seq1  ATGCAGGCCAGGGCCTGTGCATTGGTAATAGTCAAGTGCCTTACTAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCCAGGGCCTGTGCATTGGTAATAGTCAAGTGCCTTACTAGTAA  400

seq1  GCTACAGTCCTGATGCTTGATTGTTGCCCCCGACCCTGTGCTTTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTCCTGATGCTTGATTGTTGCCCCCGACCCTGTGCTTTCTTTCT  450

seq1  TCATGGACCCCTGGCTAGCTTAGAGCTCACCATGCCCAGCCCCAGGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGACCCCTGGCTAGCTTAGAGCTCACCATGCCCAGCCCCAGGCCCA  500

seq1  GCCCCAGCCCCAACCCCTGACTTTTTATTTATTTATTTATTTATTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCCCAACCCCTGACTTTTTATTTATTTATTTATTTATTTATTT  550

seq1  ATATGTAAATACACTGTAGCTGACTTCAGACACTCCAGAAAAGGGCGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAATACACTGTAGCTGACTTCAGACACTCCAGAAAAGGGCGTCA  600

seq1  GATCTCA-TTACAGATGG-TTGTGAGCCACCATATGGTTGCTGGGATTT-  647
      ||||||| |||||||||| |||||||||||||||||||||||||||||| 
seq2  GATCTCATTTACAGATGGTTTGTGAGCCACCATATGGTTGCTGGGATTTG  650

seq1  GAACCCATGACC--TTTGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGTC  695
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GAACCCATGACCCTTTTGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGTC  700

seq1  ATCTCACCAGCCCAACCCCTGAC-TTTCTTTTT--GTTTCCACAGTCTCT  742
      ||||||||||||||||||||||| |||||||||   ||||||||||||| 
seq2  ATCTCACCAGCCCAACCCCTGACTTTTCTTTTTTGTTTTCCACAGTCTCC  750

seq1  C-CCTTCGAAATATTTCTAGAACTGCTTACCAACCTCGTTGAATCGCTGT  791
      | | |||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTTTCGAAATATTTCTAGAACTGCTTACCAACCTCG-TGAATCGCTGT  799

seq1  CATCTCTCAAGTTGATTTACTGAGTTGCCTTTGAGTTGATCTCCCTGCTG  841
       |||||||| ||||| |||| |||| |||||||||||| |||||||||||
seq2  AATCTCTCAGGTTGA-TTACGGAGTCGCCTTTGAGTTG-TCTCCCTGCTG  847

seq1  TCTG  845
      ||||
seq2  TCTG  851