BAC Information

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BAC

Clone NameB6Ng01-303K21
Chromosome8 (Build37)
Map Location 88,359,188 - 88,483,301
singlet/doubletdoublet
Overlap geneItfg1, Phkb
Upstream geneGadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, LOC100040798
Downstream geneLOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303K21.bB6Ng01-303K21.g
ACCGA097423GA097424
length1,0761,101
definitionB6Ng01-303K21.b B6Ng01-303K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,482,223 - 88,483,301)(88,359,188 - 88,360,292)
sequence
gaattcagaaaacagcatacatattatctttcttgatcactacaataaaa
ggcaatagctctgttgcataaaattcatttagggatacacatagcatagc
atcctcagtagattcagtaggataaaaactgacctgaactagtgaaagtc
agagtatttctaaagattcactttgctataaatctcatgtaaaaatacta
actccagttaactgcttataaaatatcattgtgaaggtatgaagctgagg
ttcctttaatgaataaatacaactttattagtaaatatggtatctagaat
cttatgaccatccatggacatttgatgggttataaagaattagggcaaca
gttaaataacccagcttgtaaattctcaccctgcgcacacattaggatga
tatggctaggccatcatggtggggtacaacacagctttttctcctcccag
aagaaaatctgcatatggcttcatgaaatgtgccccctgtgtgctctcta
acgtgtttcagaactttggtaggaagagagtcttcttttaaggtggttca
gagcatttcttgattgttttggccactaaatagaaatggaagcatgattt
ttacattcctgtgcacaagaaaatgctgcctatgttaacaacctgcacac
atccagcactttgatttggagtgagaattgtcatgatttttctgctgagg
gagagcattcttaacttcctcctctttaaagatcagttttacatgaccat
ggggaatgtagccaattctggttcctggtttatcagctttcgccagggca
tttttgaggggttaccagtctttccaaatgcaacaactccaacctcactt
ggtcacatggtacaggagacttggaaaacacatagaaaagaagagaactg
aaaagagcattggtttgagttgtttccctggtttttgtttgctcttgtgt
aacgtgtacaaaaacctcaaactgaactctgagaattgggctctgaaacc
ttcatccctcaaggatgatgaaaagtagccaaagatgatcctctttccag
cacaacacaccattaatataaatatt
gaattcactctatagggaagattcaattcatagtttcatttgaggttccc
ttataaatatcttttagctgaatatttttctgtacaaattggtaatcaac
aagattttagtgcagacaaataaaatatcatgtccatgatcatcccaact
ctgccttatccatgtttttttttttttttttaataagcagcacctgcaca
tagtattcttgtaaatatttaaaggacaagtgtatgtgctaagattgttt
gaatttacaaatgttgacagaaagcatactggcatttgctgtctatgtca
ggattatcatttgccttttcagataggacttcaaatccatgaatggattg
gtatagcagattgactcacaacttacactttttgtatttttctggaatgg
gaaaacttgaaagcaaaaaggagggattgccagttatcctggcatctgca
atgctaagctaactgtgaggctgtgatagccaggttgactggttttcaca
ggcatgtggggtgaggcaatgtctttacgtcttctgcatccatctttgtg
tttgcactctatatttggcagtattaagaggccaagtgcacatccatttt
gctgatgaggcttttagcagaactagcatcctatgcagcagctgctgtgc
atctggccaattctcatagctaaaggacagtgccttagggtcaccgagga
ctgttctacccaaagctctgaagtttgctctttttgttttatgagataaa
gtctcacatttaatcctggcagacatggaactcagagagatccacctgtc
tatctcccaagtgccctcatactagccttgaagttaatttttttagtcac
tccaacaaatctaaaagcttacaatatctcttttacaagtgatcaagaat
tggatttgttgtctgaaaaggactagtttattttgggaaaagaaaaatga
agtgtcaggaaatttttactagtattccaagaacagaacattttattgtt
tggagattatactatttacattttattaagaatatcagcataataagtaa
aactcactatgtttgaatttggtccaaagatacagcttctaggttcactg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88482223_88483301
seq2: B6Ng01-303K21.b_47_1122 (reverse)

seq1  AATATTTATATTTAAATGTGTGTTTGTGCTGGAAGAGGGATCATCTTTGG  50
      |||||||||| ||||  ||||| |||||||||||   |||||||||||||
seq2  AATATTTATA-TTAATGGTGTG-TTGTGCTGGAAAGAGGATCATCTTTGG  48

seq1  CTACTTTTCATCATCCTTGAGGGATGAAGGTTTCAGAGGCCAAATTCTCA  100
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  CTACTTTTCATCATCCTTGAGGGATGAAGGTTTCAGA-GCCCAATTCTCA  97

seq1  GAGTTCAGTTTGAGGTTTTTGTACACGTTACACAAGAGCAAACAAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGTTTGAGGTTTTTGTACACGTTACACAAGAGCAAACAAAAACC  147

seq1  AGGGAAACAACTCAAACCAATGCTCTTTTCAGTTCTCTTCTTTTCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAACTCAAACCAATGCTCTTTTCAGTTCTCTTCTTTTCTATGT  197

seq1  GTTTTCCAAGTCTCCTGTACCATGTGACCAAGTGAGGTTGGAGTTGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCAAGTCTCCTGTACCATGTGACCAAGTGAGGTTGGAGTTGTTGC  247

seq1  ATTTGGAAAGACTGGTAACCCCTCAAAAATGCCCTGGCGAAAGCTGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAGACTGGTAACCCCTCAAAAATGCCCTGGCGAAAGCTGATAA  297

seq1  ACCAGGAACCAGAATTGGCTACATTCCCCATGGTCATGTAAAACTGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAACCAGAATTGGCTACATTCCCCATGGTCATGTAAAACTGATCT  347

seq1  TTAAAGAGGAGGAAGTTAAGAATGCTCTCCCTCAGCAGAAAAATCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGGAGGAAGTTAAGAATGCTCTCCCTCAGCAGAAAAATCATGAC  397

seq1  AATTCTCACTCCAAATCAAAGTGCTGGATGTGTGCAGGTTGTTAACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCACTCCAAATCAAAGTGCTGGATGTGTGCAGGTTGTTAACATAG  447

seq1  GCAGCATTTTCTTGTGCACAGGAATGTAAAAATCATGCTTCCATTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTTCTTGTGCACAGGAATGTAAAAATCATGCTTCCATTTCTAT  497

seq1  TTAGTGGCCAAAACAATCAAGAAATGCTCTGAACCACCTTAAAAGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCCAAAACAATCAAGAAATGCTCTGAACCACCTTAAAAGAAGAC  547

seq1  TCTCTTCCTACCAAAGTTCTGAAACACGTTAGAGAGCACACAGGGGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTACCAAAGTTCTGAAACACGTTAGAGAGCACACAGGGGGCAC  597

seq1  ATTTCATGAAGCCATATGCAGATTTTCTTCTGGGAGGAGAAAAAGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGAAGCCATATGCAGATTTTCTTCTGGGAGGAGAAAAAGCTGTG  647

seq1  TTGTACCCCACCATGATGGCCTAGCCATATCATCCTAATGTGTGCGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCCCACCATGATGGCCTAGCCATATCATCCTAATGTGTGCGCAGG  697

seq1  GTGAGAATTTACAAGCTGGGTTATTTAACTGTTGCCCTAATTCTTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTTACAAGCTGGGTTATTTAACTGTTGCCCTAATTCTTTATAA  747

seq1  CCCATCAAATGTCCATGGATGGTCATAAGATTCTAGATACCATATTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAAATGTCCATGGATGGTCATAAGATTCTAGATACCATATTTACT  797

seq1  AATAAAGTTGTATTTATTCATTAAAGGAACCTCAGCTTCATACCTTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTTGTATTTATTCATTAAAGGAACCTCAGCTTCATACCTTCACA  847

seq1  ATGATATTTTATAAGCAGTTAACTGGAGTTAGTATTTTTACATGAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTATAAGCAGTTAACTGGAGTTAGTATTTTTACATGAGATTT  897

seq1  ATAGCAAAGTGAATCTTTAGAAATACTCTGACTTTCACTAGTTCAGGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGTGAATCTTTAGAAATACTCTGACTTTCACTAGTTCAGGTCA  947

seq1  GTTTTTATCCTACTGAATCTACTGAGGATGCTATGCTATGTGTATCCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATCCTACTGAATCTACTGAGGATGCTATGCTATGTGTATCCCTA  997

seq1  AATGAATTTTATGCAACAGAGCTATTGCCTTTTATTGTAGTGATCAAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTTATGCAACAGAGCTATTGCCTTTTATTGTAGTGATCAAGAA  1047

seq1  AGATAATATGTATGCTGTTTTCTGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  AGATAATATGTATGCTGTTTTCTGAATTC  1076

seq1: chr8_88359188_88360292
seq2: B6Ng01-303K21.g_65_1165

seq1  GAATTCACTCTATAGGGAAGATTCAATTCATAGTTTCATTTGAGGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGGGAAGATTCAATTCATAGTTTCATTTGAGGTTCCC  50

seq1  TTATAAATATCTTTTAGCTGAATATTTTTCTGTACAAATTGGTAATCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATATCTTTTAGCTGAATATTTTTCTGTACAAATTGGTAATCAAC  100

seq1  AAGATTTTAGTGCAGACAAATAAAATATCATGTCCATGATCATCCCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTAGTGCAGACAAATAAAATATCATGTCCATGATCATCCCAACT  150

seq1  CTGCCTTATCCATGTTTTTTTTTTTTTTTTTAATAAGCAGCACCTGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTATCCATGTTTTTTTTTTTTTTTTTAATAAGCAGCACCTGCACA  200

seq1  TAGTATTCTTGTAAATATTTAAAGGACAAGTGTATGTGCTAAGATTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTCTTGTAAATATTTAAAGGACAAGTGTATGTGCTAAGATTGTTT  250

seq1  GAATTTACAAATGTTGACAGAAAGCATACTGGCATTTGCTGTCTATGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACAAATGTTGACAGAAAGCATACTGGCATTTGCTGTCTATGTCA  300

seq1  GGATTATCATTTGCCTTTTCAGATAGGACTTCAAATCCATGAATGGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATCATTTGCCTTTTCAGATAGGACTTCAAATCCATGAATGGATTG  350

seq1  GTATAGCAGATTGACTCACAACTTACACTTTTTGTATTTTTCTGGAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCAGATTGACTCACAACTTACACTTTTTGTATTTTTCTGGAATGG  400

seq1  GAAAACTTGAAAGCAAAAAGGAGGGATTGCCAGTTATCCTGGCATCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTGAAAGCAAAAAGGAGGGATTGCCAGTTATCCTGGCATCTGCA  450

seq1  ATGCTAAGCTAACTGTGAGGCTGTGATAGCCAGGTTGACTGGTTTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGCTAACTGTGAGGCTGTGATAGCCAGGTTGACTGGTTTTCACA  500

seq1  GGCATGTGGGGTGAGGCAATGTCTTTACGTCTTCTGCATCCATCTTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGGGGTGAGGCAATGTCTTTACGTCTTCTGCATCCATCTTTGTG  550

seq1  TTTGCACTCTATATTTGGCAGTATTAAGAGGCCAAGTGCACATCCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTCTATATTTGGCAGTATTAAGAGGCCAAGTGCACATCCATTTT  600

seq1  GCTGATGAGGCTTTTAGCAGAACTAGCATCCTATGCAGCAGCTGCTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAGGCTTTTAGCAGAACTAGCATCCTATGCAGCAGCTGCTGTGC  650

seq1  ATCTGGCCAATTCTCATAGCTAAAGGACAGTGCCTTAGGGTCACCGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCAATTCTCATAGCTAAAGGACAGTGCCTTAGGGTCACCGAGGA  700

seq1  CTGTTCTACCCAAAGCTCTGAAGTTTGCTCTTTTTGTTTTATGAGATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTACCCAAAGCTCTGAAGTTTGCTCTTTTTGTTTTATGAGATAAA  750

seq1  GTCTCACATTTAATCCTGGCAGACATGGAACTCAGAGAGATCCACCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACATTTAATCCTGGCAGACATGGAACTCAGAGAGATCCACCTGTC  800

seq1  TATCTCCCAAGTGCCCTCATACTAGCCTTGAAGTTAA-TTTTTTAGTCAC  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATCTCCCAAGTGCCCTCATACTAGCCTTGAAGTTAATTTTTTTAGTCAC  850

seq1  TCCAACAAATCTAAAAGCTTACAATATCTCTTTTACAAGTGATCAAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAATCTAAAAGCTTACAATATCTCTTTTACAAGTGATCAAGAAT  900

seq1  GGAATTTGTTGTCTGAAAAGGACTAGTTTATTTT-GGAAAAG-AAAATGA  947
       | ||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGGATTTGTTGTCTGAAAAGGACTAGTTTATTTTGGGAAAAGAAAAATGA  950

seq1  AGTGTCAAGAAATTTTTACTAGTA-TCCAAGAACAGAACATTTAATTGTT  996
      ||||||| |||||||||||||||| |||||||||||||||||| ||||||
seq2  AGTGTCAGGAAATTTTTACTAGTATTCCAAGAACAGAACATTTTATTGTT  1000

seq1  TTGAGAATATAACTA-TTACATTTTTATTAAGAATATCAGCCAATAATAA  1045
      | |||| ||| |||| ||||| |||||||||||||||||||  ||||| |
seq2  TGGAGATTAT-ACTATTTACA-TTTTATTAAGAATATCAGC--ATAAT-A  1045

seq1  ATTAAAACTCACCTAATGTTTGATTTTGTCCCCAAAAGATAACAGCTCCT  1095
      | ||||||||||   |||||||| ||||  ||  |||||| |||||| ||
seq2  AGTAAAACTCAC--TATGTTTGAATTTGGTCC--AAAGAT-ACAGCTTCT  1090

seq1  A-GTTCACTGT  1105
      | |||||||||
seq2  AGGTTCACTGT  1101