BAC Information

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BAC

Clone NameB6Ng01-296O01
Chromosome8 (Build37)
Map Location 104,993,879 - 105,171,342
singlet/doubletdoublet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296O01.bB6Ng01-296O01.g
ACCGA092377GA092378
length1,0551,169
definitionB6Ng01-296O01.b B6Ng01-296O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,170,286 - 105,171,342)(104,993,879 - 104,995,054)
sequence
gaattcatagatgtagagatggaaaacaaatgctttgtatattccacagc
acaaatattttcgctaatctaataattccttcctgttgaagaataaacaa
ggaataataatgctacttccgttttgacacatggactcatttgatacata
tgaataagtgaatctaattttattttcctcattttttttcacattagctt
tgatattcatgaagcagcaggaaaaccaagtggggaagcttacagggtca
atatgcaaacaactccatttatctaatttttaaaaaagattgataaaccc
ttcggggtaagcgtggctttatgaatattgataccaagtaaagcattaaa
agagattagttcaactttgtaaggcagcataatctttcacgtacaggcct
tcccctcaaaacctagttgcaatgcactgtggctgggaacagaactccag
atcaaaaagggctgacattggtattgctggaagaggtttaagtgaaacac
tgtccattgcaaacaagaacaggacagtattcaatgcagttcttggtttt
cattgtctgtcaaggaggatacagacttacagcttgctagaaggtcaagg
agatggtttggttgtatagacatatacaatcttggcatagtcctgggaca
aacttagtagtggagcccaggaacaaagaataagcgattgttttgacttg
cagacaagtctgcaatgctctgatcatttcttctcagtggagattgtgta
tgtaaagccatgttaatctcaacttatgaaattgatacaaccaatgccat
catctagggtgggaaacagagggaggcgttcttgatataggtgttcaagt
agctccaagttttccttataaacattgtagggctgttgccttcattatga
ctgagaacagactcagagcagagattgcaaactaatgtaatgaccataga
tacaatcgaacactgttatactgccttcggtaccataatgccagtcacgt
gatgcagcactgtgttgagaattcctccctagtctgttcactcagttttc
attgt

gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgaatctatcatttctaaa
cactttaaattttctttttcattcttcccaaatttctggataatttctgc
agtggtcaaccatgtacccataattcatattttataattctgttgcaatt
atccatcaaactattttatttctgttgcatttcaaattaactttcagaga
gtaatatgattcctcctcaatatttcagtacaatatacttaactaaaatt
ccaaacgttttatggtgtccattttctaaataaatgttatacatactttt
agatgcacaagctgtggctggctatgtaacagagaaatcagcctttgcct
ccatctaggaggccctggtttcaatgttcggtacttttaaaaaaaatgta
gactcattaactgcatcaatttaagggtattcatcacatgagctttgcta
aatatgcacacttgtctaagcaaatccttatgaaggaatagcatattaca
tcactacaggaaatccttacatctctctttccagcctcatctctttctga
acaacatttacaggcagtctgtgacctattagctcagcttctagctatgt
atatggcatcaatataaaaataaccacaagaaattgaaagttgatgagtt
ttgtcgacaatgatgatgtcaacaaaattaatgaaattgacctagttacc
catcagtccaaaaatcaatttaaggggaaatagtaaagagtgcatgttta
caggatgaaaataataaattaaaataataggatgttatagataaatcaca
tattttctttcactttaaagaagcaacacatatagtaactcaattctgtc
tgagagtagccagaaaagagagttttaggatttcatatactaggattcag
ctttaaatatttcctacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105170286_105171342
seq2: B6Ng01-296O01.b_49_1103 (reverse)

seq1  ACAATGAAAACTGAGTGAACAGACTAGGGGAGGAA-TCTCAACACAGTGC  49
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  ACAATGAAAACTGAGTGAACAGACTA-GGGAGGAATTCTCAACACAGTGC  49

seq1  TTGCATCACGGTGACTGGCATTATGGTACCGAAGGCAGTATAACAGTGTT  99
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TGCATCAC-GTGACTGGCATTATGGTACCGAAGGCAGTATAACAGTGTT  97

seq1  CGATTGTATCTATGGTCATTACATTAGTTTGCAATCTCTGCTCTGAGTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGTATCTATGGTCATTACATTAGTTTGCAATCTCTGCTCTGAGTCT  147

seq1  GTTCTCAGTCATAATGAAGGCAACAGCCCTACAATGTTTATAAGGAAAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGTCATAATGAAGGCAACAGCCCTACAATGTTTATAAGGAAAAC  197

seq1  TTGGAGCTACTTGAACACCTATATCAAGAACGCCTCCCTCTGTTTCCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTACTTGAACACCTATATCAAGAACGCCTCCCTCTGTTTCCCAC  247

seq1  CCTAGATGATGGCATTGGTTGTATCAATTTCATAAGTTGAGATTAACATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGATGGCATTGGTTGTATCAATTTCATAAGTTGAGATTAACATG  297

seq1  GCTTTACATACACAATCTCCACTGAGAAGAAATGATCAGAGCATTGCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACATACACAATCTCCACTGAGAAGAAATGATCAGAGCATTGCAGA  347

seq1  CTTGTCTGCAAGTCAAAACAATCGCTTATTCTTTGTTCCTGGGCTCCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGCAAGTCAAAACAATCGCTTATTCTTTGTTCCTGGGCTCCACT  397

seq1  ACTAAGTTTGTCCCAGGACTATGCCAAGATTGTATATGTCTATACAACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTTGTCCCAGGACTATGCCAAGATTGTATATGTCTATACAACCA  447

seq1  AACCATCTCCTTGACCTTCTAGCAAGCTGTAAGTCTGTATCCTCCTTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTCCTTGACCTTCTAGCAAGCTGTAAGTCTGTATCCTCCTTGAC  497

seq1  AGACAATGAAAACCAAGAACTGCATTGAATACTGTCCTGTTCTTGTTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAAAACCAAGAACTGCATTGAATACTGTCCTGTTCTTGTTTGC  547

seq1  AATGGACAGTGTTTCACTTAAACCTCTTCCAGCAATACCAATGTCAGCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGTGTTTCACTTAAACCTCTTCCAGCAATACCAATGTCAGCCC  597

seq1  TTTTTGATCTGGAGTTCTGTTCCCAGCCACAGTGCATTGCAACTAGGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATCTGGAGTTCTGTTCCCAGCCACAGTGCATTGCAACTAGGTTT  647

seq1  TGAGGGGAAGGCCTGTACGTGAAAGATTATGCTGCCTTACAAAGTTGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGAAGGCCTGTACGTGAAAGATTATGCTGCCTTACAAAGTTGAAC  697

seq1  TAATCTCTTTTAATGCTTTACTTGGTATCAATATTCATAAAGCCACGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTTTTAATGCTTTACTTGGTATCAATATTCATAAAGCCACGCTT  747

seq1  ACCCCGAAGGGTTTATCAATCTTTTTTAAAAATTAGATAAATGGAGTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGAAGGGTTTATCAATCTTTTTTAAAAATTAGATAAATGGAGTTGT  797

seq1  TTGCATATTGACCCTGTAAGCTTCCCCACTTGGTTTTCCTGCTGCTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATTGACCCTGTAAGCTTCCCCACTTGGTTTTCCTGCTGCTTCAT  847

seq1  GAATATCAAAGCTAATGTGAAAAAAAATGAGGAAAATAAAATTAGATTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAAAGCTAATGTGAAAAAAAATGAGGAAAATAAAATTAGATTCA  897

seq1  CTTATTCATATGTATCAAATGAGTCCATGTGTCAAAACGGAAGTAGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCATATGTATCAAATGAGTCCATGTGTCAAAACGGAAGTAGCATT  947

seq1  ATTATTCCTTGTTTATTCTTCAACAGGAAGGAATTATTAGATTAGCGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCTTGTTTATTCTTCAACAGGAAGGAATTATTAGATTAGCGAAA  997

seq1  ATATTTGTGCTGTGGAATATACAAAGCATTTGTTTTCCATCTCTACATCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTGCTGTGGAATATACAAAGCATTTGTTTTCCATCTCTACATCT  1047

seq1  ATGAATTC  1057
      ||||||||
seq2  ATGAATTC  1055


seq1: chr8_104993879_104995054
seq2: B6Ng01-296O01.g_68_1236

seq1  GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGAT  100

seq1  TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA  250

seq1  GAAAATTGGACATAGTACTACTGGAGGATCCCGAATCTATCATTTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATAGTACTACTGGAGGATCCCGAATCTATCATTTCTAAA  300

seq1  CACTTTAAATTTTCTTTTTCATTCTTCCCAAATTTCTGGATAATTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAATTTTCTTTTTCATTCTTCCCAAATTTCTGGATAATTTCTGC  350

seq1  AGTGGTCAACCATGTACCCATAATTCATATTTTATAATTCTGTTGCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCAACCATGTACCCATAATTCATATTTTATAATTCTGTTGCAATT  400

seq1  ATCCATCAAACTATTTTATTTCTGTTGCATTTCAAATTAACTTTCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAAACTATTTTATTTCTGTTGCATTTCAAATTAACTTTCAGAGA  450

seq1  GTAATATGATTCCTCCTCAATATTTCAGTACAATATACTTAACTAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGATTCCTCCTCAATATTTCAGTACAATATACTTAACTAAAATT  500

seq1  CCAAACGTTTTATGGTGTCCATTTTCTAAATAAATGTTATACATACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGTTTTATGGTGTCCATTTTCTAAATAAATGTTATACATACTTTT  550

seq1  AGATGCACAAGCTGTGGCTGGCTATGTAACAGAGAAATCAGCCTTTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACAAGCTGTGGCTGGCTATGTAACAGAGAAATCAGCCTTTGCCT  600

seq1  CCATCTAGGAGGCCCTGGTTTCAATGTTCGGTACTTTTAAAAAAAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGGAGGCCCTGGTTTCAATGTTCGGTACTTTTAAAAAAAATGTA  650

seq1  GACTCATTAACTGCATCAATTTAAGGGTATTCATCACATGAGCTTTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTAACTGCATCAATTTAAGGGTATTCATCACATGAGCTTTGCTA  700

seq1  AATATGCACACTTGTCTAAGCAAATCCTTATGAAGGAATAGCATATTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCACACTTGTCTAAGCAAATCCTTATGAAGGAATAGCATATTACA  750

seq1  TCACTACAGGAAATCCTTACATCTCTCTTTCCAGCCTCATCTCTTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACAGGAAATCCTTACATCTCTCTTTCCAGCCTCATCTCTTTCTGA  800

seq1  ACAACATTTACAGGCAGTCTGTGACCTATTAGCTCAGCTTCTAGCTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTTACAGGCAGTCTGTGACCTATTAGCTCAGCTTCTAGCTATGT  850

seq1  ATATGGCATCAATATAAAAATAACCACAAGAAATTGAAAGTTGATGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCATCAATATAAAAATAACCACAAGAAATTGAAAGTTGATGAGTT  900

seq1  TTGTCGACAATGATGATGTCAACAAAATTAATGAAATTGACCTAGTTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGACAATGATGATGTCAACAAAATTAATGAAATTGACCTAGTTACC  950

seq1  CATCAGTCCAAAAATCAA-TTAAAGGGAAATAGTAAAAGAGTGCATGTTT  999
      |||||||||||||||||| |||| |||||||||| |||||||||||||||
seq2  CATCAGTCCAAAAATCAATTTAAGGGGAAATAGT-AAAGAGTGCATGTTT  999

seq1  ACAGGATGAAAAATAATAAAATTAAAAT-ATAGGATGTTATAGATAAATC  1048
      |||||||| |||||||| |||||||||| |||||||||||||||||||||
seq2  ACAGGATG-AAAATAAT-AAATTAAAATAATAGGATGTTATAGATAAATC  1047

seq1  ACATA-TTTCTTTCAC-TTAAAGAAGCCAAACACATATAAGTAACTCAA-  1095
      ||||| |||||||||| ||||||||||  ||||||||| |||||||||| 
seq2  ACATATTTTCTTTCACTTTAAAGAAGC--AACACATAT-AGTAACTCAAT  1094

seq1  TCTGTCTGGAGAGTAGCAGGAAA--AGAGTTTAAGGAGTTTAATAAATAA  1143
      ||||||| |||||||||  ||||  ||||||| |||| ||      ||| 
seq2  TCTGTCT-GAGAGTAGCCAGAAAAGAGAGTTTTAGGATTT-----CATAT  1138

seq1  ATAAGAATTCAGCTTTTAAAATATTTCCTACCT  1176
      |  || ||||||||||  |||||||||||||||
seq2  ACTAGGATTCAGCTTT--AAATATTTCCTACCT  1169


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