BAC Information

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BAC

Clone NameB6Ng01-303D24
Chromosome8 (Build37)
Map Location 39,238,674 - 39,239,827
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621149, Sgcz
Downstream geneTusc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303D24.bB6Ng01-303D24.g
ACCGA097097GA097098
length9431,162
definitionB6Ng01-303D24.b B6Ng01-303D24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaatggggttacttgattt
tctggagtccaccttcttgagttctttttatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
ttgtcttgttgacggtgtcttttgccttgcagaagctttccaattttaag
aggtcccatttgtcaattctcatcttacagcacaagccattgctgttcta
ttcaggaatttcccccctgtatccatatcttcgaggcttttccctacttt
ctcctctataagtttcagtgtctctggtttcatgtggttatttttttatt
tacatttcaaatgttatcccccatcctacttcccacccctcaaaaaaacc
tcccaatccaccccctccccctgtctccatgagggtataccccaccccac
ctactcctgccccaccaggctatcattccactcaaatggggttatcgagc
cttaactggacccatcaatggtaagggaagtccaattgatgcctgacaag
gccatcctctgctacatatgcagctggagccatgggtccctccatgagta
ttctttggttggtggtttaaccactgggaggtctggggtggtctggttgg
ttgatattgttgttcctctcacagtgttgcaaaccccttcagctccttca
gtccttcccccaacttctccatttgggttcccttgcttagtctgatattt
ggctgaaagcattcacatctgcatacataaggctctgacagagcctctca
ggagacatctacatcaaggttcctgtcagcaagcacttcccagcatcagc
aagtgtttgggtttggtgactgcacatgggatgaccccaaggtggggcag
tccctggacagccctttccctcagtctctgttccattccttat

gaattcagatgtccatacccatgtgcggtgatgcggagaacagaggataa
agccctgtgcattcccctatcagccttatgttattgacttgagacagggt
ctcactgaaagttacagttgggcaaacatggccagctaggagattttcca
agccctgaggatacattttcaaaggtgaatgaactgcacgcaatgttaag
tttccataattctgtgtaaacttcctgcttctgagttcccttcagatgaa
ctgaccttctgtagctagtgatttactccataacaggagtgctactgtaa
attatgaatactgtaaggtacaattttgtgctagagtccactgagcagaa
cagtaggtttgtgttcttatttcattgacattttaatttcaattataaag
aggcagagccgagaaggcagtgtctgtatgttaccctcctttctgttgtc
tcctaaatggcaacctctggaaagagtattctgttctgtagagttgggat
actcccaccaacccccaccacatgcagcgaggcaattatttgctccaggt
ctgtaccagttttatcactgaaagacatagacaaagctaagctgcctagt
cacataagtgtttacctccaagatcctgtttaagctttcataaggacaaa
gttgaagtagcccttgcctactattgctattcacagtttctaaaatgtag
gctaccttgactgcaagaaacaaacaaaattttgctgtgagtttcaaaga
caaacacagcaagttcagcttatttgtgcttgttgttaaatgtatctcag
tgcctagataacaaaaggccaaataatcatggccaaaagatgactgtaat
aattatctaagtttgctatcttcatgttatattcatatgtttataatatc
taaagcaatgtggctcagaaaacacctgaaaaagatcaccccctcataga
atcctagtctgaaaactcctactatgcctgatatatcttcattttgcttt
atttccccatacaggtaatacatactattcctactattctaaaagtaaaa
ttatattgtaatcccagtattttattggttggttatcatcggcatctatt
tcatctctcactcatcaggtgtaaatcctccatcagccaacatttttttt
tattcataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39238674_39239827
seq2: B6Ng01-303D24.g_67_1228

seq1  GAATTCAGATGTCCATACCCATGTGCGGTGATGCGGAGAACAGAGGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTCCATACCCATGTGCGGTGATGCGGAGAACAGAGGATAA  50

seq1  AGCCCTGTGCATTCCCCTATCAGCCTTATGTTATTGACTTGAGACAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGCATTCCCCTATCAGCCTTATGTTATTGACTTGAGACAGGGT  100

seq1  CTCACTGAAAGTTACAGTTGGGCAAACATGGCCAGCTAGGAGATTTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAAAGTTACAGTTGGGCAAACATGGCCAGCTAGGAGATTTTCCA  150

seq1  AGCCCTGAGGATACATTTTCAAAGGTGAATGAACTGCACGCAATGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGGATACATTTTCAAAGGTGAATGAACTGCACGCAATGTTAAG  200

seq1  TTTCCATAATTCTGTGTAAACTTCCTGCTTCTGAGTTCCCTTCAGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAATTCTGTGTAAACTTCCTGCTTCTGAGTTCCCTTCAGATGAA  250

seq1  CTGACCTTCTGTAGCTAGTGATTTACTCCATAACAGGAGTGCTACTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTTCTGTAGCTAGTGATTTACTCCATAACAGGAGTGCTACTGTAA  300

seq1  ATTATGAATACTGTAAGGTACAATTTTGTGCTAGAGTCCACTGAGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAATACTGTAAGGTACAATTTTGTGCTAGAGTCCACTGAGCAGAA  350

seq1  CAGTAGGTTTGTGTTCTTATTTCATTGACATTTTAATTTCAATTATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTTTGTGTTCTTATTTCATTGACATTTTAATTTCAATTATAAAG  400

seq1  AGGCAGAGCCGAGAAGGCAGTGTCTGTATGTTACCCTCCTTTCTGTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCCGAGAAGGCAGTGTCTGTATGTTACCCTCCTTTCTGTTGTC  450

seq1  TCCTAAATGGCAACCTCTGGAAAGAGTATTCTGTTCTGTAGAGTTGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATGGCAACCTCTGGAAAGAGTATTCTGTTCTGTAGAGTTGGGAT  500

seq1  ACTCCCACCAACCCCCACCACATGCAGCGAGGCAATTATTTGCTCCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACCAACCCCCACCACATGCAGCGAGGCAATTATTTGCTCCAGGT  550

seq1  CTGTACCAGTTTTATCACTGAAAGACATAGACAAAGCTAAGCTGCCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAGTTTTATCACTGAAAGACATAGACAAAGCTAAGCTGCCTAGT  600

seq1  CACATAAGTGTTTACCTCCAAGATCCTGTTTAAGCTTTCATAAGGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAGTGTTTACCTCCAAGATCCTGTTTAAGCTTTCATAAGGACAAA  650

seq1  GTTGAAGTAGCCCTTGCCTACTATTGCTATTCACAGTTTCTAAAATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGTAGCCCTTGCCTACTATTGCTATTCACAGTTTCTAAAATGTAG  700

seq1  GCTACCTTGACTGCAAGAAACAAACAAAATTTTGCTGTGAGTTTCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTGACTGCAAGAAACAAACAAAATTTTGCTGTGAGTTTCAAAGA  750

seq1  CAAACACAGCAAGTTCAGCTTATTTGTGCTTGTTGTTAAATGTATCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGCAAGTTCAGCTTATTTGTGCTTGTTGTTAAATGTATCTCAG  800

seq1  TGCCTAGATAACAAAAGGCCAAATAATCATGGCCAAAAGATGACTGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGATAACAAAAGGCCAAATAATCATGGCCAAAAGATGACTGTAAT  850

seq1  AATTATCTAAGTTTGCTATCTTCATGTTATATTCATATGTTTATAATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTAAGTTTGCTATCTTCATGTTATATTCATATGTTTATAATATC  900

seq1  TAAAGCAATGTGGCTCAG-AAACACCTG-AAAAGATCA-CCCCTCATAGA  947
      |||||||||||||||||| ||||||||| ||||||||| |||||||||||
seq2  TAAAGCAATGTGGCTCAGAAAACACCTGAAAAAGATCACCCCCTCATAGA  950

seq1  ATCCTAGTCTGAAAACTCCTACTATGCCTGATATATCTTCATTTTGCTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTCTGAAAACTCCTACTATGCCTGATATATCTTCATTTTGCTTT  1000

seq1  ATTTCCCCCATACAGGTAATACATACTA-TCCTACTA-TCTAAAAGTAAA  1045
      |||| ||||||||||||||||||||||| |||||||| ||||||||||||
seq2  ATTT-CCCCATACAGGTAATACATACTATTCCTACTATTCTAAAAGTAAA  1049

seq1  A-TATA-TGTAAT-CCAGTA-TTTATTGTTTGGTTATCCTTCGCATCTA-  1090
      | |||| |||||| |||||| ||||||| ||||||||| |  ||||||| 
seq2  ATTATATTGTAATCCCAGTATTTTATTGGTTGGTTATCATCGGCATCTAT  1099

seq1  TTCATCTCTTCACTCATCAGTTGTAA--TCTCCATCAGGCAAACATTTTT  1138
      |||||||| ||||||||||| |||||   |||||||| || |||| ||||
seq2  TTCATCTC-TCACTCATCAGGTGTAAATCCTCCATCA-GCCAACA-TTTT  1146

seq1  TTTTTATTTATAAATA  1154
      |||||||| |||||||
seq2  TTTTTATTCATAAATA  1162


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