BAC Information

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BAC

Clone NameB6Ng01-298L03
Chromosome8 (Build37)
Map Location 105,221,649 - 105,354,870
singlet/doubletdoublet
Overlap geneCdh11
Upstream genenone
Downstream geneEG667618, LOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298L03.bB6Ng01-298L03.g
ACCGA093735GA093736
length1,1741,114
definitionB6Ng01-298L03.b B6Ng01-298L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,221,649 - 105,222,837)(105,353,742 - 105,354,870)
sequence
gaattcattaaattagaccttagaagatcataacattgtgtgtcaatgaa
tacatctgttactgtttgatgttcaccaaatatttttgtctaccttgtga
gaactactgcagaagcagacagagaacacattggaagcatgagcaagtga
ccattgtattgtacatagacgatgttagacatgagctggaagcatggatg
atgtttaatacctataagtcttgtgagagagcaatttttgttccttcctt
gactcagagcattaaaaaacttcctagttctccaacttctgacaccagat
aaaggggcataacctgaatttgaccccagtgacagaaataagcccacaca
catatgccaagtgttcattctctaaatccccagcaaaaacatccagagaa
aaatagctcttgatataacagaggtgatgcctatgcaaaggagaaaatta
atttcattctgatttcccctgatctgtgctgtatgtatcaaatcatgggc
ctctttgcaaaattaagggcattagttatcctcccattcagcttcagcgg
cattagacttgcatgcagacattcctagctaagatgacgaatatcaaatt
tttacaaaatcattcatcaagaggtgagacctaagcctgattagcgtttc
aataagaatgctgagactaaatagagactaagcagatgatcacagcagca
attaggcaccttccagacagccaagcttttttctcaaaccaattgagttt
aaggaaatggagatttttccccccttctctctttctcttcccccctgctg
tgcaatgaactgccttaaataactgatgaagtgacagcaagccccgttaa
aaggaacgtctgcccattaagtaaaggcttaattaagcggagcacaggct
aatcactcttccacctaataagcgatatgccctggttaagctcatcatgc
tttcgaggcgtggtccaagaggcctcggagacagctcagtaaacgacaaa
agtcacatacacagtgccagaacatctgccagtcacagggaatcagacta
tgacagcaaataaaagcatcaaatactagatggccctggttattctcctc
agtaatccagaaatgagctgatgctccttccattgaataaggtcattgaa
gtttagtggatgtgaaaattgttc

gaattctctgtttagctctgtaccccattttaattgggttattttgggta
cttgacttccttatatattttggttattagccatttgtcagatgtagggt
tagtgaagaccttttcccaatctattgaatactatttgacccttgatgct
atccttttgcttatagaagcttttcagtttcttgaggtcccatttattaa
ttattgaacttaaagtctgagttatcagtattttgttctggaatttctct
tctgtaccaatgagttcaaggctgttcccttttttctgtacttagattca
gtgtatctggttttatgttaaagtctttgatccatttggacttaaagttc
tgtgcagggtgatgaatatggctctatttgcattcttctacatgcagaca
tccagttagcatcatttgttgaagatgctttatttttttctattatatgg
ttttggctttatttgcttgctagtgtatttgagatatatcttcacaccac
actgggcattgtctttggctttatccagtgaggaactcacctgtttctca
agtcttcatctttcttgtcttattctgttatgcacattgttcattcaata
gcttcttcagacagagtacattacagtatattactactgtacattagata
gtctgttatatattttaaagatttatttaattttatgtgtatttgtcttg
tgcctgaatttatatctgtgtgtaggtataagatcccttggaactacaga
gccacagagagctgtaagaagctgtgtgtgtgctgggaatttaacctggt
cttctggaatagcaggcagtgttctcaacaactaagctgtttcatgttca
agtttgttgtattcttaacaaaacaaaacaaacaaaaaacaaacaaaaaa
caaaaagactcaaacctatagcagagagaaatagtggttttactcttaac
tgtgattttctgtatttctcattttccataatagacatatctacctttat
attgggaaataaactttgattttaaatgcaatgagttttggaagattaaa
tctggctgtcatagagagaaattgatgttgagattaattgagaatacgac
atcctgccattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105221649_105222837
seq2: B6Ng01-298L03.b_46_1219

seq1  GAATTCATTAAATTAGACCTTAGAAGATCATAACATTGTGTGTCAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAATTAGACCTTAGAAGATCATAACATTGTGTGTCAATGAA  50

seq1  TACATCTGTTACTGTTTGATGTTCACCAAATATTTTTGTCTACCTTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGTTACTGTTTGATGTTCACCAAATATTTTTGTCTACCTTGTGA  100

seq1  GAACTACTGCAGAAGCAGACAGAGAACACATTGGAAGCATGAGCAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTGCAGAAGCAGACAGAGAACACATTGGAAGCATGAGCAAGTGA  150

seq1  CCATTGTATTGTACATAGACGATGTTAGACATGAGCTGGAAGCATGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATTGTACATAGACGATGTTAGACATGAGCTGGAAGCATGGATG  200

seq1  ATGTTTAATACCTATAAGTCTTGTGAGAGAGCAATTTTTGTTCCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATACCTATAAGTCTTGTGAGAGAGCAATTTTTGTTCCTTCCTT  250

seq1  GACTCAGAGCATTAAAAAACTTCCTAGTTCTCCAACTTCTGACACCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGCATTAAAAAACTTCCTAGTTCTCCAACTTCTGACACCAGAT  300

seq1  AAAGGGGCATAACCTGAATTTGACCCCAGTGACAGAAATAAGCCCACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCATAACCTGAATTTGACCCCAGTGACAGAAATAAGCCCACACA  350

seq1  CATATGCCAAGTGTTCATTCTCTAAATCCCCAGCAAAAACATCCAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCAAGTGTTCATTCTCTAAATCCCCAGCAAAAACATCCAGAGAA  400

seq1  AAATAGCTCTTGATATAACAGAGGTGATGCCTATGCAAAGGAGAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTCTTGATATAACAGAGGTGATGCCTATGCAAAGGAGAAAATTA  450

seq1  ATTTCATTCTGATTTCCCCTGATCTGTGCTGTATGTATCAAATCATGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCTGATTTCCCCTGATCTGTGCTGTATGTATCAAATCATGGGC  500

seq1  CTCTTTGCAAAATTAAGGGCATTAGTTATCCTCCCATTCAGCTTCAGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCAAAATTAAGGGCATTAGTTATCCTCCCATTCAGCTTCAGCGG  550

seq1  CATTAGACTTGCATGCAGACATTCCTAGCTAAGATGACGAATATCAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACTTGCATGCAGACATTCCTAGCTAAGATGACGAATATCAAATT  600

seq1  TTTACAAAATCATTCATCAAGAGGTGAGACCTAAGCCTGATTAGCGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAATCATTCATCAAGAGGTGAGACCTAAGCCTGATTAGCGTTTC  650

seq1  AATAAGAATGCTGAGACTAAATAGAGACTAAGCAGATGATCACAGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATGCTGAGACTAAATAGAGACTAAGCAGATGATCACAGCAGCA  700

seq1  ATTAGGCACCTTCCAGACAGCCAAGCTTTTTTCTCAAACCAATTGAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCACCTTCCAGACAGCCAAGCTTTTTTCTCAAACCAATTGAGTTT  750

seq1  AAGGAAATGGAGATTTTTCCCCCCTTCTCTCTTTCTCTTCCCCCCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGGAGATTTTTCCCCCCTTCTCTCTTTCTCTTCCCCCCTGCTG  800

seq1  TGCAATGAACTGCCTTAAATAACTGATGAAGTGACAGCAAGCCCCGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAACTGCCTTAAATAACTGATGAAGTGACAGCAAGCCCCGTTAA  850

seq1  AAGGAACGTCTGCCCATTAAGT-AAGGCTTAATTAAGCGGAGCACAGGCT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGAACGTCTGCCCATTAAGTAAAGGCTTAATTAAGCGGAGCACAGGCT  900

seq1  AATCACTCTTCCACCTAATAAGCGATATGCCCTGGTTAAGCTCATCATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCTTCCACCTAATAAGCGATATGCCCTGGTTAAGCTCATCATGC  950

seq1  TTTCGAGGCGTGGTCCAAGAGGCCTCGGAAGACAGCTCAGTAAACGACAA  999
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCGAGGCGTGGTCCAAGAGGCCTCGG-AGACAGCTCAGTAAACGACAA  999

seq1  AAGTCACATACACAGTGCCAAGACATCTGCCAAGTCACAAGGGAATCAGA  1049
      ||||||||||||||||||||  ||||||||| |||||| |||||||||| 
seq2  AAGTCACATACACAGTGCCAGAACATCTGCC-AGTCAC-AGGGAATCAG-  1046

seq1  ACTATGAACAAGCAAATAAAAGCCATCAAATACTAAGATTGGGCCCCTGG  1099
      |||||||   |||||||||||| ||||||||||| ||||   | ||||||
seq2  ACTATGA--CAGCAAATAAAAG-CATCAAATACT-AGAT---GGCCCTGG  1089

seq1  TTATTCTCTCAAGGTTTATTCAGGAAAATGAAGCTGGATGCTCTCTTCTC  1149
      ||||||||   ||  | || |||  ||||| |||| ||||||| |||| |
seq2  TTATTCTCCTCAG--TAATCCAG--AAATG-AGCT-GATGCTC-CTTC-C  1131

seq1  CTTAGATAA-GTCATTTGAAGTTAA--TGATG-AAAAATTGTTC  1189
       ||  |||| |||| |||||||| |   ||||  ||||||||||
seq2  ATTGAATAAGGTCA-TTGAAGTTTAGTGGATGTGAAAATTGTTC  1174


seq1: chr8_105353742_105354870
seq2: B6Ng01-298L03.g_67_1180 (reverse)

seq1  GAAAATGCCA-GATGTTCGTATTTCTCATTTAATCTTCACATC-ATTTCT  48
      ||||||| || |||| ||||| |||||| |||||||  ||||| ||||||
seq2  GAAAATGGCAGGATG-TCGTA-TTCTCAATTAATCTCAACATCAATTTCT  48

seq1  CTCTATGACAGCCAGATTT-ATCTTCCAAAACTCATTTGCATTTTAAAAA  97
      ||||||||||||||||||| ||||||||||||||| ||||||||  ||||
seq2  CTCTATGACAGCCAGATTTAATCTTCCAAAACTCA-TTGCATTT--AAAA  95

seq1  TCAAAGTTTTATTTCCAATTATAAAGGTAAGATATGTCTATTATGGAAAA  147
      |||||| ||||||||| | ||||||||| |||||||||||||||||||||
seq2  TCAAAG-TTTATTTCCCAATATAAAGGT-AGATATGTCTATTATGGAAAA  143

seq1  TGAGAAATTACAGAAAAATCACAGTTAAGAGTAAAACCACTATTTCTCTC  197
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAGAAA-TACAG-AAAATCACAGTTAAGAGTAAAACCACTATTTCTCTC  191

seq1  TTGCTATAGGTTTGAGTTCTTTTTTGTTTTTTTGTTTTTGTTTTTTTGTT  247
       ||||||||||||||||   ||||||||||||  || || ||| ||||||
seq2  -TGCTATAGGTTTGAGT--CTTTTTGTTTTTTGTTTGTTTTTTGTTTGTT  238

seq1  TTGTTTTGTTTTTGTTTAAGAATACAACAAACTTGAACATG-AACAGCTT  296
      ||||||||       |||||||||||||||||||||||||| ||||||||
seq2  TTGTTTTG-------TTAAGAATACAACAAACTTGAACATGAAACAGCTT  281

seq1  AGTTGTTGAGAACACTGCCTGCTATTCCAGAAGACCAGGTTAAATTCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGAGAACACTGCCTGCTATTCCAGAAGACCAGGTTAAATTCCCA  331

seq1  GCACACACACAGCTTCTTACAGCTCTCTGTGGCTCTGTAGTTCCAAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACAGCTTCTTACAGCTCTCTGTGGCTCTGTAGTTCCAAGGGA  381

seq1  TCTTATACCTACACACAGATATAAATTCAGGCACAAGACAAATACACATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACCTACACACAGATATAAATTCAGGCACAAGACAAATACACATA  431

seq1  AAATTAAATAAATCTTTAAAATATATAACAGACTATCTAATGTACAGTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATAAATCTTTAAAATATATAACAGACTATCTAATGTACAGTAG  481

seq1  TAATATACTGTAATGTACTCTGTCTGAAGAAGCTATTGAATGAACAATGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTGTAATGTACTCTGTCTGAAGAAGCTATTGAATGAACAATGT  531

seq1  GCATAACAGAATAAGACAAGAAAGATGAAGACTTGAGAAACAGGTGAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACAGAATAAGACAAGAAAGATGAAGACTTGAGAAACAGGTGAGTT  581

seq1  CCTCACTGGATAAAGCCAAAGACAATGCCCAGTGTGGTGTGAAGATATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGGATAAAGCCAAAGACAATGCCCAGTGTGGTGTGAAGATATAT  631

seq1  CTCAAATACACTAGCAAGCAAATAAAGCCAAAACCATATAATAGAAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATACACTAGCAAGCAAATAAAGCCAAAACCATATAATAGAAAAAA  681

seq1  ATAAAGCATCTTCAACAAATGATGCTAACTGGATGTCTGCATGTAGAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCTTCAACAAATGATGCTAACTGGATGTCTGCATGTAGAAGA  731

seq1  ATGCAAATAGAGCCATATTCATCACCCTGCACAGAACTTTAAGTCCAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATAGAGCCATATTCATCACCCTGCACAGAACTTTAAGTCCAAAT  781

seq1  GGATCAAAGACTTTAACATAAAACCAGATACACTGAATCTAAGTACAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAGACTTTAACATAAAACCAGATACACTGAATCTAAGTACAGAA  831

seq1  AAAAGGGAACAGCCTTGAACTCATTGGTACAGAAGAGAAATTCCAGAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAACAGCCTTGAACTCATTGGTACAGAAGAGAAATTCCAGAACA  881

seq1  AAATACTGATAACTCAGACTTTAAGTTCAATAATTAATAAATGGGACCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGATAACTCAGACTTTAAGTTCAATAATTAATAAATGGGACCTC  931

seq1  AAGAAACTGAAAAGCTTCTATAAGCAAAAGGATAGCATCAAGGGTCAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGAAAAGCTTCTATAAGCAAAAGGATAGCATCAAGGGTCAAAT  981

seq1  AGTATTCAATAGATTGGGAAAAGGTCTTCACTAACCCTACATCTGACAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCAATAGATTGGGAAAAGGTCTTCACTAACCCTACATCTGACAAA  1031

seq1  TGGCTAATAACCAAAATATATAAGGAAGTCAAGTACCCAAAATAACCCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATAACCAAAATATATAAGGAAGTCAAGTACCCAAAATAACCCAA  1081

seq1  TTAAAATGGGGTACAGAGCTAAACAGAGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  TTAAAATGGGGTACAGAGCTAAACAGAGAATTC  1114


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